FFCP PHASE1:Hg19::chr11:107879993..107880004,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=S|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:107879993..107880004,-|id=chr11:107879993..107880004,-|ontology_enrichment_celltype=CL:0002057!6.64e-13!42;CL:0000860!1.39e-11!45;CL:0002194!1.78e-09!63;CL:0000576!1.78e-09!63;CL:0000040!1.78e-09!63;CL:0000559!1.78e-09!63;CL:0002009!1.41e-08!65;CL:0000115!1.61e-08!35;CL:0000213!7.72e-08!57;CL:0000215!7.72e-08!57;CL:0000766!8.20e-08!76;CL:0000839!1.36e-07!70;CL:0000557!3.18e-07!71;CL:0000222!6.52e-07!119;CL:0002078!9.76e-07!44|ontology_enrichment_celltype_v019=CL:0000860;4.00e-20;33!CL:0002057;4.00e-20;33!CL:0000473;2.03e-17;39!CL:0000234;2.03e-17;39!CL:0000576;5.64e-15;48!CL:0002188;3.43e-10;5!CL:0002262;2.36e-07;2!CL:1000398;2.36e-07;2!CL:1000746;2.81e-07;7!CL:1000612;2.81e-07;7!CL:1000449;9.10e-07;15!CL:0000766;9.98e-07;69|ontology_enrichment_celltype_v019_2=CL:0000860,6.82e-22,42;CL:0002057,6.82e-22,42;CL:0000473,6.44e-21,48;CL:0000234,6.44e-21,48;CL:0002194,2.05e-17,59;CL:0000576,2.05e-17,59;CL:0000040,2.05e-17,59;CL:0000559,2.05e-17,59;CL:0002009,1.12e-16,61;CL:0000839,5.02e-15,66;CL:0000766,7.30e-15,72;CL:0000557,1.00e-14,67;CL:0002188,3.02e-10,5;CL:0002087,3.53e-09,115;CL:0002031,1.45e-08,120;CL:0000763,3.55e-08,108;CL:0000049,3.55e-08,108;CL:0000738,1.03e-07,136;CL:0002262,1.66e-07,2;CL:1000398,1.66e-07,2;CL:1000746,2.57e-07,7;CL:1000612,2.57e-07,7;CL:1000449,6.17e-07,15|ontology_enrichment_development_v019=CL:0002057;2.49e-19;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003081!2.02e-09!216;UBERON:0002371!8.22e-07!80|ontology_enrichment_uberon_v019=UBERON:0001281;2.36e-07;2!UBERON:0003497;2.36e-07;2!UBERON:0003909;2.36e-07;2!UBERON:0003835;2.36e-07;2!UBERON:0000074;2.81e-07;7!UBERON:0001229;2.81e-07;7!UBERON:0000353;6.42e-07;15!UBERON:0006555;9.10e-07;15!UBERON:0004819;9.10e-07;15!UBERON:0001285;9.10e-07;15!UBERON:0007684;9.10e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.21e-12,76;UBERON:0001474,4.13e-11,82;UBERON:0004765,7.08e-11,90;UBERON:0002405,2.23e-10,93;UBERON:0001434,2.85e-09,100;UBERON:0003081,5.58e-09,203;UBERON:0002390,1.68e-08,98;UBERON:0003061,1.68e-08,98;UBERON:0002193,3.15e-08,108;UBERON:0001281,1.66e-07,2;UBERON:0003497,1.66e-07,2;UBERON:0003909,1.66e-07,2;UBERON:0003835,1.66e-07,2;UBERON:0010532,2.57e-07,7;UBERON:0000074,2.57e-07,7;UBERON:0001229,2.57e-07,7;UBERON:0001230,2.57e-07,7;UBERON:0003220,2.57e-07,7;UBERON:0005749,2.57e-07,7;UBERON:0004199,2.57e-07,7;UBERON:0004209,2.57e-07,7;UBERON:0004198,2.57e-07,7;UBERON:0000058,4.83e-07,19;UBERON:0000353,5.33e-07,15;UBERON:0004211,6.17e-07,15;UBERON:0009773,6.17e-07,15;UBERON:0001231,6.17e-07,15;UBERON:0001285,6.17e-07,15;UBERON:0007684,6.17e-07,15;UBERON:0004208,6.17e-07,15|phase1_expression=0.181678379270557,0.214100523890983,0,1.0007329835313,0.893922188854576,0,0,0,1.56711376919903,0.245733936501509,1.39560233594486,0.218441372130172,0.263766978228454,0.37129905888014,0,0.672325146451775,0.602694528023977,0,0.975865597581014,0.61560529038394,0.612002073732759,0.940364164434263,0.572471974262113,0.273748850145768,0.502170558379211,0.0764134057479513,0.0821005894499457,0,0.786728553697808,0,0.309632246632152,0.919421224478927,0,0.369754010166788,0.387336002901508,0,0.880801318004542,0,0.601633342410425,0.217010870715852,1.11957737119962,0,0.77272670290256,1.16318591023652,0.377875943688809,1.21292030593908,1.62700325833979,0.411167888021826,0.309706370895104,2.01384674625505,1.2808035326455,1.18241114944293,0.344745680736619,1.93645405075148,2.70852973188684,1.69418105588344,0.272906150057846,0.674170453335254,0,0.962787081228281,0.639337125799041,1.31940520074686,1.59570926097305,0.852449501065388,2.03146467040009,0.56738522469114,0,2.00998932205395,2.08593167368081,0.434377689410233,1.21079900526674,0,1.26584954976354,0.633765858935825,1.70083439972035,1.04829322754188,1.12328631146495,0.600707571366025,0.16072558669708,0.285012743741249,0.99458338599545,0.365328307529268,0,0.546138611262131,0.889509253863555,0.426730222566507,0.400395987036012,0.574752439954483,0,0,0.569212969109448,1.17447437874188,0,0,0,0.526768169550154,0,0,0.411202997999018,0,0,0,0,0,0.589211814949674,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255973222308837,2.49861453104692,0,0,0.201606743224732,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,0,1.15877215168659,0,0,0.661743720148475,0.221729397462564,0.527008714158756,0.327447688744282,0,0,0,0,0.26591592103773,0.476981248610684,0.571994910780128,0,0.39752481473341,0.860234595106124,0.694281003215189,0.56530794192401,0.838998872419812,0.275118041940067,0.208994966536811,0.775250277507987,0,0.33472061276467,0.805658634218294,0.760272105718513,1.46437234528902,0,0.81014194788176,0.446498641420399,0.44905874525234,0.337834441449967,0,0.949265659568129,0.916008719652036,1.31780417436063,0,0.4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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=S | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:107879993..107880004,- | |||
|id=chr11:107879993..107880004,- | |||
|ontology_enrichment_celltype=CL:0002057!6.64e-13!42;CL:0000860!1.39e-11!45;CL:0002194!1.78e-09!63;CL:0000576!1.78e-09!63;CL:0000040!1.78e-09!63;CL:0000559!1.78e-09!63;CL:0002009!1.41e-08!65;CL:0000115!1.61e-08!35;CL:0000213!7.72e-08!57;CL:0000215!7.72e-08!57;CL:0000766!8.20e-08!76;CL:0000839!1.36e-07!70;CL:0000557!3.18e-07!71;CL:0000222!6.52e-07!119;CL:0002078!9.76e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.00e-20;33!CL:0002057;4.00e-20;33!CL:0000473;2.03e-17;39!CL:0000234;2.03e-17;39!CL:0000576;5.64e-15;48!CL:0002188;3.43e-10;5!CL:0002262;2.36e-07;2!CL:1000398;2.36e-07;2!CL:1000746;2.81e-07;7!CL:1000612;2.81e-07;7!CL:1000449;9.10e-07;15!CL:0000766;9.98e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.82e-22,42;CL:0002057,6.82e-22,42;CL:0000473,6.44e-21,48;CL:0000234,6.44e-21,48;CL:0002194,2.05e-17,59;CL:0000576,2.05e-17,59;CL:0000040,2.05e-17,59;CL:0000559,2.05e-17,59;CL:0002009,1.12e-16,61;CL:0000839,5.02e-15,66;CL:0000766,7.30e-15,72;CL:0000557,1.00e-14,67;CL:0002188,3.02e-10,5;CL:0002087,3.53e-09,115;CL:0002031,1.45e-08,120;CL:0000763,3.55e-08,108;CL:0000049,3.55e-08,108;CL:0000738,1.03e-07,136;CL:0002262,1.66e-07,2;CL:1000398,1.66e-07,2;CL:1000746,2.57e-07,7;CL:1000612,2.57e-07,7;CL:1000449,6.17e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002057;2.49e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!2.02e-09!216;UBERON:0002371!8.22e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0001281;2.36e-07;2!UBERON:0003497;2.36e-07;2!UBERON:0003909;2.36e-07;2!UBERON:0003835;2.36e-07;2!UBERON:0000074;2.81e-07;7!UBERON:0001229;2.81e-07;7!UBERON:0000353;6.42e-07;15!UBERON:0006555;9.10e-07;15!UBERON:0004819;9.10e-07;15!UBERON:0001285;9.10e-07;15!UBERON:0007684;9.10e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.21e-12,76;UBERON:0001474,4.13e-11,82;UBERON:0004765,7.08e-11,90;UBERON:0002405,2.23e-10,93;UBERON:0001434,2.85e-09,100;UBERON:0003081,5.58e-09,203;UBERON:0002390,1.68e-08,98;UBERON:0003061,1.68e-08,98;UBERON:0002193,3.15e-08,108;UBERON:0001281,1.66e-07,2;UBERON:0003497,1.66e-07,2;UBERON:0003909,1.66e-07,2;UBERON:0003835,1.66e-07,2;UBERON:0010532,2.57e-07,7;UBERON:0000074,2.57e-07,7;UBERON:0001229,2.57e-07,7;UBERON:0001230,2.57e-07,7;UBERON:0003220,2.57e-07,7;UBERON:0005749,2.57e-07,7;UBERON:0004199,2.57e-07,7;UBERON:0004209,2.57e-07,7;UBERON:0004198,2.57e-07,7;UBERON:0000058,4.83e-07,19;UBERON:0000353,5.33e-07,15;UBERON:0004211,6.17e-07,15;UBERON:0009773,6.17e-07,15;UBERON:0001231,6.17e-07,15;UBERON:0001285,6.17e-07,15;UBERON:0007684,6.17e-07,15;UBERON:0004208,6.17e-07,15 | |||
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| |||
|short_description=p@chr11:107879993..107880004,- | |||
}} |
Revision as of 15:33, 10 September 2013
Short description: | p@chr11:107879993..107880004, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:107879993..107880004, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.82e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.82e-22 | 42 |
defensive cell | 6.44e-21 | 48 |
phagocyte | 6.44e-21 | 48 |
monopoietic cell | 2.05e-17 | 59 |
monocyte | 2.05e-17 | 59 |
monoblast | 2.05e-17 | 59 |
promonocyte | 2.05e-17 | 59 |
macrophage dendritic cell progenitor | 1.12e-16 | 61 |
myeloid lineage restricted progenitor cell | 5.02e-15 | 66 |
myeloid leukocyte | 7.30e-15 | 72 |
granulocyte monocyte progenitor cell | 1.00e-14 | 67 |
glomerular endothelial cell | 3.02e-10 | 5 |
nongranular leukocyte | 3.53e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 1.45e-08 | 120 |
myeloid cell | 3.55e-08 | 108 |
common myeloid progenitor | 3.55e-08 | 108 |
leukocyte | 1.03e-07 | 136 |
endothelial cell of sinusoid | 1.66e-07 | 2 |
endothelial cell of hepatic sinusoid | 1.66e-07 | 2 |
glomerular cell | 2.57e-07 | 7 |
kidney corpuscule cell | 2.57e-07 | 7 |
epithelial cell of nephron | 6.17e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.21e-12 | 76 |
bone element | 4.13e-11 | 82 |
skeletal element | 7.08e-11 | 90 |
immune system | 2.23e-10 | 93 |
skeletal system | 2.85e-09 | 100 |
lateral plate mesoderm | 5.58e-09 | 203 |
hematopoietic system | 1.68e-08 | 98 |
blood island | 1.68e-08 | 98 |
hemolymphoid system | 3.15e-08 | 108 |
hepatic sinusoid | 1.66e-07 | 2 |
abdomen blood vessel | 1.66e-07 | 2 |
sinusoid | 1.66e-07 | 2 |
abdominal segment blood vessel | 1.66e-07 | 2 |
primitive nephron | 2.57e-07 | 7 |
renal glomerulus | 2.57e-07 | 7 |
renal corpuscle | 2.57e-07 | 7 |
glomerular capsule | 2.57e-07 | 7 |
metanephric mesenchyme | 2.57e-07 | 7 |
glomerular tuft | 2.57e-07 | 7 |
S-shaped body | 2.57e-07 | 7 |
renal vesicle | 2.57e-07 | 7 |
comma-shaped body | 2.57e-07 | 7 |
duct | 4.83e-07 | 19 |
parenchyma | 5.33e-07 | 15 |
nephron epithelium | 6.17e-07 | 15 |
renal tubule | 6.17e-07 | 15 |
nephron tubule | 6.17e-07 | 15 |
nephron | 6.17e-07 | 15 |
uriniferous tubule | 6.17e-07 | 15 |
nephrogenic mesenchyme | 6.17e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.