FFCP PHASE1:Mm9::chr12:109661279..109661346,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68519|HGNC=|MCL_coexpression_id=399|UniProt=D6RII3|association_with_transcript=0bp_to_ENSMUST00000130999_5end|description=CAGE_peak_1_at_Eml1_5end|id=chr12:109661279..109661346,+|ontology_enrichment_celltype=CL:0000221!1.54e-07!44;CL:0000133!1.54e-07!44;CL:0002319!4.57e-07!43|ontology_enrichment_celltype_v019_2=CL:0000221,1.38e-07,44;CL:0000133,1.38e-07,44;CL:0002319,4.13e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!8.54e-21!63;UBERON:0003056!1.19e-20!49;UBERON:0004121!3.90e-20!102;UBERON:0000924!3.90e-20!102;UBERON:0006601!3.90e-20!102;UBERON:0002346!2.59e-19!71;UBERON:0003075!2.59e-19!71;UBERON:0007284!2.59e-19!71;UBERON:0000073!1.89e-18!75;UBERON:0001016!1.89e-18!75;UBERON:0001017!2.95e-17!73;UBERON:0005743!2.95e-17!73;UBERON:0001049!1.37e-16!52;UBERON:0005068!1.37e-16!52;UBERON:0006241!1.37e-16!52;UBERON:0007135!1.37e-16!52;UBERON:0002616!1.04e-15!49;UBERON:0000955!1.25e-15!50;UBERON:0006238!1.25e-15!50;UBERON:0003080!1.50e-15!40;UBERON:0002780!2.25e-15!39;UBERON:0001890!2.25e-15!39;UBERON:0006240!2.25e-15!39;UBERON:0002020!6.53e-12!34;UBERON:0002791!7.88e-12!29;UBERON:0003528!7.88e-12!29;UBERON:0001893!7.88e-12!29;UBERON:0000468!2.25e-10!333;UBERON:0000956!2.69e-09!21;UBERON:0001869!2.69e-09!21;UBERON:0000203!2.69e-09!21;UBERON:0000025!9.66e-09!114;UBERON:0004111!1.04e-08!122;UBERON:0000153!2.97e-08!94;UBERON:0000922!5.58e-08!328;UBERON:0007811!2.18e-07!86;UBERON:0002619!2.91e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.03e-21,95;UBERON:0000924,3.03e-21,95;UBERON:0006601,3.03e-21,95;UBERON:0002346,5.77e-21,64;UBERON:0003075,5.77e-21,64;UBERON:0007284,5.77e-21,64;UBERON:0003056,8.40e-21,49;UBERON:0010371,3.03e-20,73;UBERON:0001016,1.40e-18,75;UBERON:0001017,2.23e-17,73;UBERON:0001049,1.05e-16,52;UBERON:0005068,1.05e-16,52;UBERON:0006241,1.05e-16,52;UBERON:0007135,1.05e-16,52;UBERON:0000073,3.95e-16,54;UBERON:0010314,4.75e-16,92;UBERON:0002616,4.85e-16,46;UBERON:0000955,6.05e-16,47;UBERON:0006238,6.05e-16,47;UBERON:0003080,1.16e-15,40;UBERON:0002780,1.75e-15,39;UBERON:0001890,1.75e-15,39;UBERON:0006240,1.75e-15,39;UBERON:0002020,5.42e-12,34;UBERON:0003528,6.54e-12,29;UBERON:0002791,6.54e-12,29;UBERON:0001893,6.54e-12,29;UBERON:0000956,2.34e-09,21;UBERON:0001869,2.34e-09,21;UBERON:0000203,2.34e-09,21;UBERON:0000025,1.46e-08,114;UBERON:0004111,1.56e-08,122;UBERON:0002619,2.63e-07,17;UBERON:0000922,9.99e-07,320|phase1_expression=18.8975639583657,0,0,0,0,0.671517087647559,0,0,0,0,0,0,0,0,0.333109761815663,0.202475267389826,0,0,0,0,4.42225108785563,0,0,0,0,0,0.430761996159075,0,0.190023419456374,0.252030129759931,0,0,0,0,1.1554064790051,0.997407872150954,0.612508068787107,0,0,0,0,0,0,5.16176953699867,3.95370031756107,4.58866880404204,1.56478268869608,13.0815093828268,12.0827400503959,12.4435135407541,14.4186014274123,17.2503077237966,0,0,0,5.91696702882678,4.01146815914259,5.15672092277442,11.3297218081375,7.40587370980846,10.775133859605,4.40497891689872,5.33576877666684,0.899899717281399,0.988866362566974,0,3.59520132622086,11.1423308543251,13.2722703754851,17.2807601064564,16.1950220240564,8.56952953211411,8.61387309711293,10.534208732486,10.2554653989513,5.51531271966013,7.70811166995721,8.81042632787795,6.91229399653096,12.3973110466382,12.2593442427229,16.6692278578163,6.97957497503452,9.56696437053856,9.47349136216223,7.36571463684169,8.25755748634797,11.5567656411686,13.7064409933063,18.4394606660557,10.1452571045587,2.58127163094416,0,0.539703191637817,0,0.448026887097336,2.10666630197628,8.69194645148094,6.23486411046885,6.71345191569646,15.9153064347649,0,5.09610479413291,7.11066703153331,1.94841936910093,1.52015919285059,0.505524445014783,0.91347103775248,2.07150306917737,6.97678053604676,6.24547176358089,5.78484408793068,7.14908041493781,5.72746034099966,6.58496759959947,5.15233024451669,1.97755974187499,4.04878199375753,0.884610551949874,11.0001457964238,4.41683036920787,1.45462575940567,0,9.36898550436951,10.6817820474862,2.81002760729451,0,0,0,9.8861822007183,18.3000241127451,13.4450156760765,11.6462294528825,12.5300574091862,11.0127663616567,10.5456820994042,15.5814226690984,4.10543003013307,3.79084137650512,10.3116509384372,13.0120442962704,12.644615743841,14.7650946440386,13.4127287873786,22.9283002139975,18.9608306021578,23.2380276908127,15.2634988736019,11.8562396113063,9.07709184805532,7.2139960907219,8.76782929710299,10.8438427197983,9.4028084960985,9.87754254758129,8.55847347319521,0,0,0,4.97101854085205,5.15957331958412,3.96136535214233,4.97163944728941,5.3126342571799,4.31947916084659,5.8133486187602,5.90201483079162,5.02090972178829,4.44311594766397,6.40253109908471,6.48550476366846,5.55559952216263,5.92785311285837,6.71032093801859,12.8276868624118,16.1560241435477,0,0.793351699990633,14.9301775374664,13.7019636397659,9.40732467651281,7.05892336181699,4.89231696458715,5.51654315726422,4.2707615539006,5.92916237006439,5.02670417600539,3.58121649674071,5.26403035221624,2.69645822596266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| ||
|EntrezGene=68519 | |||
|HGNC= | |||
|MCL_coexpression_id=399 | |||
|UniProt=D6RII3 | |||
|association_with_transcript=0bp_to_ENSMUST00000130999_5end | |||
|description=CAGE_peak_1_at_Eml1_5end | |||
|id=chr12:109661279..109661346,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.54e-07!44;CL:0000133!1.54e-07!44;CL:0002319!4.57e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.38e-07,44;CL:0000133,1.38e-07,44;CL:0002319,4.13e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!8.54e-21!63;UBERON:0003056!1.19e-20!49;UBERON:0004121!3.90e-20!102;UBERON:0000924!3.90e-20!102;UBERON:0006601!3.90e-20!102;UBERON:0002346!2.59e-19!71;UBERON:0003075!2.59e-19!71;UBERON:0007284!2.59e-19!71;UBERON:0000073!1.89e-18!75;UBERON:0001016!1.89e-18!75;UBERON:0001017!2.95e-17!73;UBERON:0005743!2.95e-17!73;UBERON:0001049!1.37e-16!52;UBERON:0005068!1.37e-16!52;UBERON:0006241!1.37e-16!52;UBERON:0007135!1.37e-16!52;UBERON:0002616!1.04e-15!49;UBERON:0000955!1.25e-15!50;UBERON:0006238!1.25e-15!50;UBERON:0003080!1.50e-15!40;UBERON:0002780!2.25e-15!39;UBERON:0001890!2.25e-15!39;UBERON:0006240!2.25e-15!39;UBERON:0002020!6.53e-12!34;UBERON:0002791!7.88e-12!29;UBERON:0003528!7.88e-12!29;UBERON:0001893!7.88e-12!29;UBERON:0000468!2.25e-10!333;UBERON:0000956!2.69e-09!21;UBERON:0001869!2.69e-09!21;UBERON:0000203!2.69e-09!21;UBERON:0000025!9.66e-09!114;UBERON:0004111!1.04e-08!122;UBERON:0000153!2.97e-08!94;UBERON:0000922!5.58e-08!328;UBERON:0007811!2.18e-07!86;UBERON:0002619!2.91e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.03e-21,95;UBERON:0000924,3.03e-21,95;UBERON:0006601,3.03e-21,95;UBERON:0002346,5.77e-21,64;UBERON:0003075,5.77e-21,64;UBERON:0007284,5.77e-21,64;UBERON:0003056,8.40e-21,49;UBERON:0010371,3.03e-20,73;UBERON:0001016,1.40e-18,75;UBERON:0001017,2.23e-17,73;UBERON:0001049,1.05e-16,52;UBERON:0005068,1.05e-16,52;UBERON:0006241,1.05e-16,52;UBERON:0007135,1.05e-16,52;UBERON:0000073,3.95e-16,54;UBERON:0010314,4.75e-16,92;UBERON:0002616,4.85e-16,46;UBERON:0000955,6.05e-16,47;UBERON:0006238,6.05e-16,47;UBERON:0003080,1.16e-15,40;UBERON:0002780,1.75e-15,39;UBERON:0001890,1.75e-15,39;UBERON:0006240,1.75e-15,39;UBERON:0002020,5.42e-12,34;UBERON:0003528,6.54e-12,29;UBERON:0002791,6.54e-12,29;UBERON:0001893,6.54e-12,29;UBERON:0000956,2.34e-09,21;UBERON:0001869,2.34e-09,21;UBERON:0000203,2.34e-09,21;UBERON:0000025,1.46e-08,114;UBERON:0004111,1.56e-08,122;UBERON:0002619,2.63e-07,17;UBERON:0000922,9.99e-07,320 | |||
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| |||
|short_description=p1@Eml1 | |||
}} |
Revision as of 22:10, 12 September 2013
Short description: | p1@Eml1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Eml1_5end |
Coexpression cluster: | MCL_coexpression_mm9:399 |
Association with transcript: | 0bp_to_ENSMUST00000130999_5end |
EntrezGene: | Eml1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.38e-07 | 44 |
neurectodermal cell | 1.38e-07 | 44 |
neural cell | 4.13e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.03e-21 | 95 |
ectoderm | 3.03e-21 | 95 |
presumptive ectoderm | 3.03e-21 | 95 |
neurectoderm | 5.77e-21 | 64 |
neural plate | 5.77e-21 | 64 |
presumptive neural plate | 5.77e-21 | 64 |
pre-chordal neural plate | 8.40e-21 | 49 |
ecto-epithelium | 3.03e-20 | 73 |
nervous system | 1.40e-18 | 75 |
central nervous system | 2.23e-17 | 73 |
neural tube | 1.05e-16 | 52 |
neural rod | 1.05e-16 | 52 |
future spinal cord | 1.05e-16 | 52 |
neural keel | 1.05e-16 | 52 |
regional part of nervous system | 3.95e-16 | 54 |
structure with developmental contribution from neural crest | 4.75e-16 | 92 |
regional part of brain | 4.85e-16 | 46 |
brain | 6.05e-16 | 47 |
future brain | 6.05e-16 | 47 |
anterior neural tube | 1.16e-15 | 40 |
regional part of forebrain | 1.75e-15 | 39 |
forebrain | 1.75e-15 | 39 |
future forebrain | 1.75e-15 | 39 |
gray matter | 5.42e-12 | 34 |
brain grey matter | 6.54e-12 | 29 |
regional part of telencephalon | 6.54e-12 | 29 |
telencephalon | 6.54e-12 | 29 |
cerebral cortex | 2.34e-09 | 21 |
cerebral hemisphere | 2.34e-09 | 21 |
pallium | 2.34e-09 | 21 |
tube | 1.46e-08 | 114 |
anatomical conduit | 1.56e-08 | 122 |
regional part of cerebral cortex | 2.63e-07 | 17 |
embryo | 9.99e-07 | 320 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.