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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.6764705882352936;1.852941176470594;0.6764705882352936;10.794117647058815!2;2.117647058823534;0.0;10.705882352941174;1.1764705882352948!3;3.176470588235294;1.0588235294117643;2.9411764705882297;6.823529411764702!4;0.0;0.0;0.0;14.0!5;3.176470588235294;0.0;3.4117647058823577;7.411764705882348!6;13.17647058823529;0.0;0.8235294117647057;0.0!7;1.0588235294117643;3.8823529411764723;0.0;9.058823529411768!8;4.352941176470586;0.0;8.823529411764705;0.8235294117647057!9;0.0;0.5882352941176474;2.117647058823534;11.29411764705882!10;8.705882352941172;3.4117647058823577;1.0588235294117643;0.8235294117647057!11;9.764705882352946;0.0;2.117647058823534;2.117647058823534!12;5.999999999999992;4.352941176470586;2.588235294117648;1.0588235294117643!13;0.5882352941176474;2.8235294117647123;2.117647058823534;8.470588235294121!14;2.529411764705882;0.4117647058823522;5.94117647058824;5.11764705882353
|entrez_gene_id=7008
|entrez_gene_id=7008
|motif_cluster_2013_march_motif_members= /HOCOMOCO:TEF_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:TEF_f1
|name=known160
|name=non-redundant160
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=TEF_f1
|representative_motif_id=TEF_f1
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant160
  • db :HOCOMOCO
  • Id :TEF_f1
  • name  :
  • score :0.06128254407081912
  • External refs:
EntrezGene:7008
UniProt:7008

  • Internal refs:
EntrezGene:7008


Motif matrix
P0ACGT
10.67647058823529361.8529411764705940.676470588235293610.794117647058815
22.1176470588235340.010.7058823529411741.1764705882352948
33.1764705882352941.05882352941176432.94117647058822976.823529411764702
40.00.00.014.0
53.1764705882352940.03.41176470588235777.411764705882348
613.176470588235290.00.82352941176470570.0
71.05882352941176433.88235294117647230.09.058823529411768
84.3529411764705860.08.8235294117647050.8235294117647057
90.00.58823529411764742.11764705882353411.29411764705882
108.7058823529411723.41176470588235771.05882352941176430.8235294117647057
119.7647058823529460.02.1176470588235342.117647058823534
125.9999999999999924.3529411764705862.5882352941176481.0588235294117643
130.58823529411764742.82352941176471232.1176470588235348.470588235294121
142.5294117647058820.41176470588235225.941176470588245.11764705882353

Sub Motif Members