FFCP PHASE1:Mm9::chr6:39507774..39507792,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=209773|HGNC=|MCL_coexpression_id=2444|UniProt=Q8C4S8,B7ZP28,D3Z1C6|association_with_transcript=40bp_to_NM_172477,uc009blx.1,uc009bly.1,uc009blz.1_5end|description=CAGE_peak_1_at_Dennd2a_5end|id=chr6:39507774..39507792,-|ontology_enrichment_celltype=CL:0000055!6.47e-08!50;CL:0000221!1.15e-07!44;CL:0000133!1.15e-07!44;CL:0002319!1.69e-07!43;CL:0000107!6.68e-07!9|ontology_enrichment_celltype_v019_2=CL:0000221,2.17e-07,44;CL:0000133,2.17e-07,44;CL:0002319,3.21e-07,43;CL:0000107,4.39e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000010!4.71e-08!11;UBERON:0000468!1.13e-07!333;UBERON:0002410!6.68e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000010,2.83e-08,11;UBERON:0002410,4.39e-07,9|phase1_expression=6.72625157840135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29616883407888,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0.837063261473815,0,0,1.76469446409304,0.683045484958446,2.91306211818692,1.38486499773135,1.11514624341466,1.83546752161682,5.47673941043627,6.1047043786525,12.9614847813338,4.47188767870852,2.65974201088189,18.6878333674463,0,0,0,7.46052364504246,2.29226751951005,3.6097046459421,2.63011399117477,5.81890077199236,4.43681982454325,4.40497891689872,1.77858959222228,2.6996991518442,0.988866362566974,1.4209602298922,4.19440154725767,7.30014780110954,1.97010263386108,1.89008313664367,0.630974884054146,4.85606673486466,2.20868540951614,1.10241719293459,1.34183659425531,0.919218786610021,0,0.766124028511126,1.68967186581868,1.58263545276233,3.47653045689157,1.04182674111352,0.279182999001381,1.12552522006336,1.37518422999129,3.24091444021034,3.55929201997757,3.54158947068071,5.60373830665562,12.7715936580468,3.47837386442013,4.30211938490693,0,0,0,0,0.561777680527007,0,0,0,3.23939865486365,0,0,0,0,0,0,0.91347103775248,0,1.03909497345377,2.60227990149204,1.21786191324856,2.07553947530453,1.3565037649736,3.76283862834255,1.63366568728578,1.23597483867187,0.289198713839823,0,1.61766849947409,1.10420759230197,0,0,0.585561594023094,1.67557365450764,0.766371165625774,0,0,0.381210681219194,1.3481157546434,0.457500602818626,2.1361239859187,1.21677024134594,1.79000820131231,1.24672826735736,1.29793010454206,7.73979165262404,0,0,1.89397670297827,4.03373373184381,4.36813998423599,6.12211241338187,7.68594570962147,7.34794190834341,6.27757229395764,5.528401749024,1.81092359517311,4.52692785158969,3.40390944302075,2.99116911078713,3.94552318369635,2.50242524303038,5.2237824978325,3.70407845534298,6.17006227137329,0,0,0,5.38527008592305,3.04883877975425,3.06105504483725,4.97163944728941,2.95146347621106,3.23960937063494,2.32533944750408,3.48755421819505,3.26942958628075,3.78487654801005,2.62667942526552,2.35099547682982,1.60819986167866,1.75640092232841,1.8788898626452,2.52347938276953,2.36680608472354,0,0.528901133327089,5.97207101498655,2.55460339046482,2.57734922644187,2.01683524623343,1.33426826306922,1.33157938278791,1.89811624617805,1.31759163779209,2.26201687920243,1.39269530428806,1.16978452271472,0.898819408654221,0.648414149624083,0.796565093017469,4.55202962287396,2.85621281524322,6.76246414038483,2.64746726198909,3.49114476901726,3.15611189506434,2.52946148497029,1.62371162777562,1.56998727841375,0.246794327843601,0.296452627087149,1.50160595144485,0.982794975566015,0.449724224769707,0.405720242777006,0.964708639009667,0.50925170356284,0.575392274901621,1.29708181420028,1.09824565275233,4.31304619582064,2.60498663367952,2.80833905803104,2.02063102357689,2.15276896226295,0,2.40179147216586,6.06372517665551,3.7481944581666,4.07388205860452,2.81628297946203,4.35516269348721,4.28478553594825,9.95181604074774,8.6699329258405,8.63712289630222,11.0023790373666,3.60499292374624,2.59027472798843,2.74833211304872,0,0.54390568381871,0.491764273019036,0.551873492609465,1.28440471990234,1.40654023910644,1.14754461763673,1.26235463602186,9.14973836307144,7.80877488593277,8.83235930704476,9.31978312014953,11.8083297263669,13.8707500086528,6.07216052512342,4.67609372658099,7.90575555893047,3.53453448063988,3.12268187458191,6.41036173202119,7.4928001302645,1.64970122972535,1.32745138339963,4.12727081463468,1.81394134178851,1.32023555829129,2.65771703592696,3.99665692327106,3.35956781118687,2.54473610634254,2.49548164869305,0.948110273807448,0,4.12542172992747,1.70219802876894,2.88097750450096,6.07985813778946,4.28674070063185,3.72414490648775,4.99432689285798,4.11372551505302,4.26250928760439,3.28540391289194,10.591603543191,0.441056796109924,0.65954501176592,2.26050197374268,2.29189114726992,1.55184047204077,1.14898629821543,2.91480836629851,2.03967832211561,0.854354403989263,8.2554747185289,5.37064129372164,1.88368457004691,1.91371918809435,0.686334519619568,0.509935289981566,0.839708713941948,0.690999869022119,0,5.3777118908793,2.23651413839534,1.94409613479242,2.29997125615916,1.31017538247707,2.02296519577231,3.2234847732881,1.30877970992015,0.518459893167171,0.621339313086926,0,3.58839710505549,2.97825282822776,4.66682852025714,3.87479470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| ||
|EntrezGene=209773 | |||
|HGNC= | |||
|MCL_coexpression_id=2444 | |||
|UniProt=Q8C4S8,B7ZP28,D3Z1C6 | |||
|association_with_transcript=40bp_to_NM_172477,uc009blx.1,uc009bly.1,uc009blz.1_5end | |||
|description=CAGE_peak_1_at_Dennd2a_5end | |||
|id=chr6:39507774..39507792,- | |||
|ontology_enrichment_celltype=CL:0000055!6.47e-08!50;CL:0000221!1.15e-07!44;CL:0000133!1.15e-07!44;CL:0002319!1.69e-07!43;CL:0000107!6.68e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.17e-07,44;CL:0000133,2.17e-07,44;CL:0002319,3.21e-07,43;CL:0000107,4.39e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000010!4.71e-08!11;UBERON:0000468!1.13e-07!333;UBERON:0002410!6.68e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,2.83e-08,11;UBERON:0002410,4.39e-07,9 | |||
|phase1_expression=6.72625157840135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29616883407888,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0.837063261473815,0,0,1.76469446409304,0.683045484958446,2.91306211818692,1.38486499773135,1.11514624341466,1.83546752161682,5.47673941043627,6.1047043786525,12.9614847813338,4.47188767870852,2.65974201088189,18.6878333674463,0,0,0,7.46052364504246,2.29226751951005,3.6097046459421,2.63011399117477,5.81890077199236,4.43681982454325,4.40497891689872,1.77858959222228,2.6996991518442,0.988866362566974,1.4209602298922,4.19440154725767,7.30014780110954,1.97010263386108,1.89008313664367,0.630974884054146,4.85606673486466,2.20868540951614,1.10241719293459,1.34183659425531,0.919218786610021,0,0.766124028511126,1.68967186581868,1.58263545276233,3.47653045689157,1.04182674111352,0.279182999001381,1.12552522006336,1.37518422999129,3.24091444021034,3.55929201997757,3.54158947068071,5.60373830665562,12.7715936580468,3.47837386442013,4.30211938490693,0,0,0,0,0.561777680527007,0,0,0,3.23939865486365,0,0,0,0,0,0,0.91347103775248,0,1.03909497345377,2.60227990149204,1.21786191324856,2.07553947530453,1.3565037649736,3.76283862834255,1.63366568728578,1.23597483867187,0.289198713839823,0,1.61766849947409,1.10420759230197,0,0,0.585561594023094,1.67557365450764,0.766371165625774,0,0,0.381210681219194,1.3481157546434,0.457500602818626,2.1361239859187,1.21677024134594,1.79000820131231,1.24672826735736,1.29793010454206,7.73979165262404,0,0,1.89397670297827,4.03373373184381,4.36813998423599,6.12211241338187,7.68594570962147,7.34794190834341,6.27757229395764,5.528401749024,1.81092359517311,4.52692785158969,3.40390944302075,2.99116911078713,3.94552318369635,2.50242524303038,5.2237824978325,3.70407845534298,6.17006227137329,0,0,0,5.38527008592305,3.04883877975425,3.06105504483725,4.97163944728941,2.95146347621106,3.23960937063494,2.32533944750408,3.48755421819505,3.26942958628075,3.78487654801005,2.62667942526552,2.35099547682982,1.60819986167866,1.75640092232841,1.8788898626452,2.52347938276953,2.36680608472354,0,0.528901133327089,5.97207101498655,2.55460339046482,2.57734922644187,2.01683524623343,1.33426826306922,1.33157938278791,1.89811624617805,1.31759163779209,2.26201687920243,1.39269530428806,1.16978452271472,0.898819408654221,0.648414149624083,0.796565093017469,4.55202962287396,2.85621281524322,6.76246414038483,2.64746726198909,3.49114476901726,3.15611189506434,2.52946148497029,1.62371162777562,1.56998727841375,0.246794327843601,0.296452627087149,1.50160595144485,0.982794975566015,0.449724224769707,0.405720242777006,0.964708639009667,0.50925170356284,0.575392274901621,1.29708181420028,1.09824565275233,4.31304619582064,2.60498663367952,2.80833905803104,2.02063102357689,2.15276896226295,0,2.40179147216586,6.06372517665551,3.7481944581666,4.07388205860452,2.81628297946203,4.35516269348721,4.28478553594825,9.95181604074774,8.6699329258405,8.63712289630222,11.0023790373666,3.60499292374624,2.59027472798843,2.74833211304872,0,0.54390568381871,0.491764273019036,0.551873492609465,1.28440471990234,1.40654023910644,1.14754461763673,1.26235463602186,9.14973836307144,7.80877488593277,8.83235930704476,9.31978312014953,11.8083297263669,13.8707500086528,6.07216052512342,4.67609372658099,7.90575555893047,3.53453448063988,3.12268187458191,6.41036173202119,7.4928001302645,1.64970122972535,1.32745138339963,4.12727081463468,1.81394134178851,1.32023555829129,2.65771703592696,3.99665692327106,3.35956781118687,2.54473610634254,2.49548164869305,0.948110273807448,0,4.12542172992747,1.70219802876894,2.88097750450096,6.07985813778946,4.28674070063185,3.72414490648775,4.99432689285798,4.11372551505302,4.26250928760439,3.28540391289194,10.591603543191,0.441056796109924,0.65954501176592,2.26050197374268,2.29189114726992,1.55184047204077,1.14898629821543,2.91480836629851,2.03967832211561,0.854354403989263,8.2554747185289,5.37064129372164,1.88368457004691,1.91371918809435,0.686334519619568,0.509935289981566,0.839708713941948,0.690999869022119,0,5.3777118908793,2.23651413839534,1.94409613479242,2.29997125615916,1.31017538247707,2.02296519577231,3.2234847732881,1.30877970992015,0.518459893167171,0.621339313086926,0,3.58839710505549,2.97825282822776,4.66682852025714,3.87479470433193,3.37912250981556,5.16371850041317,3.25510962109875,1.25831213310853,0.483168241652012,0,0,2.63542779877213,1.54066435747241,0.389762468933385,0.716106782669926,0.39736270956253,0.360586348559907,0.443068581523732,0.201932899896295,0.15241361331,0.100826185136841,0.0974578807397524,0,0,0.906921534460845,1.55390167361845,1.52513556236109,2.85403847818933,0.772758376128762,5.2551093126331,5.67770035228522,0.643105137237198,0,1.6942555278512,1.84130094602871,0.572895513439397,0.515559547031063,0,0,2.02506750069542,0.900642406448441,1.35942722695261,1.03552062350364,4.04770655578289,4.38927360741134,3.41467211508268,4.37592090722929,2.72497111416377,3.12533964365024,1.33348036680969,1.64828045791115,3.53011130550997,2.27427490587418,2.28131369901216,2.640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| |||
|short_description=p1@Dennd2a | |||
}} | |||
Revision as of 09:47, 14 September 2013
| Short description: | p1@Dennd2a |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Dennd2a_5end |
| Coexpression cluster: | MCL_coexpression_mm9:2444 |
| Association with transcript: | 40bp_to_NM_172477, uc009blx.1, uc009bly.1, uc009blz.1_5end |
| EntrezGene: | Dennd2a |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| ectodermal cell | 2.17e-07 | 44 |
| neurectodermal cell | 2.17e-07 | 44 |
| neural cell | 3.21e-07 | 43 |
| autonomic neuron | 4.39e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| peripheral nervous system | 2.83e-08 | 11 |
| autonomic nervous system | 4.39e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
