FFCP PHASE1:Mm9::chr1:167766612..167766636,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:167766612..167766636,-|id=chr1:167766612..167766636,-|ontology_enrichment_celltype=CL:0000473!1.58e-10!3;CL:0000627!1.58e-10!3;CL:0000682!1.58e-10!3;CL:0000239!3.95e-09!6;CL:0000677!3.95e-09!6;CL:0000212!3.95e-09!6;CL:0000584!3.95e-09!6;CL:0000075!8.05e-08!7|ontology_enrichment_celltype_v019_2=CL:0000682,2.74e-29,3;CL:0000239,2.66e-26,6;CL:0000677,2.66e-26,6;CL:0000584,2.66e-26,6;CL:0000075,1.27e-22,7;CL:0000066,8.14e-19,25;CL:0002563,1.04e-17,9;CL:0002251,1.04e-17,9;CL:0000473,5.45e-13,7;CL:0002076,8.56e-11,15;CL:0000223,3.51e-08,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002465!1.83e-10!3;UBERON:0000344!4.58e-10!15;UBERON:0004923!2.25e-09!24;UBERON:0005409!1.44e-08!59;UBERON:0001962!7.99e-08!2;UBERON:0001961!7.99e-08!2;UBERON:0001744!7.99e-08!2|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.57e-23,15;UBERON:0001962,6.43e-21,2;UBERON:0001961,6.43e-21,2;UBERON:0001744,6.43e-21,2;UBERON:0003350,1.04e-17,9;UBERON:0004808,1.04e-17,9;UBERON:0001277,1.04e-17,9;UBERON:0004923,9.75e-15,24;UBERON:0000485,1.43e-14,11;UBERON:0002465,2.70e-14,3;UBERON:0001242,2.15e-12,13;UBERON:0001262,2.15e-12,13;UBERON:0004786,2.15e-12,13;UBERON:0003199,3.65e-11,1|phase1_expression=0,15.0059425284925,12.2849794635175,0,0,9.73699777088961,10.5125688267987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.2789922315231,11.9292826154928,10.3361753540704,10.7690499039769,10.1271479362368,0,0,0.665191531965914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175951124163949,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377210159511796,0.295301892880773,0,0,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0.170870880797853,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0,0,0,0,0,0,0,0,0,0.194451188344048,0,0,0.117357238645754,0.39061315453185,0.209718688851422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:167766612..167766636,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:167766612..167766636,- | |||
|id=chr1:167766612..167766636,- | |||
|ontology_enrichment_celltype=CL:0000473!1.58e-10!3;CL:0000627!1.58e-10!3;CL:0000682!1.58e-10!3;CL:0000239!3.95e-09!6;CL:0000677!3.95e-09!6;CL:0000212!3.95e-09!6;CL:0000584!3.95e-09!6;CL:0000075!8.05e-08!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,2.74e-29,3;CL:0000239,2.66e-26,6;CL:0000677,2.66e-26,6;CL:0000584,2.66e-26,6;CL:0000075,1.27e-22,7;CL:0000066,8.14e-19,25;CL:0002563,1.04e-17,9;CL:0002251,1.04e-17,9;CL:0000473,5.45e-13,7;CL:0002076,8.56e-11,15;CL:0000223,3.51e-08,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002465!1.83e-10!3;UBERON:0000344!4.58e-10!15;UBERON:0004923!2.25e-09!24;UBERON:0005409!1.44e-08!59;UBERON:0001962!7.99e-08!2;UBERON:0001961!7.99e-08!2;UBERON:0001744!7.99e-08!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.57e-23,15;UBERON:0001962,6.43e-21,2;UBERON:0001961,6.43e-21,2;UBERON:0001744,6.43e-21,2;UBERON:0003350,1.04e-17,9;UBERON:0004808,1.04e-17,9;UBERON:0001277,1.04e-17,9;UBERON:0004923,9.75e-15,24;UBERON:0000485,1.43e-14,11;UBERON:0002465,2.70e-14,3;UBERON:0001242,2.15e-12,13;UBERON:0001262,2.15e-12,13;UBERON:0004786,2.15e-12,13;UBERON:0003199,3.65e-11,1 | |||
|phase1_expression=0,15.0059425284925,12.2849794635175,0,0,9.73699777088961,10.5125688267987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.2789922315231,11.9292826154928,10.3361753540704,10.7690499039769,10.1271479362368,0,0,0.665191531965914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175951124163949,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377210159511796,0.295301892880773,0,0,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0.170870880797853,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0,0,0,0,0,0,0,0,0,0.194451188344048,0,0,0.117357238645754,0.39061315453185,0.209718688851422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:167766612..167766636,- | |||
}} |
Revision as of 19:33, 13 September 2013
Short description: | p@chr1:167766612..167766636, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:167766612..167766636, - |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 2.74e-29 | 3 |
brush border epithelial cell | 2.66e-26 | 6 |
gut absorptive cell | 2.66e-26 | 6 |
enterocyte | 2.66e-26 | 6 |
columnar/cuboidal epithelial cell | 1.27e-22 | 7 |
epithelial cell | 8.14e-19 | 25 |
intestinal epithelial cell | 1.04e-17 | 9 |
epithelial cell of alimentary canal | 1.04e-17 | 9 |
defensive cell | 5.45e-13 | 7 |
endo-epithelial cell | 8.56e-11 | 15 |
endodermal cell | 3.51e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.57e-23 | 15 |
gut-associated lymphoid tissue | 6.43e-21 | 2 |
mucosa-associated lymphoid tissue | 6.43e-21 | 2 |
lymphoid tissue | 6.43e-21 | 2 |
epithelium of mucosa | 1.04e-17 | 9 |
gastrointestinal system epithelium | 1.04e-17 | 9 |
intestinal epithelium | 1.04e-17 | 9 |
organ component layer | 9.75e-15 | 24 |
simple columnar epithelium | 1.43e-14 | 11 |
lymphoid system | 2.70e-14 | 3 |
intestinal mucosa | 2.15e-12 | 13 |
wall of intestine | 2.15e-12 | 13 |
gastrointestinal system mucosa | 2.15e-12 | 13 |
egg chamber | 3.65e-11 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.