FFCP PHASE1:Hg19::chr4:77659857..77659874,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57619|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=30422|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc003hkg.2_5end|coexpression_cluster_id=C1324|description=CAGE_peak_3_at_SHROOM3_5end|id=chr4:77659857..77659874,+|ontology_enrichment_celltype=CL:0000057!3.06e-24!75;CL:0000055!1.38e-20!180;CL:0002620!8.10e-16!23;CL:0002334!1.48e-08!12;CL:0000192!2.11e-07!42;CL:0000514!2.11e-07!42|ontology_enrichment_celltype_v019=CL:0002620;1.16e-17;23!CL:0000057;4.69e-10;73!CL:0002559;3.00e-08;5!CL:0002334;1.38e-07;12|ontology_enrichment_celltype_v019_2=CL:0000057,1.30e-21,76;CL:0002620,1.37e-17,23;CL:0002559,3.06e-08,5;CL:0002334,1.12e-07,12;CL:0000136,4.95e-07,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!5.27e-07!14|ontology_enrichment_disease_v019=DOID:17;4.22e-09;5!DOID:450;4.22e-09;5!DOID:66;4.22e-09;5!DOID:423;4.22e-09;5!DOID:0080000;4.22e-09;5!DOID:11722;4.22e-09;5|ontology_enrichment_disease_v019_2=DOID:17,4.21e-09,5;DOID:450,4.21e-09,5;DOID:66,4.21e-09,5;DOID:423,4.21e-09,5;DOID:0080000,4.21e-09,5;DOID:11722,4.21e-09,5|ontology_enrichment_uberon=UBERON:0002199!1.36e-12!45;UBERON:0002416!1.36e-12!45;UBERON:0002097!3.35e-12!40;UBERON:0003102!5.30e-12!95;UBERON:0000914!5.57e-10!83;UBERON:0002329!5.57e-10!83;UBERON:0003077!5.57e-10!83;UBERON:0003059!5.57e-10!83;UBERON:0007282!5.57e-10!83;UBERON:0009618!5.57e-10!83;UBERON:0007285!5.57e-10!83;UBERON:0004290!3.91e-09!70;UBERON:0002100!8.57e-08!216;UBERON:0000486!2.62e-07!82;UBERON:0004923!3.81e-07!57;UBERON:0004457!5.82e-07!12;UBERON:0000042!5.82e-07!12;UBERON:0000475!9.60e-07!365|ontology_enrichment_uberon_v019=UBERON:0002097;1.16e-13;41!UBERON:0002199;8.90e-11;46!UBERON:0002416;8.90e-11;46!UBERON:0004457;1.13e-09;9!UBERON:0000042;1.13e-09;9!UBERON:0003688;2.50e-09;6!UBERON:0002358;2.50e-09;6!UBERON:0003684;2.50e-09;6!UBERON:0001178;2.50e-09;6!UBERON:0003102;4.11e-09;50!UBERON:0002073;3.00e-08;5!UBERON:0000160;3.09e-08;17!UBERON:0002384;3.60e-07;198!UBERON:0001155;6.15e-07;9!UBERON:0000059;6.53e-07;11!UBERON:0005409;6.76e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.84e-17,41;UBERON:0002199,6.15e-16,46;UBERON:0002416,6.15e-16,46;UBERON:0004457,1.98e-10,12;UBERON:0000042,1.98e-10,12;UBERON:0003102,1.37e-09,99;UBERON:0003688,2.34e-09,6;UBERON:0002358,2.34e-09,6;UBERON:0003684,2.34e-09,6;UBERON:0001178,2.34e-09,6;UBERON:0000160,2.73e-08,17;UBERON:0002073,3.06e-08,5;UBERON:0005086,3.06e-08,5;UBERON:0005409,6.40e-08,25;UBERON:0000059,4.84e-07,11;UBERON:0001155,5.20e-07,9|phase1_expression=3.81524596468169,5.1384125733836,7.47058341708647,5.00366491765652,4.46961094427288,4.36169262050184,12.6649939084155,0,0,0.245733936501509,0,0,0.263766978228454,0,0,0.672325146451775,1.20538905604795,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0.722878304769133,4.01070328508712,2.17269778441236,0,0.486634870302636,0,0,0,1.57174890597255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9152146474689,0.12663051166458,2.51577443545116,0.286836620748814,0,1.12135520028461,1.06748995729705,0.24666754841716,0,0.134710672069688,0.163461903113459,0,0,0,0.936480230490962,1.1409436430889,4.33401173600223,0.117434498643765,0.323745888736263,0.561803226808994,2.04154171254893,0,0.619954687054593,3.56400857184616,4.94533858557114,0.910161361938026,0,0.336672227908132,0.250237039743928,0.831192346452549,6.14568669233173,20.2281945227353,3.00476117813194,0.226864366320042,75.5230366250109,13.4541154955697,20.3454625113179,45.0136644126603,20.9196634354031,86.0519403752401,29.964813869386,71.0548358735731,47.7441325289873,90.6237249536371,32.1254146261625,2.42469085228218,121.413280640682,50.980561703186,38.8293756391017,0,0,0,0,0,0,0,0,0,7.8224766164908,7.71889125831462,8.28809528114883,6.03678306441573,7.21879481669586,0,0,0.241011029883482,0,0,0.237270619111097,0,0,0,0,7.01208869017229,2.4694440679884,2.94017422771084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571481048629521,0,0,0,0.308482478109971,0,0,0,0,0,0.904902010304444,0,0,22.0728636765443,6.24044621468197,0,0,0,2.43062589218851,0,0,0.65147236858747,1.42156779497018,0,0.301439377059586,3.48613383440118,3.09916272664377,0,0,0,0.718874566474748,0,0,0.289562613335158,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,6.44709670745502,4.28229573113188,1.41932173530541,0.585707074963566,0,0,0,0,4.60922921354258,17.2898392791485,0.195801157462741,0.343143423810856,0,0,0,0,0,0.30239029332968,22.8259183193275,83.0229275488418,44.3442949204256,3.84417447767103,31.2141421930689,9.97294311090366,11.8734453155993,0.462629081407967,0.710246901252508,0.98552587216571,0,1.85936605535935,0,0,0,0.34444334449382,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57619 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=30422 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc003hkg.2_5end | |||
|coexpression_cluster_id=C1324 | |||
|description=CAGE_peak_3_at_SHROOM3_5end | |||
|id=chr4:77659857..77659874,+ | |||
|ontology_enrichment_celltype=CL:0000057!3.06e-24!75;CL:0000055!1.38e-20!180;CL:0002620!8.10e-16!23;CL:0002334!1.48e-08!12;CL:0000192!2.11e-07!42;CL:0000514!2.11e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.16e-17;23!CL:0000057;4.69e-10;73!CL:0002559;3.00e-08;5!CL:0002334;1.38e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.30e-21,76;CL:0002620,1.37e-17,23;CL:0002559,3.06e-08,5;CL:0002334,1.12e-07,12;CL:0000136,4.95e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!5.27e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:17;4.22e-09;5!DOID:450;4.22e-09;5!DOID:66;4.22e-09;5!DOID:423;4.22e-09;5!DOID:0080000;4.22e-09;5!DOID:11722;4.22e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.21e-09,5;DOID:450,4.21e-09,5;DOID:66,4.21e-09,5;DOID:423,4.21e-09,5;DOID:0080000,4.21e-09,5;DOID:11722,4.21e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!1.36e-12!45;UBERON:0002416!1.36e-12!45;UBERON:0002097!3.35e-12!40;UBERON:0003102!5.30e-12!95;UBERON:0000914!5.57e-10!83;UBERON:0002329!5.57e-10!83;UBERON:0003077!5.57e-10!83;UBERON:0003059!5.57e-10!83;UBERON:0007282!5.57e-10!83;UBERON:0009618!5.57e-10!83;UBERON:0007285!5.57e-10!83;UBERON:0004290!3.91e-09!70;UBERON:0002100!8.57e-08!216;UBERON:0000486!2.62e-07!82;UBERON:0004923!3.81e-07!57;UBERON:0004457!5.82e-07!12;UBERON:0000042!5.82e-07!12;UBERON:0000475!9.60e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.16e-13;41!UBERON:0002199;8.90e-11;46!UBERON:0002416;8.90e-11;46!UBERON:0004457;1.13e-09;9!UBERON:0000042;1.13e-09;9!UBERON:0003688;2.50e-09;6!UBERON:0002358;2.50e-09;6!UBERON:0003684;2.50e-09;6!UBERON:0001178;2.50e-09;6!UBERON:0003102;4.11e-09;50!UBERON:0002073;3.00e-08;5!UBERON:0000160;3.09e-08;17!UBERON:0002384;3.60e-07;198!UBERON:0001155;6.15e-07;9!UBERON:0000059;6.53e-07;11!UBERON:0005409;6.76e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.84e-17,41;UBERON:0002199,6.15e-16,46;UBERON:0002416,6.15e-16,46;UBERON:0004457,1.98e-10,12;UBERON:0000042,1.98e-10,12;UBERON:0003102,1.37e-09,99;UBERON:0003688,2.34e-09,6;UBERON:0002358,2.34e-09,6;UBERON:0003684,2.34e-09,6;UBERON:0001178,2.34e-09,6;UBERON:0000160,2.73e-08,17;UBERON:0002073,3.06e-08,5;UBERON:0005086,3.06e-08,5;UBERON:0005409,6.40e-08,25;UBERON:0000059,4.84e-07,11;UBERON:0001155,5.20e-07,9 | |||
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| |||
|short_description=p3@SHROOM3 | |||
}} |
Revision as of 11:48, 13 September 2013
Short description: | p3@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SHROOM3_5end |
Coexpression cluster: | C1324_Fibroblast_Preadipocyte_basal_migratory_mesenchymal_Smooth_spindle |
Association with transcript: | 0bp_to_uc003hkg.2_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.30e-21 | 76 |
skin fibroblast | 1.37e-17 | 23 |
hair follicle cell | 3.06e-08 | 5 |
preadipocyte | 1.12e-07 | 12 |
fat cell | 4.95e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.84e-17 | 41 |
integument | 6.15e-16 | 46 |
integumental system | 6.15e-16 | 46 |
cavity lining | 1.98e-10 | 12 |
serous membrane | 1.98e-10 | 12 |
surface structure | 1.37e-09 | 99 |
omentum | 2.34e-09 | 6 |
peritoneum | 2.34e-09 | 6 |
abdominal cavity | 2.34e-09 | 6 |
visceral peritoneum | 2.34e-09 | 6 |
intestine | 2.73e-08 | 17 |
hair follicle | 3.06e-08 | 5 |
hair follicle placode | 3.06e-08 | 5 |
gastrointestinal system | 6.40e-08 | 25 |
large intestine | 4.84e-07 | 11 |
colon | 5.20e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.21e-09 | 5 |
myotonic disease | 4.21e-09 | 5 |
muscle tissue disease | 4.21e-09 | 5 |
myopathy | 4.21e-09 | 5 |
muscular disease | 4.21e-09 | 5 |
myotonic dystrophy | 4.21e-09 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.