FFCP PHASE1:Hg19::chr1:226251172..226251206,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3020,3021|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4764,4765|TSSclassifier=W|UniProt=P84243|association_with_transcript=-471bp_to_ENST00000366813_5end|description=CAGE_peak_4_at_H3F3A_5end,CAGE_peak_6_at_H3F3B_5end|id=chr1:226251172..226251206,+|ontology_enrichment_celltype=CL:0000945!3.19e-28!24;CL:0000826!3.19e-28!24;CL:0000738!4.13e-28!140;CL:0002087!6.65e-28!119;CL:0002031!7.85e-27!124;CL:0000542!1.29e-25!53;CL:0000051!1.29e-25!53;CL:0000838!1.34e-24!52;CL:0002032!4.95e-20!165;CL:0000837!4.95e-20!165;CL:0000037!1.13e-19!172;CL:0000566!1.13e-19!172;CL:0000988!5.86e-18!182;CL:0000236!7.30e-18!14;CL:0002057!1.23e-09!42;CL:0000860!2.94e-09!45;CL:0002322!1.31e-07!5;CL:0000766!2.07e-07!76;CL:0000557!4.82e-07!71|ontology_enrichment_celltype_v019=CL:0000945;5.65e-59;24!CL:0000236;7.34e-45;13!CL:0002322;1.64e-21;5!CL:0000542;2.04e-19;53!CL:0002321;6.05e-07;15!CL:0000540;7.08e-07;6!CL:0000404;7.08e-07;6|ontology_enrichment_celltype_v019_2=CL:0000945,6.21e-59,24;CL:0000826,6.21e-59,24;CL:0000236,9.88e-49,14;CL:0000542,1.26e-29,53;CL:0000051,1.26e-29,53;CL:0000838,2.67e-27,52;CL:0002322,1.75e-21,5;CL:0002087,1.23e-14,115;CL:0000738,1.06e-12,136;CL:0002031,1.88e-12,120;CL:0002032,7.62e-10,161;CL:0000837,7.62e-10,161;CL:0000785,2.06e-09,2;CL:0000955,2.06e-09,2;CL:0000818,2.06e-09,2;CL:0000954,2.06e-09,2;CL:0000816,2.06e-09,2;CL:0000037,3.35e-09,168;CL:0000988,1.88e-08,177;CL:0000540,6.88e-07,6;CL:0000031,6.88e-07,6;CL:0000404,6.88e-07,6|ontology_enrichment_development_v019=CL:0000051;2.04e-19;53!CL:0000954;2.01e-09;2!CL:0000031;7.08e-07;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060058;5.89e-07;10|ontology_enrichment_disease_v019_2=DOID:0060058,6.27e-07,10|ontology_enrichment_uberon=UBERON:0002193!3.87e-09!112;UBERON:0002390!1.49e-08!102;UBERON:0003061!1.49e-08!102;UBERON:0000473!7.28e-07!8|ontology_enrichment_uberon_v019=UBERON:0002106;2.10e-12;3!UBERON:0000473;2.16e-08;8!UBERON:0004177;1.27e-07;5!UBERON:0005057;1.27e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.13e-12,3;UBERON:0004854,3.13e-12,3;UBERON:0009034,3.13e-12,3;UBERON:0002095,3.13e-12,3;UBERON:0004782,3.13e-12,3;UBERON:0003281,3.13e-12,3;UBERON:0009664,3.13e-12,3;UBERON:0002296,3.13e-12,3;UBERON:0005602,3.13e-12,3;UBERON:0001179,3.13e-12,3;UBERON:0006293,3.13e-12,3;UBERON:0000473,1.76e-08,8|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0.369363174230364,0,0,0,0,0,2.21598876669059,0.821005894499457,1.02324015707783,0,0,0,0,0,0,0.232401601740905,3.41206157969812,0,0,0.401088894940283,0.434021741431704,0,0,0,0.290796477559129,0.755751887377619,0,0,0,0,0.28769239232215,0.768482119587302,0.236482229888585,0,1.93645405075148,0,0.188242339542605,0,0.224723484445085,0.306083892370903,0,0.639337125799041,0,0.398927315243264,0,0.290209238628584,1.13477044938228,0,0.75374599577023,1.0429658368404,0,0.605399502633369,0.368277635987565,0,0.633765858935825,0.637812899895131,0,0.112328631146495,0.450530678524519,0,0.570025487482497,0.19891667719909,0,3.51992488922645,6.00752472388345,3.55803701545422,5.12076267079809,2.80277190925209,4.02326707968138,2.64417949113945,1.90810750907073,6.26134266020393,5.28513470433845,7.64546456250458,0,0,0,0.590129310341499,0.786021525498329,0.616804496998528,0.334372990781356,0,0.473447805734733,0,0,0.294605907474837,0.443067789167242,0,0.128091319725675,0.260118695119756,0,0,0,0.296573126324121,0.802622484269139,0,0.113309342697566,0,0.68725489096526,0.759059076058509,0.318565414324097,0.651083453856419,0,0.150575119077773,0.127986611154418,0,0,0,1.00803371612366,0,0.724122019413995,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0,0,0,0.300091096084402,0,0,0,0,0.0974370051611986,0,0.0920498986422993,0.161646056818812,0,0,0.169560592310488,0,0,0,6.34263271873896,3.44577397635862,5.57730925773688,2.59152637538426,5.04641701751257,1.45990943630332,0,0,0,0,0,0,0.168584690078102,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0.088048434013226,0.621984346622316,0,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0.239624855491583,0,0,0,0,0.179060963239896,0,0.394061520403854,0,0.641715181398742,0,0,0,0,0.637938751653163,0.749007023947182,0,0.828831026872071,0,0,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0.232420756919918,0,0,0,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,1.6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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3020,3021 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4764,4765 | |||
|TSSclassifier=W | |||
|UniProt=P84243 | |||
|association_with_transcript=-471bp_to_ENST00000366813_5end | |||
|description=CAGE_peak_4_at_H3F3A_5end,CAGE_peak_6_at_H3F3B_5end | |||
|id=chr1:226251172..226251206,+ | |||
|ontology_enrichment_celltype=CL:0000945!3.19e-28!24;CL:0000826!3.19e-28!24;CL:0000738!4.13e-28!140;CL:0002087!6.65e-28!119;CL:0002031!7.85e-27!124;CL:0000542!1.29e-25!53;CL:0000051!1.29e-25!53;CL:0000838!1.34e-24!52;CL:0002032!4.95e-20!165;CL:0000837!4.95e-20!165;CL:0000037!1.13e-19!172;CL:0000566!1.13e-19!172;CL:0000988!5.86e-18!182;CL:0000236!7.30e-18!14;CL:0002057!1.23e-09!42;CL:0000860!2.94e-09!45;CL:0002322!1.31e-07!5;CL:0000766!2.07e-07!76;CL:0000557!4.82e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000945;5.65e-59;24!CL:0000236;7.34e-45;13!CL:0002322;1.64e-21;5!CL:0000542;2.04e-19;53!CL:0002321;6.05e-07;15!CL:0000540;7.08e-07;6!CL:0000404;7.08e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,6.21e-59,24;CL:0000826,6.21e-59,24;CL:0000236,9.88e-49,14;CL:0000542,1.26e-29,53;CL:0000051,1.26e-29,53;CL:0000838,2.67e-27,52;CL:0002322,1.75e-21,5;CL:0002087,1.23e-14,115;CL:0000738,1.06e-12,136;CL:0002031,1.88e-12,120;CL:0002032,7.62e-10,161;CL:0000837,7.62e-10,161;CL:0000785,2.06e-09,2;CL:0000955,2.06e-09,2;CL:0000818,2.06e-09,2;CL:0000954,2.06e-09,2;CL:0000816,2.06e-09,2;CL:0000037,3.35e-09,168;CL:0000988,1.88e-08,177;CL:0000540,6.88e-07,6;CL:0000031,6.88e-07,6;CL:0000404,6.88e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;2.04e-19;53!CL:0000954;2.01e-09;2!CL:0000031;7.08e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;5.89e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,6.27e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0002193!3.87e-09!112;UBERON:0002390!1.49e-08!102;UBERON:0003061!1.49e-08!102;UBERON:0000473!7.28e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;2.10e-12;3!UBERON:0000473;2.16e-08;8!UBERON:0004177;1.27e-07;5!UBERON:0005057;1.27e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.13e-12,3;UBERON:0004854,3.13e-12,3;UBERON:0009034,3.13e-12,3;UBERON:0002095,3.13e-12,3;UBERON:0004782,3.13e-12,3;UBERON:0003281,3.13e-12,3;UBERON:0009664,3.13e-12,3;UBERON:0002296,3.13e-12,3;UBERON:0005602,3.13e-12,3;UBERON:0001179,3.13e-12,3;UBERON:0006293,3.13e-12,3;UBERON:0000473,1.76e-08,8 | |||
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|short_description=p4@H3F3A,p6@H3F3B | |||
}} |
Revision as of 03:57, 12 September 2013
Short description: | p4@H3F3A, p6@H3F3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_H3F3A_5end, CAGE_peak_6_at_H3F3B_5end |
Coexpression cluster: | NA |
Association with transcript: | -471bp_to_ENST00000366813_5end |
EntrezGene: | 3020,3021 |
HGNC: | 4765&submit=Submit 4764, 4765 |
UniProt: | P84243 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 6.21e-59 | 24 |
pro-B cell | 6.21e-59 | 24 |
B cell | 9.88e-49 | 14 |
lymphocyte | 1.26e-29 | 53 |
common lymphoid progenitor | 1.26e-29 | 53 |
lymphoid lineage restricted progenitor cell | 2.67e-27 | 52 |
embryonic stem cell | 1.75e-21 | 5 |
nongranular leukocyte | 1.23e-14 | 115 |
leukocyte | 1.06e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 1.88e-12 | 120 |
hematopoietic oligopotent progenitor cell | 7.62e-10 | 161 |
hematopoietic multipotent progenitor cell | 7.62e-10 | 161 |
mature B cell | 2.06e-09 | 2 |
pre-B-II cell | 2.06e-09 | 2 |
transitional stage B cell | 2.06e-09 | 2 |
small pre-B-II cell | 2.06e-09 | 2 |
immature B cell | 2.06e-09 | 2 |
hematopoietic stem cell | 3.35e-09 | 168 |
hematopoietic cell | 1.88e-08 | 177 |
neuron | 6.88e-07 | 6 |
neuroblast | 6.88e-07 | 6 |
electrically signaling cell | 6.88e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
spleen | 3.13e-12 | 3 |
gastrointestinal system mesentery | 3.13e-12 | 3 |
stomach region | 3.13e-12 | 3 |
mesentery | 3.13e-12 | 3 |
gastrointestinal system serosa | 3.13e-12 | 3 |
mesentery of stomach | 3.13e-12 | 3 |
gut mesentery | 3.13e-12 | 3 |
dorsal mesentery | 3.13e-12 | 3 |
dorsal mesogastrium | 3.13e-12 | 3 |
peritoneal cavity | 3.13e-12 | 3 |
spleen primordium | 3.13e-12 | 3 |
testis | 1.76e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 6.27e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.