FFCP PHASE1:Hg19::chr17:2169470..2169484,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23293|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17809|TSSclassifier=W|UniProt=Q86US8|association_with_transcript=8bp_to_BC064916_5end|coexpression_cluster_id=C18|description=CAGE_peak_10_at_SMG6_5end|id=chr17:2169470..2169484,-|ontology_enrichment_celltype=CL:0000084!7.17e-40!25;CL:0000827!7.17e-40!25;CL:0000838!1.61e-34!52;CL:0000542!1.17e-33!53;CL:0000051!1.17e-33!53;CL:0000791!2.13e-29!18;CL:0000789!2.13e-29!18;CL:0002420!2.13e-29!18;CL:0002419!2.13e-29!18;CL:0000790!2.13e-29!18;CL:0000988!1.97e-21!182;CL:0000037!2.02e-20!172;CL:0000566!2.02e-20!172;CL:0000738!1.63e-19!140;CL:0002087!2.16e-18!119;CL:0002032!6.26e-17!165;CL:0000837!6.26e-17!165;CL:0000625!7.37e-17!11;CL:0002031!5.51e-16!124;CL:0000624!2.41e-12!6;CL:0000080!4.28e-11!6;CL:0000898!4.12e-07!3|ontology_enrichment_celltype_v019=CL:0000791;5.63e-49;18!CL:0000789;5.63e-49;18!CL:0002419;5.63e-49;18!CL:0000084;1.61e-44;25!CL:0000624;1.06e-24;6!CL:0000625;4.82e-23;11!CL:0000542;4.74e-18;53!CL:0000898;1.53e-13;3!CL:0000815;2.85e-09;2!CL:0000792;2.85e-09;2!CL:0002677;2.85e-09;2|ontology_enrichment_celltype_v019_2=CL:0000791,2.59e-49,18;CL:0000789,2.59e-49,18;CL:0002420,2.59e-49,18;CL:0002419,2.59e-49,18;CL:0000790,2.59e-49,18;CL:0000084,8.13e-45,25;CL:0000827,8.13e-45,25;CL:0000838,2.30e-37,52;CL:0000542,1.49e-36,53;CL:0000051,1.49e-36,53;CL:0000624,5.90e-25,6;CL:0000625,3.81e-23,11;CL:0002087,1.37e-16,115;CL:0000738,8.17e-16,136;CL:0000988,5.26e-14,177;CL:0000898,1.32e-13,3;CL:0002031,6.49e-13,120;CL:0000037,9.82e-13,168;CL:0002032,3.03e-10,161;CL:0000837,3.03e-10,161;CL:0000893,3.42e-10,2;CL:0002489,3.42e-10,2;CL:0000809,3.42e-10,2;CL:0000808,3.42e-10,2;CL:0000894,3.42e-10,2;CL:0000806,3.42e-10,2;CL:0000807,3.42e-10,2;CL:0000805,3.42e-10,2;CL:0002425,3.42e-10,2;CL:0000815,2.52e-09,2;CL:0000792,2.52e-09,2;CL:0002677,2.52e-09,2|ontology_enrichment_development_v019=CL:0000790;5.63e-49;18!CL:0000051;4.74e-18;53!CL:0002425;3.57e-10;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!1.49e-15!15;UBERON:0000179!1.49e-15!15;UBERON:0000463!1.49e-15!15;UBERON:0004177!2.49e-13!7;UBERON:0002370!6.90e-09!4;UBERON:0005058!6.90e-09!4;UBERON:0009113!6.90e-09!4;UBERON:0003295!6.90e-09!4;UBERON:0005562!6.90e-09!4;UBERON:0002193!4.35e-07!112;UBERON:0002390!4.67e-07!102;UBERON:0003061!4.67e-07!102|ontology_enrichment_uberon_v019=UBERON:0002370;5.34e-09;2!UBERON:0005058;5.34e-09;2!UBERON:0009113;5.34e-09;2!UBERON:0004177;5.05e-08;5!UBERON:0005057;5.05e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.90e-17,4;UBERON:0005058,1.90e-17,4;UBERON:0009113,1.90e-17,4;UBERON:0003295,1.90e-17,4;UBERON:0005562,1.90e-17,4;UBERON:0004177,2.80e-15,7;UBERON:0005057,2.80e-15,7;UBERON:0003351,1.15e-11,6;UBERON:0000974,5.11e-07,10;UBERON:0003408,5.11e-07,10;UBERON:0001042,5.11e-07,10;UBERON:0009145,5.11e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20936304141395,2.79142004129816,3.30585281517453,1.18009283054671,0,0.154816123316076,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0.868043482863407,0.447830948479849,0,0,0,0,0,0,0,0,0.28769239232215,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65156653411535,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800791974072025,0,0,0,0.569212969109448,0,0,0,0,0,1.96709770113833,1.57204305099666,2.05601498999509,3.67810289859492,2.93330039970231,4.73447805734733,0,2.89667187901451,1.17842362989935,0.221533894583621,0.270803863765016,2.5618263945135,2.08094956095805,5.26201294731764,4.69795030235942,3.18783394308558,6.67289534229272,5.88589821797369,6.27213142829861,5.21222976408804,5.3650869104269,3.4362744548263,4.30133476433155,2.86708872891687,1.95325036156926,0.950452044448374,0.752875595388864,2.68771883424279,0,2.36777252044017,4.10563998460523,1.41124720257313,1.87208137048455,1.01377082717959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616339038092582,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59549090373462,0.591092280605782,2.58753089831421,1.41177339907723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.07857100409308,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.01489521846434,0.764637207142375,0.569647187174163,0,0.822724546172388,0.648473311192717,0,0.79312517629427,0,0,0,0,0,1.4939787103167,0.318852545457645,0,0.5745161103971,0,0,0.84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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23293 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17809 | |||
|TSSclassifier=W | |||
|UniProt=Q86US8 | |||
|association_with_transcript=8bp_to_BC064916_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_10_at_SMG6_5end | |||
|id=chr17:2169470..2169484,- | |||
|ontology_enrichment_celltype=CL:0000084!7.17e-40!25;CL:0000827!7.17e-40!25;CL:0000838!1.61e-34!52;CL:0000542!1.17e-33!53;CL:0000051!1.17e-33!53;CL:0000791!2.13e-29!18;CL:0000789!2.13e-29!18;CL:0002420!2.13e-29!18;CL:0002419!2.13e-29!18;CL:0000790!2.13e-29!18;CL:0000988!1.97e-21!182;CL:0000037!2.02e-20!172;CL:0000566!2.02e-20!172;CL:0000738!1.63e-19!140;CL:0002087!2.16e-18!119;CL:0002032!6.26e-17!165;CL:0000837!6.26e-17!165;CL:0000625!7.37e-17!11;CL:0002031!5.51e-16!124;CL:0000624!2.41e-12!6;CL:0000080!4.28e-11!6;CL:0000898!4.12e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.63e-49;18!CL:0000789;5.63e-49;18!CL:0002419;5.63e-49;18!CL:0000084;1.61e-44;25!CL:0000624;1.06e-24;6!CL:0000625;4.82e-23;11!CL:0000542;4.74e-18;53!CL:0000898;1.53e-13;3!CL:0000815;2.85e-09;2!CL:0000792;2.85e-09;2!CL:0002677;2.85e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.59e-49,18;CL:0000789,2.59e-49,18;CL:0002420,2.59e-49,18;CL:0002419,2.59e-49,18;CL:0000790,2.59e-49,18;CL:0000084,8.13e-45,25;CL:0000827,8.13e-45,25;CL:0000838,2.30e-37,52;CL:0000542,1.49e-36,53;CL:0000051,1.49e-36,53;CL:0000624,5.90e-25,6;CL:0000625,3.81e-23,11;CL:0002087,1.37e-16,115;CL:0000738,8.17e-16,136;CL:0000988,5.26e-14,177;CL:0000898,1.32e-13,3;CL:0002031,6.49e-13,120;CL:0000037,9.82e-13,168;CL:0002032,3.03e-10,161;CL:0000837,3.03e-10,161;CL:0000893,3.42e-10,2;CL:0002489,3.42e-10,2;CL:0000809,3.42e-10,2;CL:0000808,3.42e-10,2;CL:0000894,3.42e-10,2;CL:0000806,3.42e-10,2;CL:0000807,3.42e-10,2;CL:0000805,3.42e-10,2;CL:0002425,3.42e-10,2;CL:0000815,2.52e-09,2;CL:0000792,2.52e-09,2;CL:0002677,2.52e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000790;5.63e-49;18!CL:0000051;4.74e-18;53!CL:0002425;3.57e-10;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.49e-15!15;UBERON:0000179!1.49e-15!15;UBERON:0000463!1.49e-15!15;UBERON:0004177!2.49e-13!7;UBERON:0002370!6.90e-09!4;UBERON:0005058!6.90e-09!4;UBERON:0009113!6.90e-09!4;UBERON:0003295!6.90e-09!4;UBERON:0005562!6.90e-09!4;UBERON:0002193!4.35e-07!112;UBERON:0002390!4.67e-07!102;UBERON:0003061!4.67e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.34e-09;2!UBERON:0005058;5.34e-09;2!UBERON:0009113;5.34e-09;2!UBERON:0004177;5.05e-08;5!UBERON:0005057;5.05e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.90e-17,4;UBERON:0005058,1.90e-17,4;UBERON:0009113,1.90e-17,4;UBERON:0003295,1.90e-17,4;UBERON:0005562,1.90e-17,4;UBERON:0004177,2.80e-15,7;UBERON:0005057,2.80e-15,7;UBERON:0003351,1.15e-11,6;UBERON:0000974,5.11e-07,10;UBERON:0003408,5.11e-07,10;UBERON:0001042,5.11e-07,10;UBERON:0009145,5.11e-07,10 | |||
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|short_description=p10@SMG6 | |||
}} |
Revision as of 12:37, 11 September 2013
Short description: | p10@SMG6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_SMG6_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 8bp_to_BC064916_5end |
EntrezGene: | SMG6 |
HGNC: | 17809 |
UniProt: | Q86US8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 1.90e-17 | 4 |
hemolymphoid system gland | 1.90e-17 | 4 |
thymic region | 1.90e-17 | 4 |
pharyngeal gland | 1.90e-17 | 4 |
thymus primordium | 1.90e-17 | 4 |
hemopoietic organ | 2.80e-15 | 7 |
immune organ | 2.80e-15 | 7 |
pharyngeal epithelium | 1.15e-11 | 6 |
neck | 5.11e-07 | 10 |
gland of gut | 5.11e-07 | 10 |
chordate pharynx | 5.11e-07 | 10 |
pharyngeal region of foregut | 5.11e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.