FFCP PHASE1:Mm9::chr14:24823709..24823752,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16531|HGNC=|MCL_coexpression_id=1|UniProt=Q08460,C3VLD3|association_with_transcript=-282bp_to_NM_001253358,NM_001253359,NM_001253360,NM_001253361,NM_001253362,NM_001253363,NM_001253364,NM_001253365,NM_001253366,NM_001253367,NM_001253368,NM_001253369,NM_001253370,NM_001253371,NM_001253372,NM_001253373,NM_001253374,NM_001253375,NM_001253376,NM_001253377,NM_001253378,NM_010610,uc007sme.2,uc007smg.1,uc007smh.1,uc007smi.1,uc011zgw.1,uc011zgx.1,uc011zgy.1,uc011zgz.1,uc011zha.1,uc011zhc.1,uc011zhd.1,uc011zhe.1,uc011zhf.1,uc011zhg.1,uc011zhh.1,uc011zhi.1,uc011zhj.1,uc011zhk.1_5end|description=CAGE_peak_5_at_Kcnma1_5end|id=chr14:24823709..24823752,-|ontology_enrichment_celltype=CL:0000117!8.60e-10!23;CL:0000337!8.60e-10!23;CL:0000540!6.06e-09!33;CL:0000047!6.06e-09!33;CL:0000031!6.06e-09!33;CL:0000404!6.06e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.88e-12,23;CL:0000337,2.88e-12,23;CL:0000540,3.02e-07,33;CL:0000047,3.02e-07,33;CL:0000031,3.02e-07,33;CL:0000404,3.02e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.46e-19!71;UBERON:0003075!2.46e-19!71;UBERON:0007284!2.46e-19!71;UBERON:0001017!1.37e-16!73;UBERON:0005743!1.37e-16!73;UBERON:0004121!2.99e-16!102;UBERON:0000924!2.99e-16!102;UBERON:0006601!2.99e-16!102;UBERON:0000073!8.43e-16!75;UBERON:0001016!8.43e-16!75;UBERON:0001049!9.46e-16!52;UBERON:0005068!9.46e-16!52;UBERON:0006241!9.46e-16!52;UBERON:0007135!9.46e-16!52;UBERON:0000033!1.13e-15!63;UBERON:0002020!4.12e-15!34;UBERON:0000955!1.31e-14!50;UBERON:0006238!1.31e-14!50;UBERON:0002616!5.82e-14!49;UBERON:0003056!8.73e-13!49;UBERON:0002791!7.12e-12!29;UBERON:0003528!7.12e-12!29;UBERON:0001893!7.12e-12!29;UBERON:0003080!1.62e-11!40;UBERON:0002780!6.00e-11!39;UBERON:0001890!6.00e-11!39;UBERON:0006240!6.00e-11!39;UBERON:0002021!9.45e-09!10;UBERON:0000411!9.45e-09!10;UBERON:0001950!9.45e-09!10;UBERON:0000956!1.46e-07!21;UBERON:0001869!1.46e-07!21;UBERON:0000203!1.46e-07!21;UBERON:0000153!3.32e-07!94;UBERON:0002619!4.36e-07!17;UBERON:0007811!6.81e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.70e-31,54;UBERON:0001049,8.96e-29,52;UBERON:0005068,8.96e-29,52;UBERON:0006241,8.96e-29,52;UBERON:0007135,8.96e-29,52;UBERON:0002346,8.18e-27,64;UBERON:0003075,8.18e-27,64;UBERON:0007284,8.18e-27,64;UBERON:0001017,4.43e-26,73;UBERON:0001016,4.75e-25,75;UBERON:0002020,6.06e-25,34;UBERON:0000955,6.46e-23,47;UBERON:0006238,6.46e-23,47;UBERON:0010371,4.85e-22,73;UBERON:0002616,1.09e-21,46;UBERON:0004121,2.15e-21,95;UBERON:0000924,2.15e-21,95;UBERON:0006601,2.15e-21,95;UBERON:0003056,3.20e-19,49;UBERON:0003080,3.70e-19,40;UBERON:0003528,1.02e-18,29;UBERON:0002791,1.02e-18,29;UBERON:0001893,1.02e-18,29;UBERON:0010314,3.33e-18,92;UBERON:0002780,4.61e-18,39;UBERON:0001890,4.61e-18,39;UBERON:0006240,4.61e-18,39;UBERON:0002021,6.66e-16,10;UBERON:0000411,6.66e-16,10;UBERON:0001950,6.66e-16,10;UBERON:0002619,1.13e-11,17;UBERON:0000956,1.45e-10,21;UBERON:0001869,1.45e-10,21;UBERON:0000203,1.45e-10,21;UBERON:0003076,2.78e-10,12;UBERON:0003057,2.78e-10,12;UBERON:0002420,3.57e-10,8;UBERON:0007245,3.57e-10,8;UBERON:0010009,3.57e-10,8;UBERON:0010011,3.57e-10,8;UBERON:0000454,3.57e-10,8;UBERON:0002240,6.74e-09,6;UBERON:0005174,6.74e-09,6;UBERON:0001137,6.74e-09,6;UBERON:0001948,6.61e-08,5;UBERON:0002315,6.61e-08,5;UBERON:0000025,1.77e-07,114;UBERON:0004111,6.63e-07,122;UBERON:0000369,9.45e-07,5;UBERON:0002435,9.45e-07,5;UBERON:0000204,9.45e-07,5;UBERON:0010082,9.45e-07,5|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,1.53077922271926,0,0,0,0,0,0,0.215471232685889,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22548106945558,0.528990979272033,1.26766280701236,0,0,0,0,0,0,0,0.414758449233911,0.270011876663381,0.210324961351382,3.14216082844184,3.97563373712904,0.979926393719632,0.766763768145891,0,7.70811166995721,3.83062014255563,2.91852413186863,1.58263545276233,2.01272815925301,1.04182674111352,1.67509799400829,5.06486349028512,3.20876320331301,7.66034322231536,6.69146899755784,2.98239113320481,0,0.0755715601067855,0.869593466105033,0,0,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,1.92974780784272,0.693941307064543,0.304465478312141,0.230615497256059,0.301445281105245,1.29347577849275,1.25666591329675,0,0.433798070759735,0,1.61766849947409,0.441683036920787,0.484875253135222,0,1.17112318804619,2.09446706813455,0,0,0,0,3.59497534571574,6.40500843946077,4.90051973240171,8.69121600961382,9.71718737855256,2.70124457927428,4.54275536589721,0.712875546952214,0.373220911830279,0.252722758433675,1.47309299120532,0.390361328888111,0,0.180062129805349,0.60281927134286,1.42876648217788,0.512454881139399,1.12442069471675,1.03481348295606,0,0.189106080167819,0.175951124163949,0.43839146485515,0.834141747676794,1.74126083261083,0.823128545631774,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0.196764231747404,0,0,0,0.116765342367169,0,0.164167464079095,0,0,0.219550115291051,0,5.46753866266731,1.54356918568927,0,0.264450566663544,0.213288250535234,0.696710015581316,0.257734922644187,0.605050573870028,0.22237804384487,0,0,0,0,0.198956472041151,0.58489226135736,0,0.432276099749388,0.199141273254367,0,0,0,0,0,0.350679099451593,0.189709611372772,0,0,0,0,0.166845105716094,0,0,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.37898282354097,0.162964976442026,0,0,0,0,0.390267295715598,0.157635144106191,0.221464689648775,0.318909537314974,0,0,0,0,0,0,0,2.40825884981688,2.34423373184406,0,1.00988370881749,0.315508219416257,0.390438744296638,0.646270193198397,0,0.222798674082394,0.849229592366497,0,0.584511715822624,0.395287777946524,6.42642632843614,0.851640511249612,0.35613120733451,0.81443479676788,0.164970122972535,0,0.242780636154981,0,0,0.295301892880773,0.307435147943927,0,0,0.712994756769443,0.316036757935816,0,0,1.36175842301515,0,0,0,0,0.178368817602071,0.987294123612726,1.2178597964584,0,0,0.661585194164886,0,0.807322133479528,0,0,0.164140899745061,0.291480836629851,1.8542530201051,0,0,0.185194527369712,0.188368457004691,0,0,0,0,0,0.954670618015114,0,0.813277868507395,0.540026704109006,0.418176592028937,0.655087691238533,0.944050424693745,0.743881101528023,0.26175594198403,0.259229946583586,0,0,0.149516546043979,0.330916980914195,1.55560950675238,0.904118764344118,0.506868376472335,1.29092962510329,0.5208175393758,0.734015410979976,0.241584120826006,0.288030006257865,0,0,0,0,0,0.198681354781265,0,0,0,0,0.100826185136841,0.194915761479505,0.192423683280659,0,0.453460767230423,0,0,0,1.15913756419314,0.187682475451182,0,0.214368379079066,0,6.21227026878773,15.651058041244,9.73922372846974,12.3734291287455,11.6464028361009,6.0431511791176,12.1504050041725,8.10578165803597,7.25027854374727,6.21312374102184,0,0.399024873401031,0.512200817262403,0.486213434136588,0.419226325255965,0.183843508450014,1.11123363900808,0.206035057238894,0.320919209591815,0.505394423527595,1.2673964994512,0.754505365544305,0.842773567228942,0.768301828858431,0.746661096422973,0,1.62238056322798,0.192909220463705,1.23625770240992,0.735994600671987,1.02860775715625,0.70990322463735,2.38436189947321,0.290692833264657,0.658765662907314,0.25384382367503,0.914639864363863,0.263069711437843,0.543216455383447,1.68342681497322,1.18635018124174,0.788035859004508,0.818462086339379,0.929621047115796,0.771626443924566,1.24905288968973,1.63752125911786,2.57845264857958,1.91288332068843,0.882365676478062,0.231867835620421|short_description=p5@Kcnma1}} | ||
|EntrezGene=16531 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q08460,C3VLD3 | |||
|association_with_transcript=-282bp_to_NM_001253358,NM_001253359,NM_001253360,NM_001253361,NM_001253362,NM_001253363,NM_001253364,NM_001253365,NM_001253366,NM_001253367,NM_001253368,NM_001253369,NM_001253370,NM_001253371,NM_001253372,NM_001253373,NM_001253374,NM_001253375,NM_001253376,NM_001253377,NM_001253378,NM_010610,uc007sme.2,uc007smg.1,uc007smh.1,uc007smi.1,uc011zgw.1,uc011zgx.1,uc011zgy.1,uc011zgz.1,uc011zha.1,uc011zhc.1,uc011zhd.1,uc011zhe.1,uc011zhf.1,uc011zhg.1,uc011zhh.1,uc011zhi.1,uc011zhj.1,uc011zhk.1_5end | |||
|description=CAGE_peak_5_at_Kcnma1_5end | |||
|id=chr14:24823709..24823752,- | |||
|ontology_enrichment_celltype=CL:0000117!8.60e-10!23;CL:0000337!8.60e-10!23;CL:0000540!6.06e-09!33;CL:0000047!6.06e-09!33;CL:0000031!6.06e-09!33;CL:0000404!6.06e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.88e-12,23;CL:0000337,2.88e-12,23;CL:0000540,3.02e-07,33;CL:0000047,3.02e-07,33;CL:0000031,3.02e-07,33;CL:0000404,3.02e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.46e-19!71;UBERON:0003075!2.46e-19!71;UBERON:0007284!2.46e-19!71;UBERON:0001017!1.37e-16!73;UBERON:0005743!1.37e-16!73;UBERON:0004121!2.99e-16!102;UBERON:0000924!2.99e-16!102;UBERON:0006601!2.99e-16!102;UBERON:0000073!8.43e-16!75;UBERON:0001016!8.43e-16!75;UBERON:0001049!9.46e-16!52;UBERON:0005068!9.46e-16!52;UBERON:0006241!9.46e-16!52;UBERON:0007135!9.46e-16!52;UBERON:0000033!1.13e-15!63;UBERON:0002020!4.12e-15!34;UBERON:0000955!1.31e-14!50;UBERON:0006238!1.31e-14!50;UBERON:0002616!5.82e-14!49;UBERON:0003056!8.73e-13!49;UBERON:0002791!7.12e-12!29;UBERON:0003528!7.12e-12!29;UBERON:0001893!7.12e-12!29;UBERON:0003080!1.62e-11!40;UBERON:0002780!6.00e-11!39;UBERON:0001890!6.00e-11!39;UBERON:0006240!6.00e-11!39;UBERON:0002021!9.45e-09!10;UBERON:0000411!9.45e-09!10;UBERON:0001950!9.45e-09!10;UBERON:0000956!1.46e-07!21;UBERON:0001869!1.46e-07!21;UBERON:0000203!1.46e-07!21;UBERON:0000153!3.32e-07!94;UBERON:0002619!4.36e-07!17;UBERON:0007811!6.81e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.70e-31,54;UBERON:0001049,8.96e-29,52;UBERON:0005068,8.96e-29,52;UBERON:0006241,8.96e-29,52;UBERON:0007135,8.96e-29,52;UBERON:0002346,8.18e-27,64;UBERON:0003075,8.18e-27,64;UBERON:0007284,8.18e-27,64;UBERON:0001017,4.43e-26,73;UBERON:0001016,4.75e-25,75;UBERON:0002020,6.06e-25,34;UBERON:0000955,6.46e-23,47;UBERON:0006238,6.46e-23,47;UBERON:0010371,4.85e-22,73;UBERON:0002616,1.09e-21,46;UBERON:0004121,2.15e-21,95;UBERON:0000924,2.15e-21,95;UBERON:0006601,2.15e-21,95;UBERON:0003056,3.20e-19,49;UBERON:0003080,3.70e-19,40;UBERON:0003528,1.02e-18,29;UBERON:0002791,1.02e-18,29;UBERON:0001893,1.02e-18,29;UBERON:0010314,3.33e-18,92;UBERON:0002780,4.61e-18,39;UBERON:0001890,4.61e-18,39;UBERON:0006240,4.61e-18,39;UBERON:0002021,6.66e-16,10;UBERON:0000411,6.66e-16,10;UBERON:0001950,6.66e-16,10;UBERON:0002619,1.13e-11,17;UBERON:0000956,1.45e-10,21;UBERON:0001869,1.45e-10,21;UBERON:0000203,1.45e-10,21;UBERON:0003076,2.78e-10,12;UBERON:0003057,2.78e-10,12;UBERON:0002420,3.57e-10,8;UBERON:0007245,3.57e-10,8;UBERON:0010009,3.57e-10,8;UBERON:0010011,3.57e-10,8;UBERON:0000454,3.57e-10,8;UBERON:0002240,6.74e-09,6;UBERON:0005174,6.74e-09,6;UBERON:0001137,6.74e-09,6;UBERON:0001948,6.61e-08,5;UBERON:0002315,6.61e-08,5;UBERON:0000025,1.77e-07,114;UBERON:0004111,6.63e-07,122;UBERON:0000369,9.45e-07,5;UBERON:0002435,9.45e-07,5;UBERON:0000204,9.45e-07,5;UBERON:0010082,9.45e-07,5 | |||
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|short_description=p5@Kcnma1 | |||
}} |
Revision as of 01:49, 13 September 2013
Short description: | p5@Kcnma1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Kcnma1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -282bp_to_NM_001253358, NM_001253359, NM_001253360, NM_001253361, NM_001253362, NM_001253363, NM_001253364, NM_001253365, NM_001253366, NM_001253367, NM_001253368, NM_001253369, NM_001253370, NM_001253371, NM_001253372, NM_001253373, NM_001253374, NM_001253375, NM_00125337 |
EntrezGene: | Kcnma1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.88e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.88e-12 | 23 |
neuron | 3.02e-07 | 33 |
neuronal stem cell | 3.02e-07 | 33 |
neuroblast | 3.02e-07 | 33 |
electrically signaling cell | 3.02e-07 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.