FFCP PHASE1:Hg19::chr15:63349171..63349210,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7168|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12010|TSSclassifier=N|UniProt=|association_with_transcript=0bp_to_ENST00000561395_5end|coexpression_cluster_id=C1041|description=CAGE_peak_9_at_TPM1_5end|id=chr15:63349171..63349210,+|ontology_enrichment_celltype=CL:0000055!9.47e-15!180;CL:0000192!2.21e-09!42;CL:0000514!2.21e-09!42;CL:0000359!3.14e-09!32;CL:0000680!6.91e-08!57;CL:0000056!6.91e-08!57;CL:0000355!6.91e-08!57;CL:0000393!1.14e-07!60;CL:0000211!1.14e-07!60;CL:0000187!1.53e-07!54;CL:0000183!2.64e-07!59;CL:0000057!3.77e-07!75|ontology_enrichment_celltype_v019=CL:0000359;1.13e-10;32|ontology_enrichment_celltype_v019_2=CL:0000359,5.60e-11,32;CL:0000192,1.01e-08,43;CL:0000514,1.01e-08,43;CL:0000057,7.89e-08,76|ontology_enrichment_development_v019=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002385!2.01e-10!63;UBERON:0001015!2.01e-10!63;UBERON:0000383!2.01e-10!63;UBERON:0000468!1.11e-09!659;UBERON:0001134!1.13e-09!61;UBERON:0002036!1.13e-09!61;UBERON:0003082!1.13e-09!61;UBERON:0005256!4.68e-09!143;UBERON:0000481!1.40e-08!347;UBERON:0000475!1.85e-08!365;UBERON:0000914!2.08e-08!83;UBERON:0002329!2.08e-08!83;UBERON:0003077!2.08e-08!83;UBERON:0003059!2.08e-08!83;UBERON:0007282!2.08e-08!83;UBERON:0009618!2.08e-08!83;UBERON:0007285!2.08e-08!83;UBERON:0004872!6.10e-08!84;UBERON:0002100!1.04e-07!216;UBERON:0001637!1.36e-07!42;UBERON:0003509!1.36e-07!42;UBERON:0004572!1.36e-07!42;UBERON:0004290!1.61e-07!70;UBERON:0007100!2.30e-07!27;UBERON:0000486!2.88e-07!82;UBERON:0003103!4.26e-07!69;UBERON:0004573!5.16e-07!33;UBERON:0004571!5.16e-07!33;UBERON:0003914!5.23e-07!118;UBERON:0000467!5.40e-07!625;UBERON:0000480!7.98e-07!626|ontology_enrichment_uberon_v019=UBERON:0007100;1.25e-07;25!UBERON:0004573;2.38e-07;33!UBERON:0004571;2.38e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0001637,8.58e-09,42;UBERON:0003509,8.58e-09,42;UBERON:0004572,8.58e-09,42;UBERON:0004573,1.52e-08,33;UBERON:0004571,1.52e-08,33;UBERON:0002385,1.71e-08,64;UBERON:0001015,1.71e-08,64;UBERON:0000383,1.71e-08,64;UBERON:0001134,1.17e-07,62;UBERON:0002036,1.17e-07,62;UBERON:0003082,1.17e-07,62;UBERON:0007100,2.83e-07,27;UBERON:0004872,3.84e-07,83|phase1_expression=2.90685406832891,5.78071414505655,3.66481450649525,7.00513088471913,6.25745532198203,7.85104671690332,0,0.631719873426831,0,0.491467873003018,0,1.96597234917155,1.58260186937072,0.37129905888014,0.994192127183747,7.39557661096953,4.21886169616784,6.57279081348636,3.41552959153355,0,1.63200552995402,0.313454721478088,2.57612388417951,0.958120975510189,2.38531015230125,0,0,0.0787107813136792,0,0,0.464448369948228,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0.605399502633369,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0.144824403882799,4.87613732627923,0,0.511450247374121,2.1686349143074,1.00267582127178,2.462390822334,0.795285947051099,1.45990461090791,2.07976597760949,3.99112915432615,3.33772185633879,0.589405839739707,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0,0,0.419499436209906,0.275118041940067,0.417989933073621,0,0,0.33472061276467,0,0,0.488124115096339,0,4.0507097394088,0.0892997282840798,0.44905874525234,0.112611480483322,0,0,0.366403487860815,0,0,0.436094052142534,10.933382937297,1.64619665163954,1.32409180813219,0.573673241497627,1.77334191099179,5.60677600142307,6.4049397437823,4.68668341992604,0,1.0776853765575,0.817309515567294,0.908144565869588,1.72852777344,0,0,0,0.298897361103602,0.117434498643765,0.161872944368132,0.702254033511242,0,0.491337269247072,0.103325781175765,1.18800285728205,2.47266929278557,0,1.43723628363248,0,0.125118519871964,0.277064115484183,2.19488810440419,7.35570709917647,1.35214253015937,1.24775401476023,3.22901344239952,2.13557388818567,3.39091041855299,1.20036438433761,1.54578793857658,1.8034837803194,2.23340227597908,1.5189869901714,5.16416127354353,3.02920529092937,1.47279837827679,0.646584227275248,4.61512470271599,4.53384442024381,2.20428770003634,0.386521706326594,0.545492241181669,0.573609190778008,1.58565817968474,0.662648841607426,1.62671520017326,0.518305275076852,1.51392510525377,0.36497735907583,0,0,1.38134921352481,0.928735856063958,0,1.53798840051797,0.842923450390509,1.20505514941741,0.661763836394364,1.08939722046203,1.18635309555548,0.808987848960987,0.98110732562673,0,0,0,0,4.41026134156626,1.26755034821831,0,0.590789906681404,0,0.122988438543114,1.20097467208968,0.658501712451753,0,0.402115889646523,0.185176890317059,0,0,4.3299402607582,0.463721619900307,2.34817388471643,0.288732895522148,0.462985512576611,1.33177906564219,0,0,0.246217006087397,0,0,1.87467667973554,2.01578553838631,0.283550194484773,0.268675568108545,0.290633938513962,0,0.492663237895943,0,0,0.1441199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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7168 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12010 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000561395_5end | |||
|coexpression_cluster_id=C1041 | |||
|description=CAGE_peak_9_at_TPM1_5end | |||
|id=chr15:63349171..63349210,+ | |||
|ontology_enrichment_celltype=CL:0000055!9.47e-15!180;CL:0000192!2.21e-09!42;CL:0000514!2.21e-09!42;CL:0000359!3.14e-09!32;CL:0000680!6.91e-08!57;CL:0000056!6.91e-08!57;CL:0000355!6.91e-08!57;CL:0000393!1.14e-07!60;CL:0000211!1.14e-07!60;CL:0000187!1.53e-07!54;CL:0000183!2.64e-07!59;CL:0000057!3.77e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.13e-10;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,5.60e-11,32;CL:0000192,1.01e-08,43;CL:0000514,1.01e-08,43;CL:0000057,7.89e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!2.01e-10!63;UBERON:0001015!2.01e-10!63;UBERON:0000383!2.01e-10!63;UBERON:0000468!1.11e-09!659;UBERON:0001134!1.13e-09!61;UBERON:0002036!1.13e-09!61;UBERON:0003082!1.13e-09!61;UBERON:0005256!4.68e-09!143;UBERON:0000481!1.40e-08!347;UBERON:0000475!1.85e-08!365;UBERON:0000914!2.08e-08!83;UBERON:0002329!2.08e-08!83;UBERON:0003077!2.08e-08!83;UBERON:0003059!2.08e-08!83;UBERON:0007282!2.08e-08!83;UBERON:0009618!2.08e-08!83;UBERON:0007285!2.08e-08!83;UBERON:0004872!6.10e-08!84;UBERON:0002100!1.04e-07!216;UBERON:0001637!1.36e-07!42;UBERON:0003509!1.36e-07!42;UBERON:0004572!1.36e-07!42;UBERON:0004290!1.61e-07!70;UBERON:0007100!2.30e-07!27;UBERON:0000486!2.88e-07!82;UBERON:0003103!4.26e-07!69;UBERON:0004573!5.16e-07!33;UBERON:0004571!5.16e-07!33;UBERON:0003914!5.23e-07!118;UBERON:0000467!5.40e-07!625;UBERON:0000480!7.98e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;1.25e-07;25!UBERON:0004573;2.38e-07;33!UBERON:0004571;2.38e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,8.58e-09,42;UBERON:0003509,8.58e-09,42;UBERON:0004572,8.58e-09,42;UBERON:0004573,1.52e-08,33;UBERON:0004571,1.52e-08,33;UBERON:0002385,1.71e-08,64;UBERON:0001015,1.71e-08,64;UBERON:0000383,1.71e-08,64;UBERON:0001134,1.17e-07,62;UBERON:0002036,1.17e-07,62;UBERON:0003082,1.17e-07,62;UBERON:0007100,2.83e-07,27;UBERON:0004872,3.84e-07,83 | |||
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| |||
|short_description=p9@TPM1 | |||
}} |
Revision as of 07:45, 11 September 2013
Short description: | p9@TPM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_TPM1_5end |
Coexpression cluster: | C1041_heart_hepatic_left_mesodermal_smooth_spindle_skeletal |
Association with transcript: | 0bp_to_ENST00000561395_5end |
EntrezGene: | TPM1 |
HGNC: | 12010 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 5.60e-11 | 32 |
smooth muscle cell | 1.01e-08 | 43 |
smooth muscle myoblast | 1.01e-08 | 43 |
fibroblast | 7.89e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
artery | 8.58e-09 | 42 |
arterial blood vessel | 8.58e-09 | 42 |
arterial system | 8.58e-09 | 42 |
systemic artery | 1.52e-08 | 33 |
systemic arterial system | 1.52e-08 | 33 |
muscle tissue | 1.71e-08 | 64 |
musculature | 1.71e-08 | 64 |
musculature of body | 1.71e-08 | 64 |
skeletal muscle tissue | 1.17e-07 | 62 |
striated muscle tissue | 1.17e-07 | 62 |
myotome | 1.17e-07 | 62 |
primary circulatory organ | 2.83e-07 | 27 |
splanchnic layer of lateral plate mesoderm | 3.84e-07 | 83 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.