FFCP PHASE1:Mm9::chr10:61885166..61885173,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=216019|HGNC=|MCL_coexpression_id=12|UniProt=|association_with_transcript=-10bp_to_ENSMUST00000159579_5end|description=CAGE_peak_3_at_Hkdc1_5end|id=chr10:61885166..61885173,-|ontology_enrichment_celltype=CL:0002563!4.68e-08!9;CL:0002251!4.68e-08!9|ontology_enrichment_celltype_v019_2=CL:0002563,1.72e-09,9;CL:0002251,1.72e-09,9;CL:0000239,2.31e-08,6;CL:0000677,2.31e-08,6;CL:0000584,2.31e-08,6;CL:0000075,4.35e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.43e-30!43;UBERON:0005409!9.75e-29!59;UBERON:0004119!1.25e-17!130;UBERON:0000925!1.25e-17!130;UBERON:0006595!1.25e-17!130;UBERON:0001007!1.33e-16!128;UBERON:0001555!1.33e-16!128;UBERON:0007026!1.33e-16!128;UBERON:0004921!2.55e-15!126;UBERON:0004185!2.55e-15!126;UBERON:0000344!2.61e-13!15;UBERON:0001242!1.03e-11!13;UBERON:0000060!1.03e-11!13;UBERON:0001262!1.03e-11!13;UBERON:0004786!1.03e-11!13;UBERON:0002108!1.62e-10!16;UBERON:0004923!1.64e-10!24;UBERON:0003350!4.68e-08!9;UBERON:0004808!4.68e-08!9;UBERON:0001277!4.68e-08!9;UBERON:0001045!6.33e-08!13;UBERON:0001264!4.37e-07!12;UBERON:0003922!4.37e-07!12;UBERON:0002114!4.37e-07!12;UBERON:0003923!4.37e-07!12;UBERON:0003924!4.37e-07!12;UBERON:0003921!4.37e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.48e-39,31;UBERON:0005409,2.79e-27,47;UBERON:0000344,1.98e-19,15;UBERON:0001242,2.48e-16,13;UBERON:0001262,2.48e-16,13;UBERON:0004786,2.48e-16,13;UBERON:0004923,1.06e-14,24;UBERON:0004119,4.07e-10,118;UBERON:0000925,4.07e-10,118;UBERON:0006595,4.07e-10,118;UBERON:0001007,1.19e-09,116;UBERON:0001555,1.19e-09,116;UBERON:0007026,1.19e-09,116;UBERON:0003350,1.72e-09,9;UBERON:0004808,1.72e-09,9;UBERON:0001277,1.72e-09,9;UBERON:0002108,1.14e-08,4;UBERON:0001264,2.35e-08,12;UBERON:0004921,2.95e-08,114;UBERON:0000485,1.51e-07,11;UBERON:0000331,7.16e-07,3;UBERON:0002116,7.16e-07,3;UBERON:0001204,7.16e-07,3;UBERON:0001168,7.16e-07,3|phase1_expression=0,8.02643437570531,5.45999087267443,14.215817931421,10.5188103288733,1.00727563147134,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19984845586813,4.35877634027623,5.16808767703518,2.58457197695445,2.15471232685889,8.36103045608045,7.30887376303799,3.76941868114018,0,0,0,0.577703239502549,1.32987716286794,2.04169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,0,0.173485326766136,0.608930956624282,0,0,0,0,6.42706916109372,0,0,0,0,0,5.59175283654366,0,0,4.85368404896324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360124259610698,0.753524089178575,2.58538696775046,3.84341160854549,3.09215691047105,0.258703370739016,0.862271971731369,0.756424320671277,0.351902248327898,0.43839146485515,0.278047249225598,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91256348951394,6.61126416658861,0,0.464473343720877,1.41754207454303,2.01683524623343,2.89091456998331,2.47293313946327,5.69434873853414,3.78807595865225,3.01602250560323,3.97912944082302,2.72949721966768,4.49409704327111,5.40345124686736,6.57166201739412,0,0.342745537829186,0,0,0,0.0701358198903186,0.252946148497029,0.295220295959204,0.470996183524124,0,0,0,0.196558995113203,1.12431056192427,0.405720242777006,0.964708639009667,2.5462585178142,0.287696137450811,0,0.274561413188081,0,0,0,0,0,0,0.369506380333209,0.189491411770485,0.325929952884052,0,0.234690248288502,0.167506257441816,0.238043640886014,0.390267295715598,0.315270288212382,0.44292937929755,0.318909537314974,0.163863314715738,0.345369963731791,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32745138339963,0.242780636154981,4.23252979750651,4.52652191414155,5.31543407185391,5.53383266299069,2.32585463851399,0.363533729477506,2.49548164869305,0.316036757935816,2.10837217149998,0,0,0,0,0,0,0,0,0,0.469343416127421,1.0591603543191,0,0,0,0.120625849856312,0,0,6.12109756922687,0,0,0.206386867963223,0,0,0,0,0,0,0,0,0.632671987162271,0.609958401380546,0.432021363287205,1.25452977608681,0.436725127492355,0.809186078308924,0.330613822901344,0,2.85152941241944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0.170733605754134,0.486213434136588,0,0.367687016900028,0.44449345560323,0,0,0.252697211763798,1.01391719956096,0.377252682772152,0.280924522409647,0.256100609619477,0.229741875822453,0,0,0.77163688185482,0.824171801606613,0.294397840268795,0,0,0,0,0.282328141245992,0.0846146078916765,0,0,0.407412341537585,1.12228454331548,0.355905054372522,0.492522411877817,0,0.154936841185966,0.385813221962283,0,0,0.859484216193193,0,0,0|short_description=p3@Hkdc1}} | ||
|EntrezGene=216019 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt= | |||
|association_with_transcript=-10bp_to_ENSMUST00000159579_5end | |||
|description=CAGE_peak_3_at_Hkdc1_5end | |||
|id=chr10:61885166..61885173,- | |||
|ontology_enrichment_celltype=CL:0002563!4.68e-08!9;CL:0002251!4.68e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.72e-09,9;CL:0002251,1.72e-09,9;CL:0000239,2.31e-08,6;CL:0000677,2.31e-08,6;CL:0000584,2.31e-08,6;CL:0000075,4.35e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.43e-30!43;UBERON:0005409!9.75e-29!59;UBERON:0004119!1.25e-17!130;UBERON:0000925!1.25e-17!130;UBERON:0006595!1.25e-17!130;UBERON:0001007!1.33e-16!128;UBERON:0001555!1.33e-16!128;UBERON:0007026!1.33e-16!128;UBERON:0004921!2.55e-15!126;UBERON:0004185!2.55e-15!126;UBERON:0000344!2.61e-13!15;UBERON:0001242!1.03e-11!13;UBERON:0000060!1.03e-11!13;UBERON:0001262!1.03e-11!13;UBERON:0004786!1.03e-11!13;UBERON:0002108!1.62e-10!16;UBERON:0004923!1.64e-10!24;UBERON:0003350!4.68e-08!9;UBERON:0004808!4.68e-08!9;UBERON:0001277!4.68e-08!9;UBERON:0001045!6.33e-08!13;UBERON:0001264!4.37e-07!12;UBERON:0003922!4.37e-07!12;UBERON:0002114!4.37e-07!12;UBERON:0003923!4.37e-07!12;UBERON:0003924!4.37e-07!12;UBERON:0003921!4.37e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.48e-39,31;UBERON:0005409,2.79e-27,47;UBERON:0000344,1.98e-19,15;UBERON:0001242,2.48e-16,13;UBERON:0001262,2.48e-16,13;UBERON:0004786,2.48e-16,13;UBERON:0004923,1.06e-14,24;UBERON:0004119,4.07e-10,118;UBERON:0000925,4.07e-10,118;UBERON:0006595,4.07e-10,118;UBERON:0001007,1.19e-09,116;UBERON:0001555,1.19e-09,116;UBERON:0007026,1.19e-09,116;UBERON:0003350,1.72e-09,9;UBERON:0004808,1.72e-09,9;UBERON:0001277,1.72e-09,9;UBERON:0002108,1.14e-08,4;UBERON:0001264,2.35e-08,12;UBERON:0004921,2.95e-08,114;UBERON:0000485,1.51e-07,11;UBERON:0000331,7.16e-07,3;UBERON:0002116,7.16e-07,3;UBERON:0001204,7.16e-07,3;UBERON:0001168,7.16e-07,3 | |||
|phase1_expression=0,8.02643437570531,5.45999087267443,14.215817931421,10.5188103288733,1.00727563147134,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19984845586813,4.35877634027623,5.16808767703518,2.58457197695445,2.15471232685889,8.36103045608045,7.30887376303799,3.76941868114018,0,0,0,0.577703239502549,1.32987716286794,2.04169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,0,0.173485326766136,0.608930956624282,0,0,0,0,6.42706916109372,0,0,0,0,0,5.59175283654366,0,0,4.85368404896324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360124259610698,0.753524089178575,2.58538696775046,3.84341160854549,3.09215691047105,0.258703370739016,0.862271971731369,0.756424320671277,0.351902248327898,0.43839146485515,0.278047249225598,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91256348951394,6.61126416658861,0,0.464473343720877,1.41754207454303,2.01683524623343,2.89091456998331,2.47293313946327,5.69434873853414,3.78807595865225,3.01602250560323,3.97912944082302,2.72949721966768,4.49409704327111,5.40345124686736,6.57166201739412,0,0.342745537829186,0,0,0,0.0701358198903186,0.252946148497029,0.295220295959204,0.470996183524124,0,0,0,0.196558995113203,1.12431056192427,0.405720242777006,0.964708639009667,2.5462585178142,0.287696137450811,0,0.274561413188081,0,0,0,0,0,0,0.369506380333209,0.189491411770485,0.325929952884052,0,0.234690248288502,0.167506257441816,0.238043640886014,0.390267295715598,0.315270288212382,0.44292937929755,0.318909537314974,0.163863314715738,0.345369963731791,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32745138339963,0.242780636154981,4.23252979750651,4.52652191414155,5.31543407185391,5.53383266299069,2.32585463851399,0.363533729477506,2.49548164869305,0.316036757935816,2.10837217149998,0,0,0,0,0,0,0,0,0,0.469343416127421,1.0591603543191,0,0,0,0.120625849856312,0,0,6.12109756922687,0,0,0.206386867963223,0,0,0,0,0,0,0,0,0.632671987162271,0.609958401380546,0.432021363287205,1.25452977608681,0.436725127492355,0.809186078308924,0.330613822901344,0,2.85152941241944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0.170733605754134,0.486213434136588,0,0.367687016900028,0.44449345560323,0,0,0.252697211763798,1.01391719956096,0.377252682772152,0.280924522409647,0.256100609619477,0.229741875822453,0,0,0.77163688185482,0.824171801606613,0.294397840268795,0,0,0,0,0.282328141245992,0.0846146078916765,0,0,0.407412341537585,1.12228454331548,0.355905054372522,0.492522411877817,0,0.154936841185966,0.385813221962283,0,0,0.859484216193193,0,0,0 | |||
|short_description=p3@Hkdc1 | |||
}} |
Revision as of 17:05, 12 September 2013
Short description: | p3@Hkdc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Hkdc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -10bp_to_ENSMUST00000159579_5end |
EntrezGene: | Hkdc1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.72e-09 | 9 |
epithelial cell of alimentary canal | 1.72e-09 | 9 |
brush border epithelial cell | 2.31e-08 | 6 |
gut absorptive cell | 2.31e-08 | 6 |
enterocyte | 2.31e-08 | 6 |
columnar/cuboidal epithelial cell | 4.35e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.48e-39 | 31 |
gastrointestinal system | 2.79e-27 | 47 |
mucosa | 1.98e-19 | 15 |
intestinal mucosa | 2.48e-16 | 13 |
wall of intestine | 2.48e-16 | 13 |
gastrointestinal system mucosa | 2.48e-16 | 13 |
organ component layer | 1.06e-14 | 24 |
endoderm-derived structure | 4.07e-10 | 118 |
endoderm | 4.07e-10 | 118 |
presumptive endoderm | 4.07e-10 | 118 |
digestive system | 1.19e-09 | 116 |
digestive tract | 1.19e-09 | 116 |
primitive gut | 1.19e-09 | 116 |
epithelium of mucosa | 1.72e-09 | 9 |
gastrointestinal system epithelium | 1.72e-09 | 9 |
intestinal epithelium | 1.72e-09 | 9 |
small intestine | 1.14e-08 | 4 |
pancreas | 2.35e-08 | 12 |
subdivision of digestive tract | 2.95e-08 | 114 |
simple columnar epithelium | 1.51e-07 | 11 |
ileal mucosa | 7.16e-07 | 3 |
ileum | 7.16e-07 | 3 |
mucosa of small intestine | 7.16e-07 | 3 |
wall of small intestine | 7.16e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.