FFCP PHASE1:Mm9::chr4:148960529..148960536,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=65945|HGNC=|MCL_coexpression_id=1|UniProt=Q9EPL2|association_with_transcript=-40bp_to_ENSMUST00000105691_5end|description=CAGE_peak_3_at_Clstn1_5end|id=chr4:148960529..148960536,+|ontology_enrichment_celltype=CL:0000221!1.06e-11!44;CL:0000133!1.06e-11!44;CL:0002319!1.19e-11!43;CL:0000055!7.15e-10!50;CL:0000117!1.22e-09!23;CL:0000337!1.22e-09!23;CL:0000540!1.67e-08!33;CL:0000047!1.67e-08!33;CL:0000031!1.67e-08!33;CL:0000404!1.67e-08!33;CL:0002321!9.69e-08!70;CL:0000220!9.69e-08!70;CL:0000393!1.63e-07!39;CL:0000211!1.63e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.01e-16,23;CL:0000337,4.01e-16,23;CL:0002319,4.47e-15,43;CL:0000221,1.61e-14,44;CL:0000133,1.61e-14,44;CL:0002321,2.07e-11,70;CL:0000540,2.82e-10,33;CL:0000047,2.82e-10,33;CL:0000031,2.82e-10,33;CL:0000404,2.82e-10,33;CL:0000393,2.86e-09,39;CL:0000211,2.86e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.88e-24!75;UBERON:0001016!1.88e-24!75;UBERON:0001017!3.27e-24!73;UBERON:0005743!3.27e-24!73;UBERON:0004121!9.67e-23!102;UBERON:0000924!9.67e-23!102;UBERON:0006601!9.67e-23!102;UBERON:0000033!5.16e-20!63;UBERON:0001049!7.04e-20!52;UBERON:0005068!7.04e-20!52;UBERON:0006241!7.04e-20!52;UBERON:0007135!7.04e-20!52;UBERON:0000955!2.72e-19!50;UBERON:0006238!2.72e-19!50;UBERON:0002616!9.26e-19!49;UBERON:0002346!1.16e-16!71;UBERON:0003075!1.16e-16!71;UBERON:0007284!1.16e-16!71;UBERON:0002020!1.63e-16!34;UBERON:0002791!4.93e-14!29;UBERON:0003528!4.93e-14!29;UBERON:0001893!4.93e-14!29;UBERON:0003056!1.53e-13!49;UBERON:0003080!2.53e-13!40;UBERON:0002780!1.03e-12!39;UBERON:0001890!1.03e-12!39;UBERON:0006240!1.03e-12!39;UBERON:0000956!8.43e-11!21;UBERON:0001869!8.43e-11!21;UBERON:0000203!8.43e-11!21;UBERON:0007811!2.96e-10!86;UBERON:0000153!1.19e-09!94;UBERON:0002619!4.80e-09!17;UBERON:0002021!1.00e-07!10;UBERON:0000411!1.00e-07!10;UBERON:0001950!1.00e-07!10;UBERON:0003076!1.49e-07!12;UBERON:0003057!1.49e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.58e-34,75;UBERON:0001017,6.80e-34,73;UBERON:0000073,1.03e-33,54;UBERON:0001049,4.51e-31,52;UBERON:0005068,4.51e-31,52;UBERON:0006241,4.51e-31,52;UBERON:0007135,4.51e-31,52;UBERON:0004121,3.42e-30,95;UBERON:0000924,3.42e-30,95;UBERON:0006601,3.42e-30,95;UBERON:0002020,2.14e-28,34;UBERON:0002346,1.03e-27,64;UBERON:0003075,1.03e-27,64;UBERON:0007284,1.03e-27,64;UBERON:0000955,2.32e-26,47;UBERON:0006238,2.32e-26,47;UBERON:0002616,1.84e-25,46;UBERON:0003528,5.78e-24,29;UBERON:0002791,5.78e-24,29;UBERON:0001893,5.78e-24,29;UBERON:0010371,1.28e-23,73;UBERON:0003080,1.02e-19,40;UBERON:0000956,5.63e-19,21;UBERON:0001869,5.63e-19,21;UBERON:0000203,5.63e-19,21;UBERON:0003056,7.52e-19,49;UBERON:0002780,1.11e-18,39;UBERON:0001890,1.11e-18,39;UBERON:0006240,1.11e-18,39;UBERON:0002619,7.40e-16,17;UBERON:0010314,9.70e-15,92;UBERON:0002021,1.62e-12,10;UBERON:0000411,1.62e-12,10;UBERON:0001950,1.62e-12,10;UBERON:0003076,3.27e-12,12;UBERON:0003057,3.27e-12,12;UBERON:0011216,2.57e-10,194;UBERON:0000025,1.21e-09,114;UBERON:0004111,2.25e-09,122;UBERON:0004733,3.90e-07,6;UBERON:0004732,3.90e-07,6;UBERON:0002028,3.90e-07,6;UBERON:0007277,3.90e-07,6|phase1_expression=0.640595388419176,1.74487703819681,0,1.81478526784098,2.50447864973174,0.839396359559449,0.700837921786577,0.129123323441576,0,0,0,0,0.171200729931206,0.0874204024189974,0,0.202475267389826,0,0,0,0,0.680346321208558,0.0992909512008853,0,1.27993938234725,0,1.14846392823004,0.430761996159075,1.07735616342945,0.760093677825496,0.756090389279792,0,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,0,0,0,0,0,0,1.00717454380462,1.01376931219515,0.550640256485045,3.9119567217402,2.18025156380447,3.51497892375155,2.13872888981712,0.279972843250725,1.43752564364972,0,0,0.336093799142464,0.514518872071894,0,0,1.61853168687678,2.64495489636016,1.26766280701236,1.35537812827653,0.889294796111139,0,0.988866362566974,0,2.39680088414724,3.07374644257244,1.24427534770173,1.35005938331691,1.89292465216244,2.28520787523043,2.20868540951614,1.46988959057945,1.0543001812006,0,6.60695285996332,5.74593021383345,6.14426133024974,1.71452174049252,1.00636407962651,0.52091337055676,4.74611098302348,3.37657566019008,3.0559649555362,1.76777151284201,2.42031857358475,2.05039390407831,1.21161909333094,0.453429360640713,0.869593466105033,0,0,0,0,0,0.280888840263504,0.852151612890289,1.55871602761721,0.70667914902068,0.704217098883403,1.28326477414318,0,0,1.08245520505607,1.01343946190039,0,0.91347103775248,0.258937883647172,0.148442139064825,0.173485326766136,0,0.691846491768175,0.452167921657868,0.352766121407114,0.125666591329675,0,0.289198713839823,0,0.161766849947409,0.662524555381181,0,0,1.75668478206928,2.30391377494801,1.02182822083437,0,0,0,5.09288173976397,4.11750542536764,2.01046963380583,5.21472960576829,5.62574006126727,3.94797284663164,3.73154905055843,0.203678727700633,0.248813941220186,0.758168275301024,1.47309299120532,0.780722657776222,0,0.540186389416048,0.150704817835715,1.02054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| ||
|EntrezGene=65945 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q9EPL2 | |||
|association_with_transcript=-40bp_to_ENSMUST00000105691_5end | |||
|description=CAGE_peak_3_at_Clstn1_5end | |||
|id=chr4:148960529..148960536,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.06e-11!44;CL:0000133!1.06e-11!44;CL:0002319!1.19e-11!43;CL:0000055!7.15e-10!50;CL:0000117!1.22e-09!23;CL:0000337!1.22e-09!23;CL:0000540!1.67e-08!33;CL:0000047!1.67e-08!33;CL:0000031!1.67e-08!33;CL:0000404!1.67e-08!33;CL:0002321!9.69e-08!70;CL:0000220!9.69e-08!70;CL:0000393!1.63e-07!39;CL:0000211!1.63e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.01e-16,23;CL:0000337,4.01e-16,23;CL:0002319,4.47e-15,43;CL:0000221,1.61e-14,44;CL:0000133,1.61e-14,44;CL:0002321,2.07e-11,70;CL:0000540,2.82e-10,33;CL:0000047,2.82e-10,33;CL:0000031,2.82e-10,33;CL:0000404,2.82e-10,33;CL:0000393,2.86e-09,39;CL:0000211,2.86e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.88e-24!75;UBERON:0001016!1.88e-24!75;UBERON:0001017!3.27e-24!73;UBERON:0005743!3.27e-24!73;UBERON:0004121!9.67e-23!102;UBERON:0000924!9.67e-23!102;UBERON:0006601!9.67e-23!102;UBERON:0000033!5.16e-20!63;UBERON:0001049!7.04e-20!52;UBERON:0005068!7.04e-20!52;UBERON:0006241!7.04e-20!52;UBERON:0007135!7.04e-20!52;UBERON:0000955!2.72e-19!50;UBERON:0006238!2.72e-19!50;UBERON:0002616!9.26e-19!49;UBERON:0002346!1.16e-16!71;UBERON:0003075!1.16e-16!71;UBERON:0007284!1.16e-16!71;UBERON:0002020!1.63e-16!34;UBERON:0002791!4.93e-14!29;UBERON:0003528!4.93e-14!29;UBERON:0001893!4.93e-14!29;UBERON:0003056!1.53e-13!49;UBERON:0003080!2.53e-13!40;UBERON:0002780!1.03e-12!39;UBERON:0001890!1.03e-12!39;UBERON:0006240!1.03e-12!39;UBERON:0000956!8.43e-11!21;UBERON:0001869!8.43e-11!21;UBERON:0000203!8.43e-11!21;UBERON:0007811!2.96e-10!86;UBERON:0000153!1.19e-09!94;UBERON:0002619!4.80e-09!17;UBERON:0002021!1.00e-07!10;UBERON:0000411!1.00e-07!10;UBERON:0001950!1.00e-07!10;UBERON:0003076!1.49e-07!12;UBERON:0003057!1.49e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.58e-34,75;UBERON:0001017,6.80e-34,73;UBERON:0000073,1.03e-33,54;UBERON:0001049,4.51e-31,52;UBERON:0005068,4.51e-31,52;UBERON:0006241,4.51e-31,52;UBERON:0007135,4.51e-31,52;UBERON:0004121,3.42e-30,95;UBERON:0000924,3.42e-30,95;UBERON:0006601,3.42e-30,95;UBERON:0002020,2.14e-28,34;UBERON:0002346,1.03e-27,64;UBERON:0003075,1.03e-27,64;UBERON:0007284,1.03e-27,64;UBERON:0000955,2.32e-26,47;UBERON:0006238,2.32e-26,47;UBERON:0002616,1.84e-25,46;UBERON:0003528,5.78e-24,29;UBERON:0002791,5.78e-24,29;UBERON:0001893,5.78e-24,29;UBERON:0010371,1.28e-23,73;UBERON:0003080,1.02e-19,40;UBERON:0000956,5.63e-19,21;UBERON:0001869,5.63e-19,21;UBERON:0000203,5.63e-19,21;UBERON:0003056,7.52e-19,49;UBERON:0002780,1.11e-18,39;UBERON:0001890,1.11e-18,39;UBERON:0006240,1.11e-18,39;UBERON:0002619,7.40e-16,17;UBERON:0010314,9.70e-15,92;UBERON:0002021,1.62e-12,10;UBERON:0000411,1.62e-12,10;UBERON:0001950,1.62e-12,10;UBERON:0003076,3.27e-12,12;UBERON:0003057,3.27e-12,12;UBERON:0011216,2.57e-10,194;UBERON:0000025,1.21e-09,114;UBERON:0004111,2.25e-09,122;UBERON:0004733,3.90e-07,6;UBERON:0004732,3.90e-07,6;UBERON:0002028,3.90e-07,6;UBERON:0007277,3.90e-07,6 | |||
|phase1_expression=0.640595388419176,1.74487703819681,0,1.81478526784098,2.50447864973174,0.839396359559449,0.700837921786577,0.129123323441576,0,0,0,0,0.171200729931206,0.0874204024189974,0,0.202475267389826,0,0,0,0,0.680346321208558,0.0992909512008853,0,1.27993938234725,0,1.14846392823004,0.430761996159075,1.07735616342945,0.760093677825496,0.756090389279792,0,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,0,0,0,0,0,0,1.00717454380462,1.01376931219515,0.550640256485045,3.9119567217402,2.18025156380447,3.51497892375155,2.13872888981712,0.279972843250725,1.43752564364972,0,0,0.336093799142464,0.514518872071894,0,0,1.61853168687678,2.64495489636016,1.26766280701236,1.35537812827653,0.889294796111139,0,0.988866362566974,0,2.39680088414724,3.07374644257244,1.24427534770173,1.35005938331691,1.89292465216244,2.28520787523043,2.20868540951614,1.46988959057945,1.0543001812006,0,6.60695285996332,5.74593021383345,6.14426133024974,1.71452174049252,1.00636407962651,0.52091337055676,4.74611098302348,3.37657566019008,3.0559649555362,1.76777151284201,2.42031857358475,2.05039390407831,1.21161909333094,0.453429360640713,0.869593466105033,0,0,0,0,0,0.280888840263504,0.852151612890289,1.55871602761721,0.70667914902068,0.704217098883403,1.28326477414318,0,0,1.08245520505607,1.01343946190039,0,0.91347103775248,0.258937883647172,0.148442139064825,0.173485326766136,0,0.691846491768175,0.452167921657868,0.352766121407114,0.125666591329675,0,0.289198713839823,0,0.161766849947409,0.662524555381181,0,0,1.75668478206928,2.30391377494801,1.02182822083437,0,0,0,5.09288173976397,4.11750542536764,2.01046963380583,5.21472960576829,5.62574006126727,3.94797284663164,3.73154905055843,0.203678727700633,0.248813941220186,0.758168275301024,1.47309299120532,0.780722657776222,0,0.540186389416048,0.150704817835715,1.02054748726992,0.896796041993948,1.3118241438362,1.55222022443409,0,0,0.879755620819744,1.09597866213787,0.278047249225598,1.0447564995665,0.411564272815887,0.199034266818493,0,0,0,0.207125772535502,0,0.36012412292203,0,0.590292695242212,0,0,0,0.233530684734339,0.16455984991348,0,0.243206428637567,0.146199987425332,0.439100230582101,0.805238512562231,3.36463917702604,2.6755199218614,0.660837565967596,0.793351699990633,0,0,0.128867461322093,0.605050573870028,0.444756087689741,0.951128130562796,0.949058123089023,0.823494773620054,1.00534083520108,1.59165177632921,0.38992817423824,1.79763881730844,0.864552199498777,1.1948476395262,0.379335801906163,0.342745537829186,0,0.203651327845314,0,0.350679099451593,0.505892296994058,0.147610147979602,0.156998727841375,0.246794327843601,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0.372140947668503,0.312037673114561,0.252578877947112,0,0.482443521363367,0.369506380333209,0,0,0,0,0.502518772325447,0.476087281772027,0.195133647857799,0.788175720530955,0.8858587585951,0.797273843287435,1.14704320301017,1.20879487306127,0.867894351489069,0,0,0.491764273019036,1.37968373152366,5.45872005958493,5.15731421005694,0.491804836130026,0.252470927204373,0.315508219416257,0.390438744296638,0.646270193198397,0.477937595905104,0.222798674082394,0.283076530788832,0.809621403349789,0.876767573733936,1.18586333383957,2.24924921495265,0.141940085208269,0.178065603667255,0.325773918707152,1.15479086080775,2.65490276679926,0.485561272309963,0.906970670894253,0.188605079755898,0.295301892880773,0.614870295887855,0.258428293168221,0.727067458955011,0.356497378384721,0.632073515871632,1.05418608574999,3.09406629744561,0.340439605753788,0.18006109403131,0.517434735131018,0.428674070063185,0.354680467284547,0.713475270408282,0.493647061806363,0.304464949114599,0.469343416127421,0.21183207086382,1.10264199027481,0.65954501176592,0.645857706783622,0.422190474497091,0.954978752025092,0.328281799490123,0.874442509889552,4.63563255026274,0,0.82554747185289,0,0,0,0.228778173206523,0.169978429993855,0,0,0,0,0.406638934253697,0.324016022465404,0.209088296014469,0.87345025498471,0.539457385539283,0.826534557253359,0.785267825952089,0.777689839750757,2.4853572523477,0,0,0.165458490457098,0.194451188344048,0.645799117388655,0.506868376472335,0.704143431874524,0.2604087696879,0.524296722128554,0.241584120826006,0,0.316011120628178,0.608175645870493,0.821687657318618,0.51968329191118,0.358053391334963,0,0,0,0.302899349844443,0.0762068066549998,0.201652370273681,0,0.192423683280659,0,0.680191150845634,0,0.269141569828427,0.335769232728157,0.965947970160952,0.187682475451182,0.36630324853453,0.857473516316263,0,5.0827665835536,1.84130094602871,2.86447756719698,6.01486138202907,5.48066015816514,5.2877572817279,7.42524750254986,6.30449684513909,4.07828168085784,6.21312374102184,0.103787347584177,1.19707462020309,0.170733605754134,0.243106717068294,0,0.367687016900028,0.888986911206461,0.618105171716683,0,0.505394423527595,0.25347929989024,0,0.468207537349412,0.320125762024346,0.516919220600519,0.952587382566147,0.811190281613988,0.964546102318525,0.824171801606613,0.735994600671987,0.685738504770831,0.177475806159338,0,0.436039249896986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| |||
|short_description=p3@Clstn1 | |||
}} |
Revision as of 04:28, 14 September 2013
Short description: | p3@Clstn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Clstn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -40bp_to_ENSMUST00000105691_5end |
EntrezGene: | Clstn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.01e-16 | 23 |
neuroblast (sensu Vertebrata) | 4.01e-16 | 23 |
neural cell | 4.47e-15 | 43 |
ectodermal cell | 1.61e-14 | 44 |
neurectodermal cell | 1.61e-14 | 44 |
embryonic cell | 2.07e-11 | 70 |
neuron | 2.82e-10 | 33 |
neuronal stem cell | 2.82e-10 | 33 |
neuroblast | 2.82e-10 | 33 |
electrically signaling cell | 2.82e-10 | 33 |
electrically responsive cell | 2.86e-09 | 39 |
electrically active cell | 2.86e-09 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.