FFCP PHASE1:Mm9::chr4:62131902..62131956,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71354|HGNC=|MCL_coexpression_id=0|UniProt=Q9JHB4,B7ZCH6,B7ZCH5|association_with_transcript=0bp_to_ENSMUST00000030087,ENSMUST00000107452,ENSMUST00000120095,ENSMUST00000135811,ENSMUST00000155522,NM_023597,uc008tet.1,uc008teu.1,uc008tev.1_5end|description=CAGE_peak_1_at_Wdr31_5end|id=chr4:62131902..62131956,-|ontology_enrichment_celltype=CL:0000117!7.74e-07!23;CL:0000337!7.74e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,5.87e-07,23;CL:0000337,5.87e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.97e-17!71;UBERON:0003075!3.97e-17!71;UBERON:0007284!3.97e-17!71;UBERON:0003056!6.09e-17!49;UBERON:0000033!2.42e-15!63;UBERON:0001049!1.03e-14!52;UBERON:0005068!1.03e-14!52;UBERON:0006241!1.03e-14!52;UBERON:0007135!1.03e-14!52;UBERON:0001017!2.87e-14!73;UBERON:0005743!2.87e-14!73;UBERON:0003080!1.78e-13!40;UBERON:0004121!2.31e-13!102;UBERON:0000924!2.31e-13!102;UBERON:0006601!2.31e-13!102;UBERON:0002616!3.49e-13!49;UBERON:0002780!3.87e-13!39;UBERON:0001890!3.87e-13!39;UBERON:0006240!3.87e-13!39;UBERON:0000073!4.47e-13!75;UBERON:0001016!4.47e-13!75;UBERON:0000955!9.72e-13!50;UBERON:0006238!9.72e-13!50;UBERON:0002020!5.77e-10!34;UBERON:0002791!2.69e-08!29;UBERON:0003528!2.69e-08!29;UBERON:0001893!2.69e-08!29;UBERON:0007811!3.68e-08!86;UBERON:0000153!7.83e-08!94;UBERON:0000991!1.45e-07!18;UBERON:0005564!1.45e-07!18;UBERON:0004176!4.60e-07!17;UBERON:0009196!4.60e-07!17;UBERON:0009117!4.60e-07!17;UBERON:0000489!8.54e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0003056,2.73e-17,49;UBERON:0002346,2.88e-17,64;UBERON:0003075,2.88e-17,64;UBERON:0007284,2.88e-17,64;UBERON:0000073,2.66e-15,54;UBERON:0010371,3.66e-15,73;UBERON:0001049,5.21e-15,52;UBERON:0005068,5.21e-15,52;UBERON:0006241,5.21e-15,52;UBERON:0007135,5.21e-15,52;UBERON:0001017,1.96e-14,73;UBERON:0003080,9.56e-14,40;UBERON:0002780,2.12e-13,39;UBERON:0001890,2.12e-13,39;UBERON:0006240,2.12e-13,39;UBERON:0001016,3.88e-13,75;UBERON:0002616,5.97e-13,46;UBERON:0004121,7.21e-13,95;UBERON:0000924,7.21e-13,95;UBERON:0006601,7.21e-13,95;UBERON:0000955,1.73e-12,47;UBERON:0006238,1.73e-12,47;UBERON:0002020,3.72e-10,34;UBERON:0010314,3.95e-09,92;UBERON:0003528,1.89e-08,29;UBERON:0002791,1.89e-08,29;UBERON:0001893,1.89e-08,29;UBERON:0000991,1.06e-07,18;UBERON:0005564,1.06e-07,18;UBERON:0004176,3.45e-07,17;UBERON:0009196,3.45e-07,17;UBERON:0009117,3.45e-07,17;UBERON:0000489,6.49e-07,21|phase1_expression=5.76535849577258,0.348975407639361,0,0,0,1.84667199103079,2.10251376535973,0,0,0,0,0,0,0,0.999329285446988,1.61980213911861,1.39912375625629,0,0.137114433605739,0,35.9733117339025,0,0,0.47997726838022,0.91763712426868,1.72269589234506,1.29228598847722,1.50829862880122,1.33016393619462,1.26015064879965,3.10422714917427,2.54012269383853,1.23012957516914,15.8481681015439,4.33277429626912,4.65457007003779,6.53341940039581,0.418531630736908,0,0,0,0,0,0.503587271902309,0.202753862439029,0.734187008646726,1.56478268869608,3.2703773457067,2.41654801007919,2.52758868796568,2.51975558925653,4.31257693094915,0,0,0,0,0,0.515672092277442,4.65327859977075,4.7609188134483,6.97214543856797,0.338844532069132,0.889294796111139,0.449949858640699,0,0,3.29560121570245,3.84218305321555,1.14058573539325,2.16009501330705,2.10324961351382,3.42781181284564,3.97563373712904,3.1847607795888,3.06705507258356,2.75765635983006,3.30347642998166,3.19218345212969,2.91852413186863,6.06676923558892,6.95306091378313,9.37644067002168,3.90856198601933,5.6276261003168,5.34793867218835,6.18720029494702,5.69486723196412,3.54158947068071,0.302904773332736,0.529000920747499,2.02905142091174,0,0,0,0,0,4.91555470461132,0.852151612890289,0.259786004602869,1.06001872353102,3.94361575374705,1.28326477414318,0,0,3.24736561516821,2.28023878927589,1.51657333504435,3.9964357901671,0.258937883647172,2.22663208597237,2.4287945747259,2.74018930480927,2.30615497256059,2.71300752994721,2.4693628498498,2.51333182659351,0.741584903203122,0.289198713839823,0,0.161766849947409,0.662524555381181,0.484875253135222,0,2.63502717310392,1.8850203613211,1.02182822083437,1.31796636956512,2.39961092397363,1.39777249780371,4.34392854273986,6.8625090422794,8.92145900001337,3.47648640384553,6.64860189058859,3.1168206683934,3.73154905055843,5.09196819251581,2.11491850037158,3.0326731012041,3.15662783829711,4.42409506073193,4.59804208866946,2.88099407688559,3.46621081022145,5.71506592871154,5.63700369253339,5.99691037182265,14.4873887613849,3.88022387279116,3.21480336285293,2.81521798662318,2.41115305670332,1.39023624612799,1.74126083261083,1.02891068203972,5.7719937377363,0.702213187313235,2.05878325691772,0.852490498186778,0.621377317606506,0.938104239924385,0.720248245844059,2.60419209143731,1.57411385397923,1.23413690309903,1.16266972375204,1.3413670069981,1.16765342367169,0.822799249567402,0.820837320395476,0.243206428637567,0.584799949701329,0,0.671032093801859,4.6263788684108,4.21908910755066,0,1.05780226665418,5.97207101498655,4.18026009348789,3.09281907173024,1.81515172161008,1.77902435075896,1.33157938278791,1.42358718463353,1.31759163779209,2.01068167040216,1.98956472041151,1.75467678407208,1.79763881730844,1.72910439899755,0.597423819763102,4.74169752382704,4.45569199177942,2.25415471346161,5.49858585182348,4.65485969202302,5.19005067188357,7.01925562079256,4.72352473534727,4.86696056308262,7.40382983530803,0.296452627087149,1.16791574001266,0.982794975566015,0.224862112384854,1.01430060694251,0.964708639009667,0.25462585178142,1.43848068725405,0.972811360650212,0.274561413188081,0,0.744281895337007,0.624075346229121,0.505157755894224,0.358794827043824,0.482443521363367,5.17308932466493,3.7898282354097,2.93336957595647,3.05541154395339,3.98973422090454,5.02518772325447,5.2369600994923,3.90267295715598,2.67979744980525,1.32878813789265,1.91345722388985,3.27726629431476,1.72684981865896,2.4590339958857,0,0.54390568381871,0,0.275936746304732,2.40825884981688,1.64096361229084,1.96721934452011,0.252470927204373,1.57754109708128,0.390438744296638,1.93881057959519,1.67278158566786,1.33679204449436,1.69845918473299,1.61924280669958,0.584511715822624,1.18586333383957,1.28528526568723,3.26462195979018,5.69809931735217,4.72372182125371,5.77395430403874,0,4.37005145078967,4.53485335447127,2.45186603682668,0.590603785761546,1.53717573971964,3.10113951801865,4.36240475373007,2.85197902707777,1.26414703174326,1.05418608574999,2.06271086496374,5.44703369206061,7.38250485528372,7.24408629183425,6.85878512101095,7.80297028026004,5.88617098086833,8.55654907131029,9.43841342255258,0.938686832254841,0.21183207086382,2.42581237860458,0.65954501176592,1.45317984026315,1.62844897306021,2.50681922406587,1.96969079694074,1.1659233465194,3.33765543618917,0,1.44470807574256,0.925972636848558,0.565105371014073,0.683471138605126,0.228778173206523,2.37969801991397,2.79902904647316,1.93479963326193,0.954670618015114,4.27053591334533,1.62655573701479,3.34816556547584,2.29997125615916,1.74690050996942,1.75323650300267,1.65306911450672,0.785267825952089,2.07383957266869,0,230.550411921834,6.27969493384711,3.80554528051325,3.88902376688095,2.58319646955462,3.54807863530634,4.5769323071844,5.208175393758,5.34782656571125,43.7267258695071,116.07609252192,1.89606672376907,4.05450430580328,4.82741498674688,2.20865399062252,2.50637373934474,1.39076948346885,0.961563596159751,2.06765338044408,2.01932899896295,2.59103142626999,1.20991422164209,0.877120926657772,1.25075394132428,1.16876902181569,0.453460767230423,2.44184548711471,3.85769583420746,0.671538465456314,1.15913756419314,1.50145980360946,1.46521299413812,1.71494703263253,3.51100472824754,7.34177395402186,4.14292712856459,4.01026859407578,2.40594455281163,2.74033007908257,5.2877572817279,4.72515750162264,3.60256962579376,4.53142408984205,5.1776031175182,2.28332164685189,3.19219898720825,2.04880326904961,1.70174701947806,2.51535795153579,1.2869045591501,0.666740183404846,1.03017528619447,1.92551525755089,2.27427490587418,2.78827229879264,1.13175804831646,2.34103768674706,3.00918216302886,2.52716063404698,2.38146845641537,1.73826488917283,2.70072908649187,1.64834360321323,1.76638704161277,2.05721551431249,1.59728225543404,1.43061713968393,1.59881058295561,3.10560955370591,1.77690676572521,1.64635175585495,1.31534855718921,1.49384525230448,1.68342681497322,2.49133538060766,2.06859412988683,2.45538625901814,1.85924209423159,1.92906610981141,5.49583271463481,3.04111090979031,1.71896843238639,0.382576664137687,0.441182838239031,0.231867835620421|short_description=p1@Wdr31}} | ||
|EntrezGene=71354 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q9JHB4,B7ZCH6,B7ZCH5 | |||
|association_with_transcript=0bp_to_ENSMUST00000030087,ENSMUST00000107452,ENSMUST00000120095,ENSMUST00000135811,ENSMUST00000155522,NM_023597,uc008tet.1,uc008teu.1,uc008tev.1_5end | |||
|description=CAGE_peak_1_at_Wdr31_5end | |||
|id=chr4:62131902..62131956,- | |||
|ontology_enrichment_celltype=CL:0000117!7.74e-07!23;CL:0000337!7.74e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.87e-07,23;CL:0000337,5.87e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.97e-17!71;UBERON:0003075!3.97e-17!71;UBERON:0007284!3.97e-17!71;UBERON:0003056!6.09e-17!49;UBERON:0000033!2.42e-15!63;UBERON:0001049!1.03e-14!52;UBERON:0005068!1.03e-14!52;UBERON:0006241!1.03e-14!52;UBERON:0007135!1.03e-14!52;UBERON:0001017!2.87e-14!73;UBERON:0005743!2.87e-14!73;UBERON:0003080!1.78e-13!40;UBERON:0004121!2.31e-13!102;UBERON:0000924!2.31e-13!102;UBERON:0006601!2.31e-13!102;UBERON:0002616!3.49e-13!49;UBERON:0002780!3.87e-13!39;UBERON:0001890!3.87e-13!39;UBERON:0006240!3.87e-13!39;UBERON:0000073!4.47e-13!75;UBERON:0001016!4.47e-13!75;UBERON:0000955!9.72e-13!50;UBERON:0006238!9.72e-13!50;UBERON:0002020!5.77e-10!34;UBERON:0002791!2.69e-08!29;UBERON:0003528!2.69e-08!29;UBERON:0001893!2.69e-08!29;UBERON:0007811!3.68e-08!86;UBERON:0000153!7.83e-08!94;UBERON:0000991!1.45e-07!18;UBERON:0005564!1.45e-07!18;UBERON:0004176!4.60e-07!17;UBERON:0009196!4.60e-07!17;UBERON:0009117!4.60e-07!17;UBERON:0000489!8.54e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,2.73e-17,49;UBERON:0002346,2.88e-17,64;UBERON:0003075,2.88e-17,64;UBERON:0007284,2.88e-17,64;UBERON:0000073,2.66e-15,54;UBERON:0010371,3.66e-15,73;UBERON:0001049,5.21e-15,52;UBERON:0005068,5.21e-15,52;UBERON:0006241,5.21e-15,52;UBERON:0007135,5.21e-15,52;UBERON:0001017,1.96e-14,73;UBERON:0003080,9.56e-14,40;UBERON:0002780,2.12e-13,39;UBERON:0001890,2.12e-13,39;UBERON:0006240,2.12e-13,39;UBERON:0001016,3.88e-13,75;UBERON:0002616,5.97e-13,46;UBERON:0004121,7.21e-13,95;UBERON:0000924,7.21e-13,95;UBERON:0006601,7.21e-13,95;UBERON:0000955,1.73e-12,47;UBERON:0006238,1.73e-12,47;UBERON:0002020,3.72e-10,34;UBERON:0010314,3.95e-09,92;UBERON:0003528,1.89e-08,29;UBERON:0002791,1.89e-08,29;UBERON:0001893,1.89e-08,29;UBERON:0000991,1.06e-07,18;UBERON:0005564,1.06e-07,18;UBERON:0004176,3.45e-07,17;UBERON:0009196,3.45e-07,17;UBERON:0009117,3.45e-07,17;UBERON:0000489,6.49e-07,21 | |||
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| |||
|short_description=p1@Wdr31 | |||
}} |
Revision as of 05:20, 14 September 2013
Short description: | p1@Wdr31 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Wdr31_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000030087, ENSMUST00000107452, ENSMUST00000120095, ENSMUST00000135811, ENSMUST00000155522, NM_023597, uc008tet.1, uc008teu.1, uc008tev.1_5end |
EntrezGene: | Wdr31 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.87e-07 | 23 |
neuroblast (sensu Vertebrata) | 5.87e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 2.73e-17 | 49 |
neurectoderm | 2.88e-17 | 64 |
neural plate | 2.88e-17 | 64 |
presumptive neural plate | 2.88e-17 | 64 |
regional part of nervous system | 2.66e-15 | 54 |
ecto-epithelium | 3.66e-15 | 73 |
neural tube | 5.21e-15 | 52 |
neural rod | 5.21e-15 | 52 |
future spinal cord | 5.21e-15 | 52 |
neural keel | 5.21e-15 | 52 |
central nervous system | 1.96e-14 | 73 |
anterior neural tube | 9.56e-14 | 40 |
regional part of forebrain | 2.12e-13 | 39 |
forebrain | 2.12e-13 | 39 |
future forebrain | 2.12e-13 | 39 |
nervous system | 3.88e-13 | 75 |
regional part of brain | 5.97e-13 | 46 |
ectoderm-derived structure | 7.21e-13 | 95 |
ectoderm | 7.21e-13 | 95 |
presumptive ectoderm | 7.21e-13 | 95 |
brain | 1.73e-12 | 47 |
future brain | 1.73e-12 | 47 |
gray matter | 3.72e-10 | 34 |
structure with developmental contribution from neural crest | 3.95e-09 | 92 |
brain grey matter | 1.89e-08 | 29 |
regional part of telencephalon | 1.89e-08 | 29 |
telencephalon | 1.89e-08 | 29 |
gonad | 1.06e-07 | 18 |
gonad primordium | 1.06e-07 | 18 |
external genitalia | 3.45e-07 | 17 |
indifferent external genitalia | 3.45e-07 | 17 |
indifferent gonad | 3.45e-07 | 17 |
cavitated compound organ | 6.49e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.