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MCL coexpression mm9:144: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002369!2.26e-09!7;UBERON:0006858!2.26e-09!7
|tfbs_overrepresentation_for_novel_motifs=0.59253,0.00717894,0.321802,1.04995,0.0205686,0.35782,3.67672,0.067791,0.0440214,0.000361256,0.134963,0.0639435,3.7193,0.197985,0.873899,0,0.0651922,18.671,0.0876157,0.623892,0.549882,0.0312832,0.0167431,0.0966976,2.41026,0.443399,2.227,0.110268,0.172088,0.58694,0.097996,0.345445,0.0418597,0.641141,0.123788,0.000145528,0.135045,0.329036,0.37816,0.0300497,0.165194,0.102401,0.560593,1.13228,0.00156619,0.16311,0.157583,0.449139,0.281255,0.441298,0.0591936,2.59011,0.104968,0.533064,0.558136,0.0812531,0.47551,0.311644,0.159376,2.22449,0.321494,0.118648,0.164302,0.203667,0.221185,0.523401,0.279862,0.555532,0.316009,0.432721,0.0780594,1.09942,0.00699404,0.211535,0.000570792,0.112332,0.19517,0.0375137,0.301537,1.03908,0.298114,0.0714823,0.833229,0.164127,0.444071,0.000478107,0.000215844,0.0256433,1.02491,0.698702,0.330105,0.147174,0.361117,5.18647,0.0220026,0.0347576,0.494762,0.736259,0.0405511,0.00594906,0.135191,1.15926,0.170443,0.0593925,1.72274,0.102021,0.581667,0.438693,0.254294,0.237826,0.0147636,0.510912,0.7915,0.489763,0.891075,0.729585,0.0166669,0.183975,0.0656526,0.321167,0.214937,0.411763,1.46274,0.964458,0.982054,0.633535,0.929779,0.109038,0.278801,0.111327,0.160841,0.73163,0.71693,0.0202523,0.35156,0.000885719,3.16017,1.20135,0.315014,1.0427,0.670058,0.283165,8.6189,0.111107,1.20867,1.19605,0.36636,1.0048,0.137019,0.41684,0.027494,6.02286e-07,0.181476,0.132617,1.85006,0.232194,0.0268008,0.240216,0.385544,0.252303,0.321978,0.870155,0.0916751,0.0143281,0.204648,0.673508,0.073137,0.0631351,0.000616091
}}

Latest revision as of 14:46, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:120814242..120814271,+p@chr10:120814242..120814271
+
Mm9::chr11:117093260..117093293,+p34@Sept9
Mm9::chr11:3093130..3093176,-p@chr11:3093130..3093176
-
Mm9::chr13:59930648..59930655,+p@chr13:59930648..59930655
+
Mm9::chr15:79801551..79801559,-p3@Cbx7
Mm9::chr1:121970313..121970380,-p1@Tmem37
Mm9::chr1:193090931..193090940,+p@chr1:193090931..193090940
+
Mm9::chr2:157614287..157614293,+p@chr2:157614287..157614293
+
Mm9::chr2:91536173..91536183,-p@chr2:91536173..91536183
-
Mm9::chr4:143998300..143998343,-p1@Pramef12
Mm9::chr6:128193496..128193521,-p@chr6:128193496..128193521
-
Mm9::chr6:128194447..128194451,-p@chr6:128194447..128194451
-
Mm9::chr6:128250380..128250442,-p2@Tead4
Mm9::chr6:4697360..4697372,+p1@Peg10
Mm9::chr6:4697610..4697613,+p@chr6:4697610..4697613
+
Mm9::chr6:4702802..4702812,+p@chr6:4702802..4702812
+
Mm9::chr6:4704131..4704145,+p@chr6:4704131..4704145
+
Mm9::chr6:4704193..4704201,+p@chr6:4704193..4704201
+
Mm9::chr6:4704231..4704242,+p@chr6:4704231..4704242
+
Mm9::chr6:4704235..4704257,-p@chr6:4704235..4704257
-
Mm9::chr6:4704246..4704275,+p@chr6:4704246..4704275
+
Mm9::chr6:4704429..4704440,+p@chr6:4704429..4704440
+
Mm9::chr6:4705119..4705137,+p@chr6:4705119..4705137
+
Mm9::chr6:4705356..4705357,+p@chr6:4705356..4705357
+
Mm9::chr6:4705368..4705384,+p@chr6:4705368..4705384
+
Mm9::chr6:4705397..4705408,+p@chr6:4705397..4705408
+
Mm9::chr6:4705442..4705462,+p@chr6:4705442..4705462
+
Mm9::chr6:4705566..4705573,+p@chr6:4705566..4705573
+
Mm9::chr6:4705579..4705590,+p@chr6:4705579..4705590
+
Mm9::chr6:4705598..4705607,+p@chr6:4705598..4705607
+
Mm9::chr6:4705723..4705751,+p@chr6:4705723..4705751
+
Mm9::chr6:4705792..4705809,+p@chr6:4705792..4705809
+
Mm9::chr6:4705947..4705948,+p@chr6:4705947..4705948
+
Mm9::chr6:4705983..4706002,+p@chr6:4705983..4706002
+
Mm9::chr6:4706051..4706066,+p@chr6:4706051..4706066
+
Mm9::chr6:4706526..4706550,+p6@Peg10
Mm9::chr6:4706592..4706605,+p7@Peg10
Mm9::chr6:4706602..4706612,-p@chr6:4706602..4706612
-
Mm9::chr6:4706672..4706693,+p2@Peg10
Mm9::chr6:4706711..4706725,+p3@Peg10
Mm9::chr6:4706731..4706742,+p8@Peg10
Mm9::chr6:4706797..4706816,+p9@Peg10
Mm9::chr6:4706860..4706872,+p10@Peg10
Mm9::chr6:4706948..4706960,+p5@Peg10
Mm9::chr6:4707385..4707402,+p@chr6:4707385..4707402
+
Mm9::chr6:4708548..4708581,+p@chr6:4708548..4708581
+
Mm9::chr6:4708669..4708682,+p@chr6:4708669..4708682
+
Mm9::chr6:4709492..4709504,+p@chr6:4709492..4709504
+
Mm9::chr6:4709526..4709537,+p@chr6:4709526..4709537
+
Mm9::chr6:4709597..4709606,+p@chr6:4709597..4709606
+
Mm9::chr6:4709651..4709663,+p@chr6:4709651..4709663
+
Mm9::chr6:4709674..4709695,+p@chr6:4709674..4709695
+
Mm9::chr6:4709714..4709719,+p@chr6:4709714..4709719
+
Mm9::chr6:4709769..4709781,+p@chr6:4709769..4709781
+
Mm9::chr6:4709807..4709819,+p@chr6:4709807..4709819
+
Mm9::chr6:4709838..4709848,+p@chr6:4709838..4709848
+
Mm9::chr6:4709903..4709934,+p@chr6:4709903..4709934
+
Mm9::chr6:4710024..4710050,+p@chr6:4710024..4710050
+
Mm9::chr6:4710055..4710099,+p@chr6:4710055..4710099
+
Mm9::chr6:4710101..4710110,+p@chr6:4710101..4710110
+
Mm9::chr9:103161824..103161848,-p@chr9:103161824..103161848
-
Mm9::chrX:108651566..108651573,-p6@Rps6ka6
Mm9::chrX:132133317..132133325,-p1@Nxf7
Mm9::chrX:133277680..133277684,-p9@Morf4l2
Mm9::chrX:133278214..133278231,-p2@Morf4l2
Mm9::chrX:141915185..141915200,-p@chrX:141915185..141915200
-
Mm9::chrX:22938813..22938828,-p3@Klhl13
Mm9::chrX:51078654..51078665,-p@chrX:51078654..51078665
-
Mm9::chrX:51079472..51079492,-p1@Zfp36l3
Mm9::chrX:51079498..51079509,-p3@Zfp36l3
Mm9::chrX:51079532..51079554,-p2@Zfp36l3
Mm9::chrX:51079569..51079578,-p4@Zfp36l3
Mm9::chrX:59536672..59536675,+p2@4933402E13Rik
Mm9::chrX:66015014..66015048,+p1@Fmr1nb
Mm9::chrX:66015050..66015062,+p2@Fmr1nb
Mm9::chrX:6989900..6989914,-p1@ENSMUST00000147870
Mm9::chrX:91381444..91381448,-p@chrX:91381444..91381448
-
Mm9::chrX:98449898..98449913,+p2@Foxo4
Mm9::chrX:98455511..98455518,+p@chrX:98455511..98455518
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
adrenal gland2.26e-097
adrenal/interrenal gland2.26e-097


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.17.94945e-09
MA0004.10.325576
MA0006.10.20069
MA0007.10.701947
MA0009.10.118711
MA0014.17.94205e-08
MA0017.10.406068
MA0019.11.09748
MA0024.10.666775
MA0025.10.255373
MA0027.11.52885
MA0028.10.00242238
MA0029.145.1767
MA0030.10.0919127
MA0031.11.42856
MA0038.11.4528
MA0040.10.124843
MA0041.10.304129
MA0042.10.0769809
MA0043.10.169869
MA0046.10.136713
MA0048.10.0258718
MA0050.10.00760594
MA0051.10.023053
MA0052.10.128871
MA0055.10.0280156
MA0056.10
MA0057.11.38288
MA0058.10.591566
MA0059.11.15702
MA0060.10.0313279
MA0061.10.919866
MA0063.10
MA0066.10.0868576
MA0067.10.334393
MA0068.10.203929
MA0069.10.404782
MA0070.11.85645
MA0071.11.25981
MA0072.10.381571
MA0073.10.00254986
MA0074.10.869577
MA0076.10.107674
MA0077.10.109727
MA0078.11.23768
MA0081.10.0434243
MA0083.10.505888
MA0084.10.602333
MA0087.12.03174
MA0088.10.0011695
MA0089.10
MA0090.10.876523
MA0091.10.19847
MA0092.12.70174
MA0093.10.245924
MA0095.10
MA0098.10
MA0100.10.545388
MA0101.11.21721
MA0103.10.849916
MA0105.10.353734
MA0106.10.03153
MA0107.11.97069
MA0108.20.77356
MA0109.10
MA0111.10.0213522
MA0113.11.14939
MA0114.10.701869
MA0115.10.171473
MA0116.10.00845182
MA0117.10.153389
MA0119.10.0105725
MA0122.10.164406
MA0124.12.22766
MA0125.10.684711
MA0130.10
MA0131.10.0462055
MA0132.10
MA0133.10
MA0135.10.191251
MA0136.10.0773904
MA0139.10.000468504
MA0140.10.161602
MA0141.10.00581007
MA0142.11.37214
MA0143.12.67246
MA0144.10.395405
MA0145.10.000261865
MA0146.16.26979e-06
MA0147.10.206423
MA0148.11.87663
MA0149.10.0113461
MA0062.21.55067e-05
MA0035.20.166862
MA0039.20.000886395
MA0138.20.0439435
MA0002.20.000517956
MA0137.20.213738
MA0104.20.223711
MA0047.22.38297
MA0112.20.0169487
MA0065.20.0771538
MA0150.10.292386
MA0151.10
MA0152.10.0213011
MA0153.10.201374
MA0154.10.523613
MA0155.10.000616439
MA0156.10.00469626
MA0157.10.476285
MA0158.10
MA0159.12.29116
MA0160.10.0328701
MA0161.10
MA0162.16.82681e-05
MA0163.13.97083e-06
MA0164.10.0170125
MA0080.20.0417064
MA0018.20.0185394
MA0099.20.663497
MA0079.23.58987e-05
MA0102.20.648605
MA0258.10.041402
MA0259.10.0101926
MA0442.10
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