FFCP PHASE1:Mm9::chr5:125583272..125583283,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=293|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:125583272..125583283,-|id=chr5:125583272..125583283,-|ontology_enrichment_celltype=CL:0000117!1.00e-08!23;CL:0000337!1.00e-08!23|ontology_enrichment_celltype_v019_2=CL:0002611,2.94e-15,2;CL:0000878,4.26e-14,2;CL:0000129,4.26e-14,2;CL:0002612,8.39e-10,3;CL:0002194,1.67e-07,4;CL:0000766,1.67e-07,4;CL:0000234,1.67e-07,4;CL:0000576,1.67e-07,4;CL:0000235,1.67e-07,4;CL:0000864,1.67e-07,4;CL:0002009,1.67e-07,4;CL:0000040,1.67e-07,4;CL:0000559,1.67e-07,4|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.50e-17!52;UBERON:0005068!1.50e-17!52;UBERON:0006241!1.50e-17!52;UBERON:0007135!1.50e-17!52;UBERON:0001017!2.14e-17!73;UBERON:0005743!2.14e-17!73;UBERON:0000073!9.89e-17!75;UBERON:0001016!9.89e-17!75;UBERON:0002346!1.46e-13!71;UBERON:0003075!1.46e-13!71;UBERON:0007284!1.46e-13!71;UBERON:0004121!2.31e-13!102;UBERON:0000924!2.31e-13!102;UBERON:0006601!2.31e-13!102;UBERON:0002616!2.50e-13!49;UBERON:0000955!5.93e-13!50;UBERON:0006238!5.93e-13!50;UBERON:0002020!3.70e-12!34;UBERON:0002298!1.42e-11!6;UBERON:0000033!1.91e-11!63;UBERON:0003076!9.50e-11!12;UBERON:0003057!9.50e-11!12;UBERON:0002240!1.48e-09!6;UBERON:0005174!1.48e-09!6;UBERON:0001137!1.48e-09!6;UBERON:0003080!2.66e-09!40;UBERON:0003056!4.73e-09!49;UBERON:0002780!2.02e-08!39;UBERON:0001890!2.02e-08!39;UBERON:0006240!2.02e-08!39;UBERON:0002950!5.24e-08!4;UBERON:0001891!5.24e-08!4;UBERON:0009616!5.24e-08!4;UBERON:0001948!1.09e-07!5;UBERON:0002315!1.09e-07!5;UBERON:0002791!1.37e-07!29;UBERON:0003528!1.37e-07!29;UBERON:0001893!1.37e-07!29;UBERON:0002021!2.93e-07!10;UBERON:0000411!2.93e-07!10;UBERON:0001950!2.93e-07!10;UBERON:0007811!6.77e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0002240,2.17e-28,6;UBERON:0005174,2.17e-28,6;UBERON:0001137,2.17e-28,6;UBERON:0001948,2.63e-22,5;UBERON:0002315,2.63e-22,5;UBERON:0003076,2.83e-20,12;UBERON:0003057,2.83e-20,12;UBERON:0002256,2.94e-15,2;UBERON:0001017,2.61e-12,73;UBERON:0001049,3.19e-12,52;UBERON:0005068,3.19e-12,52;UBERON:0006241,3.19e-12,52;UBERON:0007135,3.19e-12,52;UBERON:0001016,5.98e-12,75;UBERON:0002257,8.39e-10,3;UBERON:0002346,9.74e-10,64;UBERON:0003075,9.74e-10,64;UBERON:0007284,9.74e-10,64;UBERON:0000073,1.75e-09,54;UBERON:0002020,2.23e-09,34;UBERON:0004121,3.56e-09,95;UBERON:0000924,3.56e-09,95;UBERON:0006601,3.56e-09,95;UBERON:0010371,2.10e-08,73;UBERON:0000489,4.00e-08,21;UBERON:0001851,4.80e-08,1;UBERON:0005889,4.80e-08,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528990979272033,0,0,0,0,0,0,1.19840044207362,1.53687322128622,0,0,0,5.99867067247988,5.07997644188711,0,0,0,0,0.383062014255563,0.46081959976873,0,0.0914876436024097,0,0.558365998002762,0.56276261003168,0.30559649555362,2.65165726926301,1.13897344639282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628340120440365,0,0,0,0,0.149790639404823,0.457500602818626,0,0.347648640384553,1.79000820131231,0.62336413367868,5.19172041816825,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0.776110112217047,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,3.7507739709505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354680467284547,0,0,0,0,0,0.220528398054962,0,0.161464426695906,0,0,0,0,1.48340241608408,0,0,0,0,0.136694227721025,0,0,0,0.138199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51801474093653,0.460325236507177,2.29158205375759,1.20297227640581,0,0,0.675022500231806,0.45032120322422,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0.0985044823755635,0,0,0,0.249810577937946,0,0,0,0.441182838239031,0|short_description=p@chr5:125583272..125583283,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=293 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:125583272..125583283,- | |||
|id=chr5:125583272..125583283,- | |||
|ontology_enrichment_celltype=CL:0000117!1.00e-08!23;CL:0000337!1.00e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002611,2.94e-15,2;CL:0000878,4.26e-14,2;CL:0000129,4.26e-14,2;CL:0002612,8.39e-10,3;CL:0002194,1.67e-07,4;CL:0000766,1.67e-07,4;CL:0000234,1.67e-07,4;CL:0000576,1.67e-07,4;CL:0000235,1.67e-07,4;CL:0000864,1.67e-07,4;CL:0002009,1.67e-07,4;CL:0000040,1.67e-07,4;CL:0000559,1.67e-07,4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.50e-17!52;UBERON:0005068!1.50e-17!52;UBERON:0006241!1.50e-17!52;UBERON:0007135!1.50e-17!52;UBERON:0001017!2.14e-17!73;UBERON:0005743!2.14e-17!73;UBERON:0000073!9.89e-17!75;UBERON:0001016!9.89e-17!75;UBERON:0002346!1.46e-13!71;UBERON:0003075!1.46e-13!71;UBERON:0007284!1.46e-13!71;UBERON:0004121!2.31e-13!102;UBERON:0000924!2.31e-13!102;UBERON:0006601!2.31e-13!102;UBERON:0002616!2.50e-13!49;UBERON:0000955!5.93e-13!50;UBERON:0006238!5.93e-13!50;UBERON:0002020!3.70e-12!34;UBERON:0002298!1.42e-11!6;UBERON:0000033!1.91e-11!63;UBERON:0003076!9.50e-11!12;UBERON:0003057!9.50e-11!12;UBERON:0002240!1.48e-09!6;UBERON:0005174!1.48e-09!6;UBERON:0001137!1.48e-09!6;UBERON:0003080!2.66e-09!40;UBERON:0003056!4.73e-09!49;UBERON:0002780!2.02e-08!39;UBERON:0001890!2.02e-08!39;UBERON:0006240!2.02e-08!39;UBERON:0002950!5.24e-08!4;UBERON:0001891!5.24e-08!4;UBERON:0009616!5.24e-08!4;UBERON:0001948!1.09e-07!5;UBERON:0002315!1.09e-07!5;UBERON:0002791!1.37e-07!29;UBERON:0003528!1.37e-07!29;UBERON:0001893!1.37e-07!29;UBERON:0002021!2.93e-07!10;UBERON:0000411!2.93e-07!10;UBERON:0001950!2.93e-07!10;UBERON:0007811!6.77e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,2.17e-28,6;UBERON:0005174,2.17e-28,6;UBERON:0001137,2.17e-28,6;UBERON:0001948,2.63e-22,5;UBERON:0002315,2.63e-22,5;UBERON:0003076,2.83e-20,12;UBERON:0003057,2.83e-20,12;UBERON:0002256,2.94e-15,2;UBERON:0001017,2.61e-12,73;UBERON:0001049,3.19e-12,52;UBERON:0005068,3.19e-12,52;UBERON:0006241,3.19e-12,52;UBERON:0007135,3.19e-12,52;UBERON:0001016,5.98e-12,75;UBERON:0002257,8.39e-10,3;UBERON:0002346,9.74e-10,64;UBERON:0003075,9.74e-10,64;UBERON:0007284,9.74e-10,64;UBERON:0000073,1.75e-09,54;UBERON:0002020,2.23e-09,34;UBERON:0004121,3.56e-09,95;UBERON:0000924,3.56e-09,95;UBERON:0006601,3.56e-09,95;UBERON:0010371,2.10e-08,73;UBERON:0000489,4.00e-08,21;UBERON:0001851,4.80e-08,1;UBERON:0005889,4.80e-08,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528990979272033,0,0,0,0,0,0,1.19840044207362,1.53687322128622,0,0,0,5.99867067247988,5.07997644188711,0,0,0,0,0.383062014255563,0.46081959976873,0,0.0914876436024097,0,0.558365998002762,0.56276261003168,0.30559649555362,2.65165726926301,1.13897344639282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628340120440365,0,0,0,0,0.149790639404823,0.457500602818626,0,0.347648640384553,1.79000820131231,0.62336413367868,5.19172041816825,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0.776110112217047,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,3.7507739709505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354680467284547,0,0,0,0,0,0.220528398054962,0,0.161464426695906,0,0,0,0,1.48340241608408,0,0,0,0,0.136694227721025,0,0,0,0.138199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51801474093653,0.460325236507177,2.29158205375759,1.20297227640581,0,0,0.675022500231806,0.45032120322422,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0.0985044823755635,0,0,0,0.249810577937946,0,0,0,0.441182838239031,0 | |||
|short_description=p@chr5:125583272..125583283,- | |||
}} |
Revision as of 06:29, 14 September 2013
Short description: | p@chr5:125583272..125583283, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:125583272..125583283, - |
Coexpression cluster: | MCL_coexpression_mm9:293 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the dorsal spinal cord | 2.94e-15 | 2 |
central nervous system macrophage | 4.26e-14 | 2 |
microglial cell | 4.26e-14 | 2 |
neuron of the ventral spinal cord | 8.39e-10 | 3 |
monopoietic cell | 1.67e-07 | 4 |
myeloid leukocyte | 1.67e-07 | 4 |
phagocyte | 1.67e-07 | 4 |
monocyte | 1.67e-07 | 4 |
macrophage | 1.67e-07 | 4 |
tissue-resident macrophage | 1.67e-07 | 4 |
macrophage dendritic cell progenitor | 1.67e-07 | 4 |
monoblast | 1.67e-07 | 4 |
promonocyte | 1.67e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 2.17e-28 | 6 |
dorsal region element | 2.17e-28 | 6 |
dorsum | 2.17e-28 | 6 |
regional part of spinal cord | 2.63e-22 | 5 |
gray matter of spinal cord | 2.63e-22 | 5 |
posterior neural tube | 2.83e-20 | 12 |
chordal neural plate | 2.83e-20 | 12 |
dorsal horn of spinal cord | 2.94e-15 | 2 |
central nervous system | 2.61e-12 | 73 |
neural tube | 3.19e-12 | 52 |
neural rod | 3.19e-12 | 52 |
future spinal cord | 3.19e-12 | 52 |
neural keel | 3.19e-12 | 52 |
nervous system | 5.98e-12 | 75 |
ventral horn of spinal cord | 8.39e-10 | 3 |
neurectoderm | 9.74e-10 | 64 |
neural plate | 9.74e-10 | 64 |
presumptive neural plate | 9.74e-10 | 64 |
regional part of nervous system | 1.75e-09 | 54 |
gray matter | 2.23e-09 | 34 |
ectoderm-derived structure | 3.56e-09 | 95 |
ectoderm | 3.56e-09 | 95 |
presumptive ectoderm | 3.56e-09 | 95 |
ecto-epithelium | 2.10e-08 | 73 |
cavitated compound organ | 4.00e-08 | 21 |
cortex | 4.80e-08 | 1 |
zygote cortex | 4.80e-08 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.