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{{Known_motif
{{Known_motif
|entrez_gene_id=
|PWM=PO;A;C;G;T!1;235.847782;71.173251;26.046643;132.90618!2;142.284081;108.258384;97.81561;117.615781!3;53.792235;10.29034;72.089642;329.801639!4;24.973972;7.917489;246.146631;186.935764!5;58.205123;184.451872;144.137375;79.1794859999999!6;374.096017;35.382561;15.635845;40.859433!7;271.248331;0.905912;39.036638;154.782975!8;71.053665;4.338248;8.722454;381.859489!9;0;16.488609;0;449.485247!10;26.340859;2.425357;4.649761;432.557879!11;36.747302;176.065303;29.468136;223.693115!12;26.732693;195.16723;0.938174;243.135759!13;30.274585;97.0904880000001;0.338008;338.270775!14;106.640964;71.919639;118.468048;168.945205!15;181.560828;19.573;67.598113;197.241915
|entrez_gene_id=HMGA1,2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HMGA1,2.p2 /UNIPROBE:Mafk_secondary;SCI09
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HMGA1,2.p2 /UNIPROBE:Mafk_secondary;SCI09
|name=known93
|name=non-redundant93
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=HMGA1,2.p2
|representative_motif_id=HMGA1,2.p2
|representative_motif_name=  
|representative_motif_name=HMGA1,2
|score=0.21790111807962842
|score=0.21790111807962842
|uniprot_entry_name=
|uniprot_entry_name=HMGA1,2
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant93
  • db :SWISSREGULON
  • Id :HMGA1,2.p2
  • name :HMGA1,2
  • score :0.21790111807962842
  • External refs:
EntrezGene:HMGA1
UniProt:HMGA1

EntrezGene:2
UniProt:2

  • Internal refs:
EntrezGene:HMGA1

EntrezGene:2


Motif matrix
POACGT
1235.84778271.17325126.046643132.90618
2142.284081108.25838497.81561117.615781
353.79223510.2903472.089642329.801639
424.9739727.917489246.146631186.935764
558.205123184.451872144.13737579.1794859999999
6374.09601735.38256115.63584540.859433
7271.2483310.90591239.036638154.782975
871.0536654.3382488.722454381.859489
9016.4886090449.485247
1026.3408592.4253574.649761432.557879
1136.747302176.06530329.468136223.693115
1226.732693195.167230.938174243.135759
1330.27458597.09048800000010.338008338.270775
14106.64096471.919639118.468048168.945205
15181.56082819.57367.598113197.241915

Sub Motif Members