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NonredundantMotifs:97: Difference between revisions

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|PWM=P0;A;C;G;T!1;13.746859666221109;2.762561335115522;16.71859666221121;8.77198233645216!2;14.02198233645216;16.025122670231053;5.943473991980154;6.0094210013366345!3;1.9371933244223867;17.05966634179874;20.03140333778879;2.971736995990073!4;8.012561335115526;15.056526008019844;6.97801766354784;11.952894993316788!5;10.015701668894417;10.015701668894417;2.971736995990073;18.99685966622111!6;19.899509319075836;13.053385674240953;7.04396467290432;2.0031403337788793!7;6.97801766354784;4.974877329768948;24.10363101470306;5.943473991980154!8;2.971736995990073;39.02826300400994;0.0;0.0!9;0.0;0.0;42.0;0.0!10;2.0031403337788793;0.9685966622111933;39.02826300400994;0.0!11;40.96545632843232;1.034543671567686;0.0;0.0!12;0.0;39.996859666221106;2.0031403337788793;0.0!13;0.0;2.971736995990073;35.990578998663366;3.0376840053465695!14;0.9685966622111933;0.0;0.0;41.031403337788795!15;8.078508344472006;0.9685966622111933;4.908930320412468;28.04396467290432!16;16.21781157876646;11.308881258354036;11.242934248997514;3.2303729138819963
|PWM=P0;A;C;G;T!1;13.746859666221109;2.762561335115522;16.71859666221121;8.77198233645216!2;14.02198233645216;16.025122670231053;5.943473991980154;6.0094210013366345!3;1.9371933244223867;17.05966634179874;20.03140333778879;2.971736995990073!4;8.012561335115526;15.056526008019844;6.97801766354784;11.952894993316788!5;10.015701668894417;10.015701668894417;2.971736995990073;18.99685966622111!6;19.899509319075836;13.053385674240953;7.04396467290432;2.0031403337788793!7;6.97801766354784;4.974877329768948;24.10363101470306;5.943473991980154!8;2.971736995990073;39.02826300400994;0.0;0.0!9;0.0;0.0;42.0;0.0!10;2.0031403337788793;0.9685966622111933;39.02826300400994;0.0!11;40.96545632843232;1.034543671567686;0.0;0.0!12;0.0;39.996859666221106;2.0031403337788793;0.0!13;0.0;2.971736995990073;35.990578998663366;3.0376840053465695!14;0.9685966622111933;0.0;0.0;41.031403337788795!15;8.078508344472006;0.9685966622111933;4.908930320412468;28.04396467290432!16;16.21781157876646;11.308881258354036;11.242934248997514;3.2303729138819963
|entrez_gene_id=25988
|entrez_gene_id=25988
|motif_cluster_2013_march_motif_members= /JASPAR:MA0131.1;MIZF /HOCOMOCO:HINFP_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:HINFP_f1 /JASPAR:MA0131.1;MIZF
|name=known97
|name=non-redundant97
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=HINFP_f1
|representative_motif_id=HINFP_f1
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant97
  • db :HOCOMOCO
  • Id :HINFP_f1
  • name  :
  • score :0.25539944665495656
  • External refs:
EntrezGene:25988
UniProt:25988

  • Internal refs:
EntrezGene:25988


Motif matrix
P0ACGT
113.7468596662211092.76256133511552216.718596662211218.77198233645216
214.0219823364521616.0251226702310535.9434739919801546.0094210013366345
31.937193324422386717.0596663417987420.031403337788792.971736995990073
48.01256133511552615.0565260080198446.9780176635478411.952894993316788
510.01570166889441710.0157016688944172.97173699599007318.99685966622111
619.89950931907583613.0533856742409537.043964672904322.0031403337788793
76.978017663547844.97487732976894824.103631014703065.943473991980154
82.97173699599007339.028263004009940.00.0
90.00.042.00.0
102.00314033377887930.968596662211193339.028263004009940.0
1140.965456328432321.0345436715676860.00.0
120.039.9968596662211062.00314033377887930.0
130.02.97173699599007335.9905789986633663.0376840053465695
140.96859666221119330.00.041.031403337788795
158.0785083444720060.96859666221119334.90893032041246828.04396467290432
1616.2178115787664611.30888125835403611.2429342489975143.2303729138819963

Sub Motif Members

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