FFCP PHASE1:Hg19::chr14:24868109..24868124,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57523|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20165|TSSclassifier=S|UniProt=Q9P2P1|association_with_transcript=117bp_to_ENST00000382554,NM_025081,uc001wpf.3_5end|description=CAGE_peak_3_at_NYNRIN_5end|id=chr14:24868109..24868124,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002577;1.09e-14;3!CL:0002575;3.91e-11;2!CL:0000349;5.68e-11;19!CL:0002536;4.39e-10;2!CL:0002549;4.39e-10;2|ontology_enrichment_celltype_v019_2=CL:0002577,3.26e-15,3;CL:0000349,3.85e-11,19;CL:0002575,3.94e-11,2;CL:0002536,7.01e-10,2;CL:0002549,1.05e-09,2|ontology_enrichment_development_v019=UBERON:0006215;5.41e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000924!1.69e-08!173;UBERON:0006601!1.69e-08!173;UBERON:0000468!4.39e-08!659;UBERON:0004121!9.92e-08!169;UBERON:0000119!4.62e-07!312;UBERON:0000064!6.18e-07!219|ontology_enrichment_uberon_v019=UBERON:0001987;3.88e-11;4!UBERON:0000305;1.36e-10;7!UBERON:0005629;4.39e-10;2!UBERON:0005358;4.39e-10;2!UBERON:0001886;4.39e-10;2!UBERON:0004086;4.39e-10;2!UBERON:0005282;4.39e-10;2!UBERON:0005281;4.39e-10;2!UBERON:0000478;1.72e-08;24!UBERON:0005631;1.94e-07;10!UBERON:0000158;1.94e-07;10!UBERON:0002037;2.31e-07;6!UBERON:0006947;5.41e-07;3!UBERON:0004054;5.41e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.85e-15,14;UBERON:0000158,1.85e-15,14;UBERON:0001987,1.58e-11,4;UBERON:0004340,1.58e-11,4;UBERON:0000305,1.41e-10,7;UBERON:0005629,1.05e-09,2;UBERON:0005358,1.05e-09,2;UBERON:0001886,1.05e-09,2;UBERON:0004086,1.05e-09,2;UBERON:0005282,1.05e-09,2;UBERON:0005281,1.05e-09,2;UBERON:0004871,2.88e-09,8;UBERON:0000478,1.28e-08,24;UBERON:0002037,1.48e-07,6;UBERON:0006215,1.48e-07,6;UBERON:0006947,3.66e-07,3;UBERON:0004054,3.66e-07,3;UBERON:0003124,9.32e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.79120467188971,1.09220686065086,1.31883489114227,0,0,0,0.602694528023977,0,0,1.23121058076788,0.204000691244253,0,0.572471974262113,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,0,0,0,0,0,0.283604451492204,0.443458794925128,0.43917392846563,0.130979075497713,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0.860234595106124,0,0.56530794192401,0,0,0,0,0,0.33472061276467,0,0,0,0.367663080345869,0,0.267899184852239,0,0.225222960966644,0,0.949265659568129,0.183201743930407,0,0,0.436094052142534,0,0,0.132409180813219,0,0,0,0,0,0.622422070799533,0.134710672069688,0.326923806226917,1.05950199351452,1.15235184896,0,0,0,0,0.117434498643765,0,0.280901613404497,0,0.245668634623536,0,0,0.247266929278557,0.910161361938026,0,0,0,0,0,0,0.150238058906597,0,0.538168907066586,0.213557388818567,0,0,0.103052529238439,0,0.18611685633159,0,0,0.252433774244115,0.0920498986422993,0.80823028409406,0.355009592516614,0.201504196455281,0.169560592310488,0.193260853163297,0.545492241181669,0,0.731842236777572,0.662648841607426,1.04574548582567,0.725627385107593,0.504641701751257,1.45990943630332,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0,0,0,0.439001141634502,0,0,0.0925884451585296,0,0,0,0.579652024875384,0.70445216541493,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,0.503946384596579,0,0,0,0,0,0.264145302039678,0.207328115540772,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0.285826432630578,0.224262168690721,0.43596006883328,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,1.30139853857622,0,0.335032530668698,0,0,0,0,0.24538298343828,0.500170521059677,0,0,0,0.157702415033935,0,0.300946099727719,2.27407504055985,0,0,0.184369168541703,0.781952530212746,3.32861967686659,3.43143423810856,0,0,0,1.81876542867756,1.66435439510497,2.11673205330776,0,0.153461973288062,0.561320188866147,0.256278298511402,0.511707249066704,0,1.48418066444991,0,0,0.0821271560138091,0,0.116210378459959,0.120859449591622,0.200506470303285,0.0920809889358963,0,0.182091168006717,0.131124414959424,0.451199612907412,0.0770153371044148,0.784349769176855,0,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,0,0.656029291399411,0,0.309123034943167,0,0,0,0.650060246036521,0,0.193341436584244,0,0,0.137836572484531,0.429680979473094,0.580066775656914,0.340906509664404,0,0.165284915360978,0.192190067365106,0.893288987462089,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0.38126038784765,0.255897791311334,0.855877976067841,0.636406495851874,0,0.179872457583315,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0.655894752046633,0.202910376962704,0,0,0.28682270440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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57523 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20165 | |||
|TSSclassifier=S | |||
|UniProt=Q9P2P1 | |||
|association_with_transcript=117bp_to_ENST00000382554,NM_025081,uc001wpf.3_5end | |||
|description=CAGE_peak_3_at_NYNRIN_5end | |||
|id=chr14:24868109..24868124,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002577;1.09e-14;3!CL:0002575;3.91e-11;2!CL:0000349;5.68e-11;19!CL:0002536;4.39e-10;2!CL:0002549;4.39e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,3.26e-15,3;CL:0000349,3.85e-11,19;CL:0002575,3.94e-11,2;CL:0002536,7.01e-10,2;CL:0002549,1.05e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.41e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000924!1.69e-08!173;UBERON:0006601!1.69e-08!173;UBERON:0000468!4.39e-08!659;UBERON:0004121!9.92e-08!169;UBERON:0000119!4.62e-07!312;UBERON:0000064!6.18e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;3.88e-11;4!UBERON:0000305;1.36e-10;7!UBERON:0005629;4.39e-10;2!UBERON:0005358;4.39e-10;2!UBERON:0001886;4.39e-10;2!UBERON:0004086;4.39e-10;2!UBERON:0005282;4.39e-10;2!UBERON:0005281;4.39e-10;2!UBERON:0000478;1.72e-08;24!UBERON:0005631;1.94e-07;10!UBERON:0000158;1.94e-07;10!UBERON:0002037;2.31e-07;6!UBERON:0006947;5.41e-07;3!UBERON:0004054;5.41e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.85e-15,14;UBERON:0000158,1.85e-15,14;UBERON:0001987,1.58e-11,4;UBERON:0004340,1.58e-11,4;UBERON:0000305,1.41e-10,7;UBERON:0005629,1.05e-09,2;UBERON:0005358,1.05e-09,2;UBERON:0001886,1.05e-09,2;UBERON:0004086,1.05e-09,2;UBERON:0005282,1.05e-09,2;UBERON:0005281,1.05e-09,2;UBERON:0004871,2.88e-09,8;UBERON:0000478,1.28e-08,24;UBERON:0002037,1.48e-07,6;UBERON:0006215,1.48e-07,6;UBERON:0006947,3.66e-07,3;UBERON:0004054,3.66e-07,3;UBERON:0003124,9.32e-07,7 | |||
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| |||
|short_description=p3@NYNRIN | |||
}} |
Revision as of 04:12, 11 September 2013
Short description: | p3@NYNRIN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_NYNRIN_5end |
Coexpression cluster: | NA |
Association with transcript: | 117bp_to_ENST00000382554, NM_025081, uc001wpf.3_5end |
EntrezGene: | NYNRIN |
HGNC: | 20165 |
UniProt: | Q9P2P1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 3.26e-15 | 3 |
extraembryonic cell | 3.85e-11 | 19 |
central nervous system pericyte | 3.94e-11 | 2 |
amniotic epithelial cell | 7.01e-10 | 2 |
fibroblast of choroid plexus | 1.05e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.85e-15 | 14 |
membranous layer | 1.85e-15 | 14 |
placenta | 1.58e-11 | 4 |
allantois | 1.58e-11 | 4 |
amnion | 1.41e-10 | 7 |
vascular plexus | 1.05e-09 | 2 |
ventricle of nervous system | 1.05e-09 | 2 |
choroid plexus | 1.05e-09 | 2 |
brain ventricle | 1.05e-09 | 2 |
ventricular system of brain | 1.05e-09 | 2 |
ventricular system of central nervous system | 1.05e-09 | 2 |
somatic layer of lateral plate mesoderm | 2.88e-09 | 8 |
extraembryonic structure | 1.28e-08 | 24 |
cerebellum | 1.48e-07 | 6 |
rhombic lip | 1.48e-07 | 6 |
male genital duct | 3.66e-07 | 3 |
internal male genitalia | 3.66e-07 | 3 |
chorion | 9.32e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.