FFCP PHASE1:Mm9::chr12:111839697..111839708,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13424|HGNC=|UniProt=Q9JHU4|association_with_transcript=35bp_to_ENSMUST00000018851_5end|description=CAGE_peak_3_at_Dync1h1_5end|id=chr12:111839697..111839708,+|ontology_enrichment_celltype=CL:0000393!1.37e-13!39;CL:0000211!1.37e-13!39;CL:0000540!1.34e-10!33;CL:0000047!1.34e-10!33;CL:0000031!1.34e-10!33;CL:0000404!1.34e-10!33;CL:0000055!3.84e-10!50;CL:0000221!2.43e-08!44;CL:0000133!2.43e-08!44;CL:0002319!2.52e-08!43;CL:0000117!3.09e-08!23;CL:0000337!3.09e-08!23;CL:0002321!5.55e-07!70;CL:0000220!5.55e-07!70|ontology_enrichment_celltype_v019_2=CL:0000393,1.37e-13,39;CL:0000211,1.37e-13,39;CL:0000540,1.34e-10,33;CL:0000047,1.34e-10,33;CL:0000031,1.34e-10,33;CL:0000404,1.34e-10,33;CL:0000221,2.43e-08,44;CL:0000133,2.43e-08,44;CL:0002319,2.52e-08,43;CL:0000117,3.09e-08,23;CL:0000337,3.09e-08,23;CL:0002321,5.42e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.43e-20!75;UBERON:0001016!1.43e-20!75;UBERON:0004121!4.72e-20!102;UBERON:0000924!4.72e-20!102;UBERON:0006601!4.72e-20!102;UBERON:0001017!1.79e-19!73;UBERON:0005743!1.79e-19!73;UBERON:0002346!2.06e-17!71;UBERON:0003075!2.06e-17!71;UBERON:0007284!2.06e-17!71;UBERON:0000033!1.27e-15!63;UBERON:0001049!1.54e-15!52;UBERON:0005068!1.54e-15!52;UBERON:0006241!1.54e-15!52;UBERON:0007135!1.54e-15!52;UBERON:0000955!9.28e-15!50;UBERON:0006238!9.28e-15!50;UBERON:0002616!1.84e-14!49;UBERON:0003056!4.97e-13!49;UBERON:0002020!3.22e-12!34;UBERON:0003080!4.91e-12!40;UBERON:0002780!1.85e-11!39;UBERON:0001890!1.85e-11!39;UBERON:0006240!1.85e-11!39;UBERON:0002791!5.70e-10!29;UBERON:0003528!5.70e-10!29;UBERON:0001893!5.70e-10!29;UBERON:0000956!3.43e-07!21;UBERON:0001869!3.43e-07!21;UBERON:0000203!3.43e-07!21;UBERON:0002021!4.95e-07!10;UBERON:0000411!4.95e-07!10;UBERON:0001950!4.95e-07!10;UBERON:0002619!8.16e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.43e-20,75;UBERON:0004121,7.63e-20,95;UBERON:0000924,7.63e-20,95;UBERON:0006601,7.63e-20,95;UBERON:0010314,1.26e-19,92;UBERON:0001017,1.79e-19,73;UBERON:0002346,1.46e-17,64;UBERON:0003075,1.46e-17,64;UBERON:0007284,1.46e-17,64;UBERON:0000073,7.77e-17,54;UBERON:0010371,1.27e-15,73;UBERON:0001049,1.54e-15,52;UBERON:0005068,1.54e-15,52;UBERON:0006241,1.54e-15,52;UBERON:0007135,1.54e-15,52;UBERON:0003056,4.97e-13,49;UBERON:0000955,6.97e-13,47;UBERON:0006238,6.97e-13,47;UBERON:0002616,1.36e-12,46;UBERON:0002020,3.22e-12,34;UBERON:0003080,4.90e-12,40;UBERON:0002780,1.85e-11,39;UBERON:0001890,1.85e-11,39;UBERON:0006240,1.85e-11,39;UBERON:0003528,5.70e-10,29;UBERON:0002791,5.70e-10,29;UBERON:0001893,5.70e-10,29;UBERON:0000956,3.43e-07,21;UBERON:0001869,3.43e-07,21;UBERON:0000203,3.43e-07,21;UBERON:0002021,4.95e-07,10;UBERON:0000411,4.95e-07,10;UBERON:0001950,4.95e-07,10;UBERON:0002619,8.16e-07,17|phase1_expression=5.44506080156299,21.6364752736404,20.0199665331396,18.7527811010235,16.0286633582831,5.37213670118047,4.43864017131499,1.93684985162364,3.23814060948833,6.31974221069382,0.34243593645101,0.957265907944037,1.88320802924326,1.74840804837995,1.33243904726265,2.42970320867791,1.39912375625629,2.36596624018678,1.37114433605739,1.69755860719212,4.93251082876205,3.87234709683453,2.61199789138935,6.87967418011649,9.1763712426868,6.89078356938024,10.7690499039769,8.18790684206378,6.65081968097309,7.56090389279792,5.76499327703792,1.90509202037889,3.07532393792285,0,2.59966457776147,2.32728503501889,1.63335485009895,3.34825304589526,3.906676722619,4.18818995179039,2.35292595212406,0.683045484958446,1.94204141212461,15.6112054289716,13.8886395770735,9.72797786456912,3.12956537739216,2.39827672018491,3.73466510648602,5.8328969722285,3.77963338388479,2.87505128729943,2.51673909086605,1.45072428402269,2.35265659399725,8.2323019531503,9.16907007804022,10.8291139378263,8.49729135610311,7.40587370980846,5.07065122804943,5.08266798103698,5.33576877666684,4.04954872776629,2.96659908770092,2.1314403448383,2.39680088414724,3.84218305321555,3.83651565541367,4.59020190327748,6.94072372459561,12.5686433137674,8.1721360152097,4.28717797252339,6.22995561618536,4.5960939330501,19.82085857989,21.9622221506523,18.5863905240055,8.70449499019279,10.2466160834699,6.25096044668112,13.1216009530649,9.56696437053856,11.7654650788144,10.606629077052,8.68467252874528,8.38797506213853,9.92013132664711,11.4113055761246,4.05810284182349,0.860423876981386,4.0798280022465,0.539703191637817,1.94932925234301,2.24013443548668,2.38755514223978,3.06774580640504,2.59786004602869,4.24007489412408,4.64783285263046,3.84979432242953,2.54805239706646,0,3.24736561516821,2.78695852022608,3.0331466700887,1.59857431606684,3.88406825470758,5.49235914539852,4.68410382268567,5.1759131313064,6.91846491768175,3.01445281105245,6.93773372100658,2.89033160058254,5.19109432242185,2.4581890676385,1.76922110389975,5.3383060482645,1.54589062922275,2.90925151881133,3.72783522436244,8.19786231632332,6.28340120440365,7.66371165625774,2.51611761462433,2.39961092397363,2.41433431438823,15.7280171375064,9.1500120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| ||
|EntrezGene=13424 | |||
|HGNC= | |||
|UniProt=Q9JHU4 | |||
|association_with_transcript=35bp_to_ENSMUST00000018851_5end | |||
|description=CAGE_peak_3_at_Dync1h1_5end | |||
|id=chr12:111839697..111839708,+ | |||
|ontology_enrichment_celltype=CL:0000393!1.37e-13!39;CL:0000211!1.37e-13!39;CL:0000540!1.34e-10!33;CL:0000047!1.34e-10!33;CL:0000031!1.34e-10!33;CL:0000404!1.34e-10!33;CL:0000055!3.84e-10!50;CL:0000221!2.43e-08!44;CL:0000133!2.43e-08!44;CL:0002319!2.52e-08!43;CL:0000117!3.09e-08!23;CL:0000337!3.09e-08!23;CL:0002321!5.55e-07!70;CL:0000220!5.55e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.37e-13,39;CL:0000211,1.37e-13,39;CL:0000540,1.34e-10,33;CL:0000047,1.34e-10,33;CL:0000031,1.34e-10,33;CL:0000404,1.34e-10,33;CL:0000221,2.43e-08,44;CL:0000133,2.43e-08,44;CL:0002319,2.52e-08,43;CL:0000117,3.09e-08,23;CL:0000337,3.09e-08,23;CL:0002321,5.42e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.43e-20!75;UBERON:0001016!1.43e-20!75;UBERON:0004121!4.72e-20!102;UBERON:0000924!4.72e-20!102;UBERON:0006601!4.72e-20!102;UBERON:0001017!1.79e-19!73;UBERON:0005743!1.79e-19!73;UBERON:0002346!2.06e-17!71;UBERON:0003075!2.06e-17!71;UBERON:0007284!2.06e-17!71;UBERON:0000033!1.27e-15!63;UBERON:0001049!1.54e-15!52;UBERON:0005068!1.54e-15!52;UBERON:0006241!1.54e-15!52;UBERON:0007135!1.54e-15!52;UBERON:0000955!9.28e-15!50;UBERON:0006238!9.28e-15!50;UBERON:0002616!1.84e-14!49;UBERON:0003056!4.97e-13!49;UBERON:0002020!3.22e-12!34;UBERON:0003080!4.91e-12!40;UBERON:0002780!1.85e-11!39;UBERON:0001890!1.85e-11!39;UBERON:0006240!1.85e-11!39;UBERON:0002791!5.70e-10!29;UBERON:0003528!5.70e-10!29;UBERON:0001893!5.70e-10!29;UBERON:0000956!3.43e-07!21;UBERON:0001869!3.43e-07!21;UBERON:0000203!3.43e-07!21;UBERON:0002021!4.95e-07!10;UBERON:0000411!4.95e-07!10;UBERON:0001950!4.95e-07!10;UBERON:0002619!8.16e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.43e-20,75;UBERON:0004121,7.63e-20,95;UBERON:0000924,7.63e-20,95;UBERON:0006601,7.63e-20,95;UBERON:0010314,1.26e-19,92;UBERON:0001017,1.79e-19,73;UBERON:0002346,1.46e-17,64;UBERON:0003075,1.46e-17,64;UBERON:0007284,1.46e-17,64;UBERON:0000073,7.77e-17,54;UBERON:0010371,1.27e-15,73;UBERON:0001049,1.54e-15,52;UBERON:0005068,1.54e-15,52;UBERON:0006241,1.54e-15,52;UBERON:0007135,1.54e-15,52;UBERON:0003056,4.97e-13,49;UBERON:0000955,6.97e-13,47;UBERON:0006238,6.97e-13,47;UBERON:0002616,1.36e-12,46;UBERON:0002020,3.22e-12,34;UBERON:0003080,4.90e-12,40;UBERON:0002780,1.85e-11,39;UBERON:0001890,1.85e-11,39;UBERON:0006240,1.85e-11,39;UBERON:0003528,5.70e-10,29;UBERON:0002791,5.70e-10,29;UBERON:0001893,5.70e-10,29;UBERON:0000956,3.43e-07,21;UBERON:0001869,3.43e-07,21;UBERON:0000203,3.43e-07,21;UBERON:0002021,4.95e-07,10;UBERON:0000411,4.95e-07,10;UBERON:0001950,4.95e-07,10;UBERON:0002619,8.16e-07,17 | |||
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| |||
|short_description=p3@Dync1h1 | |||
}} |
Revision as of 22:17, 12 September 2013
Short description: | p3@Dync1h1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dync1h1_5end |
Coexpression cluster: | NA |
Association with transcript: | 35bp_to_ENSMUST00000018851_5end |
EntrezGene: | Dync1h1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.37e-13 | 39 |
electrically active cell | 1.37e-13 | 39 |
neuron | 1.34e-10 | 33 |
neuronal stem cell | 1.34e-10 | 33 |
neuroblast | 1.34e-10 | 33 |
electrically signaling cell | 1.34e-10 | 33 |
ectodermal cell | 2.43e-08 | 44 |
neurectodermal cell | 2.43e-08 | 44 |
neural cell | 2.52e-08 | 43 |
CNS neuron (sensu Vertebrata) | 3.09e-08 | 23 |
neuroblast (sensu Vertebrata) | 3.09e-08 | 23 |
embryonic cell | 5.42e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.43e-20 | 75 |
ectoderm-derived structure | 7.63e-20 | 95 |
ectoderm | 7.63e-20 | 95 |
presumptive ectoderm | 7.63e-20 | 95 |
structure with developmental contribution from neural crest | 1.26e-19 | 92 |
central nervous system | 1.79e-19 | 73 |
neurectoderm | 1.46e-17 | 64 |
neural plate | 1.46e-17 | 64 |
presumptive neural plate | 1.46e-17 | 64 |
regional part of nervous system | 7.77e-17 | 54 |
ecto-epithelium | 1.27e-15 | 73 |
neural tube | 1.54e-15 | 52 |
neural rod | 1.54e-15 | 52 |
future spinal cord | 1.54e-15 | 52 |
neural keel | 1.54e-15 | 52 |
pre-chordal neural plate | 4.97e-13 | 49 |
brain | 6.97e-13 | 47 |
future brain | 6.97e-13 | 47 |
regional part of brain | 1.36e-12 | 46 |
gray matter | 3.22e-12 | 34 |
anterior neural tube | 4.90e-12 | 40 |
regional part of forebrain | 1.85e-11 | 39 |
forebrain | 1.85e-11 | 39 |
future forebrain | 1.85e-11 | 39 |
brain grey matter | 5.70e-10 | 29 |
regional part of telencephalon | 5.70e-10 | 29 |
telencephalon | 5.70e-10 | 29 |
cerebral cortex | 3.43e-07 | 21 |
cerebral hemisphere | 3.43e-07 | 21 |
pallium | 3.43e-07 | 21 |
occipital lobe | 4.95e-07 | 10 |
visual cortex | 4.95e-07 | 10 |
neocortex | 4.95e-07 | 10 |
regional part of cerebral cortex | 8.16e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.