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NonredundantMotifs:142: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;33.046269;13.763313;71.531797;25.665831!2;59.081902;8.546048;59.876456;16.502804!3;3.798159;12.122525;71.1798040000001;56.906722!4;30.897754;12.652596;99.073151;1.383709!5;134.576526;1.336692;2.895185;5.198807!6;101.527105;1.088274;4.580056;36.811775!7;0.363531;1.467583;1.108087;141.068009!8;31.891998;2.391915;6.552784;103.170513!9;108.197849;15.000047;2.31903;18.490284!10;77.615726;30.604111;34.974266;0.813107!11;117.002649;5.821984;18.607765;2.574812!12;68.741944;25.575918;47.073832;2.615516!13;2.389918;27.642695;10.334816;103.639781!14;40.534458;1.85232;53.107732;48.5127!15;26.757537;37.397105;54.813895;25.038673
|PWM=PO;A;C;G;T!1;33.046269;13.763313;71.531797;25.665831!2;59.081902;8.546048;59.876456;16.502804!3;3.798159;12.122525;71.1798040000001;56.906722!4;30.897754;12.652596;99.073151;1.383709!5;134.576526;1.336692;2.895185;5.198807!6;101.527105;1.088274;4.580056;36.811775!7;0.363531;1.467583;1.108087;141.068009!8;31.891998;2.391915;6.552784;103.170513!9;108.197849;15.000047;2.31903;18.490284!10;77.615726;30.604111;34.974266;0.813107!11;117.002649;5.821984;18.607765;2.574812!12;68.741944;25.575918;47.073832;2.615516!13;2.389918;27.642695;10.334816;103.639781!14;40.534458;1.85232;53.107732;48.5127!15;26.757537;37.397105;54.813895;25.038673
|entrez_gene_id=
|entrez_gene_id=5453
|motif_cluster_2013_march_motif_members= /SWISSREGULON:POU3F1..4.p2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:POU3F1..4.p2
|name=known142
|name=non-redundant142
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=POU3F1..4.p2
|representative_motif_id=POU3F1..4.p2
|representative_motif_name=  
|representative_motif_name=POU3F1
|score=0.0499083096501652
|score=0.0499083096501652
|uniprot_entry_name=
|uniprot_entry_name=POU3F1
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 15:52, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant142
  • db :SWISSREGULON
  • Id :POU3F1..4.p2
  • name :POU3F1
  • score :0.0499083096501652
  • External refs:
EntrezGene:5453
UniProt:5453

  • Internal refs:
EntrezGene:5453


Motif matrix
POACGT
133.04626913.76331371.53179725.665831
259.0819028.54604859.87645616.502804
33.79815912.12252571.179804000000156.906722
430.89775412.65259699.0731511.383709
5134.5765261.3366922.8951855.198807
6101.5271051.0882744.58005636.811775
70.3635311.4675831.108087141.068009
831.8919982.3919156.552784103.170513
9108.19784915.0000472.3190318.490284
1077.61572630.60411134.9742660.813107
11117.0026495.82198418.6077652.574812
1268.74194425.57591847.0738322.615516
132.38991827.64269510.334816103.639781
1440.5344581.8523253.10773248.5127
1526.75753737.39710554.81389525.038673

Sub Motif Members