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Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant202
  • db :UNIPROBE
  • Id :Sp100_secondary
  • name :SCI09
  • score :0.18425104890212407
  • External refs:
EntrezGene:6672
UniProt:6672

  • Internal refs:
EntrezGene:6672


Motif matrix
P0ACGT
10.1215268688347040.3013065958030460.1801547455141290.397011789848121
20.139498040729870.3627125857986480.3122523870628240.185536986408657
30.1175826406794790.6814484568835690.06695377096733370.134015131469618
40.04766875646637440.03008571330204820.9032311011228840.0190144291086931
50.1702264656420550.1021959840866720.07275636731527280.654821182956
60.02869778744787340.9405933136681150.01767544745535540.0130334514286561
70.02964331473056870.03031536001567430.9112770785130770.0287642467406804
80.2170318865479080.3605725745106610.2018833203473180.220512218594114
90.1222906211380440.2162461034714310.2741587102118320.387304565178694
100.1634801746121150.1209960061604440.1857012470739940.529822572153446
110.6623189008556540.06411277281850810.03851120699810630.235057119327732
120.6081970753358390.1082274373368730.1065160313667720.177059455960516
130.4206389905600450.1445774598492670.08547758329800620.349305966292682
140.332025904062680.2065522321630120.2177113232741910.243710540500117
150.1558574213694030.2649457810298850.3179599551459650.261236842454747

Sub Motif Members