FFCP PHASE1:Mm9::chr19:56005954..56005970,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=64|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:56005954..56005970,+|id=chr19:56005954..56005970,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002613,3.93e-19,3;CL:0000117,4.07e-09,23;CL:0000337,4.07e-09,23;CL:0000120,9.29e-09,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000369,1.03e-11,5;UBERON:0002435,1.03e-11,5;UBERON:0000204,1.03e-11,5;UBERON:0010082,1.03e-11,5;UBERON:0002420,1.65e-07,8;UBERON:0007245,1.65e-07,8;UBERON:0010009,1.65e-07,8;UBERON:0010011,1.65e-07,8;UBERON:0000454,1.65e-07,8;UBERON:0001044,4.83e-07,1;UBERON:0001736,4.83e-07,1;UBERON:0003293,4.83e-07,1;UBERON:0003294,4.83e-07,1;UBERON:0001829,4.83e-07,1;UBERON:0010047,4.83e-07,1;UBERON:0000167,4.83e-07,1;UBERON:0006298,4.83e-07,1;UBERON:0002259,7.23e-07,1;UBERON:0002314,7.23e-07,1;UBERON:0004061,7.23e-07,1;UBERON:0006777,7.23e-07,1;UBERON:0005882,7.23e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47997726838022,0,0,0,0,0,0,0,0,0,15.8481681015439,0,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0,0.183546752161682,0,0.436050312760893,0,0,0.419959264876088,1.43752564364972,0,0,0,0,0.286533439938757,0,0.404632921719196,1.5869729378161,1.26766280701236,0,0,0,0,0.7104801149461,0,0,0.103689612308478,0,0,0,0,0.122490799214954,0,0,0,1.65993539510744,0.614426133024974,2.90149833006426,5.12330804173494,3.64639359389732,0,0,0.30559649555362,0,0,0,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0.173485326766136,0,0.230615497256059,0,0.587943535678524,0.125666591329675,0.247194967734374,0,0,0.161766849947409,0,0,0,0,0,0.510914110417183,0,0,0,1.04853447583376,0,0,0,0,1.87009240103604,0.973447578406546,0.203678727700633,0,0,0,0.390361328888111,0,0,0,0.136072998302656,0.384341160854549,0.0937017245597288,0,0.215567992932842,0.189106080167819,0.351902248327898,0,0,0.696504333044333,0.205782136407943,0.59710280045548,0,0,0,0.414251545071004,0.234526059981096,0.180062061461015,0,0.590292695242212,0.154267112887378,0.232533944750408,0,0.233530684734339,0,0,0.162137619091711,0,0,0.268412837520744,0.210289948564127,0,0.330418782983798,0.264450566663544,0,0.232236671860439,0.128867461322093,0,0.444756087689741,0,0.949058123089023,0,0.251335208800269,0.397912944082302,0.19496408711912,0,0.432276099749388,0,0.189667900953082,0,0,0.814605311381257,0.193952487167626,0.280543279561274,0.316182685621286,0.295220295959204,0,0,0,1.00107063429656,0.393117990226406,1.12431056192427,0.608580364165509,0.482354319504834,0,0,0.648540907100142,1.09824565275233,4.31304619582064,0,0.312037673114561,0.252578877947112,0.358794827043824,0,0.554259570499814,0.189491411770485,0.162964976442026,0.169745085775188,0,0,0.476087281772027,0,0.315270288212382,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0.275936746304732,0,0,0.163934945376675,0.252470927204373,0.315508219416257,0,0,0,0.222798674082394,0,0,0,0,0,0,0,0.325773918707152,0.329940245945071,0,0.242780636154981,0.302323556964751,0,0,0,0,0.363533729477506,0,0,0,0,0,0.36012218806262,0.258717367565509,0.428674070063185,0,0.356737635204141,0.329098041204242,0,0,0,0,0,0.645857706783622,0.180938774784468,0.477489376012546,0.492422699235184,0,0,0.341741761595705,0,0,0,0,0,0,0,0.138199973804424,0.954670618015114,0,0,0.324016022465404,0.209088296014469,0.218362563746178,0.269728692769641,0.0826534557253359,0,0.648074866458964,1.24267862617385,0,0.299033092087958,0,0,0,0.337912250981556,0.352071715937262,0.13020438484395,0,0,0,0,0,0.308132871494482,0.25984164595559,0,0.39736270956253,0.120195449519969,0.147689527174577,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0.501572104035363,0.564751842617067,0,0,0,0,0,0,0.45032120322422,0,0,0.207574695168353,0,0.341467211508268,0,0.838452650511929,0.735374033800057,0,0.412070114477788,0.320919209591815,0.252697211763798,0.25347929989024,0,0.468207537349412,0.256100609619477,0.114870937911227,0,0,0.192909220463705,0,0.147198920134397,0.342869252385415,0.70990322463735,0.476872379894642,0.145346416632329,0,0.25384382367503,0.182927972872773,0.263069711437843,0.679020569229309,0,0.830445126869219,0.0985044823755635,0,0.309873682371932,0.385813221962283,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0|short_description=p@chr19:56005954..56005970,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=64 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:56005954..56005970,+ | |||
|id=chr19:56005954..56005970,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,3.93e-19,3;CL:0000117,4.07e-09,23;CL:0000337,4.07e-09,23;CL:0000120,9.29e-09,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,1.03e-11,5;UBERON:0002435,1.03e-11,5;UBERON:0000204,1.03e-11,5;UBERON:0010082,1.03e-11,5;UBERON:0002420,1.65e-07,8;UBERON:0007245,1.65e-07,8;UBERON:0010009,1.65e-07,8;UBERON:0010011,1.65e-07,8;UBERON:0000454,1.65e-07,8;UBERON:0001044,4.83e-07,1;UBERON:0001736,4.83e-07,1;UBERON:0003293,4.83e-07,1;UBERON:0003294,4.83e-07,1;UBERON:0001829,4.83e-07,1;UBERON:0010047,4.83e-07,1;UBERON:0000167,4.83e-07,1;UBERON:0006298,4.83e-07,1;UBERON:0002259,7.23e-07,1;UBERON:0002314,7.23e-07,1;UBERON:0004061,7.23e-07,1;UBERON:0006777,7.23e-07,1;UBERON:0005882,7.23e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47997726838022,0,0,0,0,0,0,0,0,0,15.8481681015439,0,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0,0.183546752161682,0,0.436050312760893,0,0,0.419959264876088,1.43752564364972,0,0,0,0,0.286533439938757,0,0.404632921719196,1.5869729378161,1.26766280701236,0,0,0,0,0.7104801149461,0,0,0.103689612308478,0,0,0,0,0.122490799214954,0,0,0,1.65993539510744,0.614426133024974,2.90149833006426,5.12330804173494,3.64639359389732,0,0,0.30559649555362,0,0,0,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0.173485326766136,0,0.230615497256059,0,0.587943535678524,0.125666591329675,0.247194967734374,0,0,0.161766849947409,0,0,0,0,0,0.510914110417183,0,0,0,1.04853447583376,0,0,0,0,1.87009240103604,0.973447578406546,0.203678727700633,0,0,0,0.390361328888111,0,0,0,0.136072998302656,0.384341160854549,0.0937017245597288,0,0.215567992932842,0.189106080167819,0.351902248327898,0,0,0.696504333044333,0.205782136407943,0.59710280045548,0,0,0,0.414251545071004,0.234526059981096,0.180062061461015,0,0.590292695242212,0.154267112887378,0.232533944750408,0,0.233530684734339,0,0,0.162137619091711,0,0,0.268412837520744,0.210289948564127,0,0.330418782983798,0.264450566663544,0,0.232236671860439,0.128867461322093,0,0.444756087689741,0,0.949058123089023,0,0.251335208800269,0.397912944082302,0.19496408711912,0,0.432276099749388,0,0.189667900953082,0,0,0.814605311381257,0.193952487167626,0.280543279561274,0.316182685621286,0.295220295959204,0,0,0,1.00107063429656,0.393117990226406,1.12431056192427,0.608580364165509,0.482354319504834,0,0,0.648540907100142,1.09824565275233,4.31304619582064,0,0.312037673114561,0.252578877947112,0.358794827043824,0,0.554259570499814,0.189491411770485,0.162964976442026,0.169745085775188,0,0,0.476087281772027,0,0.315270288212382,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0.275936746304732,0,0,0.163934945376675,0.252470927204373,0.315508219416257,0,0,0,0.222798674082394,0,0,0,0,0,0,0,0.325773918707152,0.329940245945071,0,0.242780636154981,0.302323556964751,0,0,0,0,0.363533729477506,0,0,0,0,0,0.36012218806262,0.258717367565509,0.428674070063185,0,0.356737635204141,0.329098041204242,0,0,0,0,0,0.645857706783622,0.180938774784468,0.477489376012546,0.492422699235184,0,0,0.341741761595705,0,0,0,0,0,0,0,0.138199973804424,0.954670618015114,0,0,0.324016022465404,0.209088296014469,0.218362563746178,0.269728692769641,0.0826534557253359,0,0.648074866458964,1.24267862617385,0,0.299033092087958,0,0,0,0.337912250981556,0.352071715937262,0.13020438484395,0,0,0,0,0,0.308132871494482,0.25984164595559,0,0.39736270956253,0.120195449519969,0.147689527174577,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0.501572104035363,0.564751842617067,0,0,0,0,0,0,0.45032120322422,0,0,0.207574695168353,0,0.341467211508268,0,0.838452650511929,0.735374033800057,0,0.412070114477788,0.320919209591815,0.252697211763798,0.25347929989024,0,0.468207537349412,0.256100609619477,0.114870937911227,0,0,0.192909220463705,0,0.147198920134397,0.342869252385415,0.70990322463735,0.476872379894642,0.145346416632329,0,0.25384382367503,0.182927972872773,0.263069711437843,0.679020569229309,0,0.830445126869219,0.0985044823755635,0,0.309873682371932,0.385813221962283,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0 | |||
|short_description=p@chr19:56005954..56005970,+ | |||
}} |
Revision as of 18:08, 13 September 2013
Short description: | p@chr19:56005954..56005970, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:56005954..56005970, + |
Coexpression cluster: | MCL_coexpression_mm9:64 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 3.93e-19 | 3 |
CNS neuron (sensu Vertebrata) | 4.07e-09 | 23 |
neuroblast (sensu Vertebrata) | 4.07e-09 | 23 |
granule cell | 9.29e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 1.03e-11 | 5 |
striatum | 1.03e-11 | 5 |
ventral part of telencephalon | 1.03e-11 | 5 |
future corpus striatum | 1.03e-11 | 5 |
basal ganglion | 1.65e-07 | 8 |
nuclear complex of neuraxis | 1.65e-07 | 8 |
aggregate regional part of brain | 1.65e-07 | 8 |
collection of basal ganglia | 1.65e-07 | 8 |
cerebral subcortex | 1.65e-07 | 8 |
saliva-secreting gland | 4.83e-07 | 1 |
submandibular gland | 4.83e-07 | 1 |
gland of oral region | 4.83e-07 | 1 |
gland of foregut | 4.83e-07 | 1 |
major salivary gland | 4.83e-07 | 1 |
oral gland | 4.83e-07 | 1 |
oral cavity | 4.83e-07 | 1 |
submandibular gland primordium | 4.83e-07 | 1 |
corpora quadrigemina | 7.23e-07 | 1 |
midbrain tectum | 7.23e-07 | 1 |
neural tube mantle layer | 7.23e-07 | 1 |
tectal plate | 7.23e-07 | 1 |
neural tube alar plate | 7.23e-07 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.