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MCL coexpression mm9:228: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001048!8.73e-12!134;UBERON:0000475!7.02e-07!150;UBERON:0000464!7.38e-07!57;UBERON:0001041!8.93e-07!80
}}

Latest revision as of 14:55, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:115952450..115952453,-p@chr10:115952450..115952453
-
Mm9::chr10:115996350..115996356,-p@chr10:115996350..115996356
-
Mm9::chr11:113033171..113033186,-p@chr11:113033171..113033186
-
Mm9::chr11:113033256..113033273,-p@chr11:113033256..113033273
-
Mm9::chr12:111739014..111739018,+p@chr12:111739014..111739018
+
Mm9::chr13:55669433..55669438,-p@chr13:55669433..55669438
-
Mm9::chr13:91635849..91635850,+p@chr13:91635849..91635850
+
Mm9::chr14:21357399..21357403,-p@chr14:21357399..21357403
-
Mm9::chr15:80552948..80552952,+p@chr15:80552948..80552952
+
Mm9::chr15:86299429..86299430,+p@chr15:86299429..86299430
+
Mm9::chr1:43504060..43504064,+p@chr1:43504060..43504064
+
Mm9::chr1:43551614..43551616,+p@chr1:43551614..43551616
+
Mm9::chr2:33710686..33710691,-p@chr2:33710686..33710691
-
Mm9::chr2:70883030..70883038,-p@chr2:70883030..70883038
-
Mm9::chr4:102796192..102796195,+p@chr4:102796192..102796195
+
Mm9::chr4:102806134..102806139,+p@chr4:102806134..102806139
+
Mm9::chr5:136914694..136914698,-p@chr5:136914694..136914698
-
Mm9::chr5:136941934..136941940,-p@chr5:136941934..136941940
-
Mm9::chr5:136947891..136947938,-p@chr5:136947891..136947938
-
Mm9::chr5:137022705..137022710,-p@chr5:137022705..137022710
-
Mm9::chr5:137039191..137039195,-p@chr5:137039191..137039195
-
Mm9::chr5:148243589..148243593,+p@chr5:148243589..148243593
+
Mm9::chr7:74400183..74400190,-p@chr7:74400183..74400190
-
Mm9::chr9:21431821..21431825,+p@chr9:21431821..21431825
+
Mm9::chr9:21500065..21500069,+p@chr9:21500065..21500069
+
Mm9::chr9:71823782..71823787,-p@chr9:71823782..71823787
-
Mm9::chr9:71823926..71823928,-p@chr9:71823926..71823928
-
Mm9::chr9:71844111..71844114,-p@chr9:71844111..71844114
-
Mm9::chr9:71844444..71844448,-p@chr9:71844444..71844448
-
Mm9::chr9:71858279..71858283,-p@chr9:71858279..71858283
-
Mm9::chr9:71882796..71882800,-p@chr9:71882796..71882800
-
Mm9::chr9:71894882..71894888,-p@chr9:71894882..71894888
-
Mm9::chr9:71938061..71938094,-p@chr9:71938061..71938094
-
Mm9::chr9:71938201..71938205,-p@chr9:71938201..71938205
-
Mm9::chr9:72142119..72142122,+p@chr9:72142119..72142122
+
Mm9::chr9:72200173..72200177,+p@chr9:72200173..72200177
+
Mm9::chr9:72205581..72205585,+p@chr9:72205581..72205585
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primordium8.73e-12134
organism subdivision7.02e-07150
anatomical space7.38e-0757
foregut8.93e-0780


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.7243e-11
MA0004.10.203943
MA0006.10.0127788
MA0007.10.0503373
MA0009.10.837274
MA0014.13.30935e-08
MA0017.10.200202
MA0019.10.542303
MA0024.10.2788
MA0025.10.500436
MA0027.11.85482
MA0028.10.0143967
MA0029.11.3388
MA0030.11.35623
MA0031.10.242604
MA0038.10.381538
MA0040.11.54826
MA0041.13.36707
MA0042.12.6623
MA0043.10.386827
MA0046.10.338806
MA0048.10.000319981
MA0050.10.902951
MA0051.10.124774
MA0052.10.872393
MA0055.11.69962e-05
MA0056.10
MA0057.10.00188685
MA0058.10.113118
MA0059.10.0299817
MA0060.10.00416002
MA0061.10.0355727
MA0063.10
MA0066.10.114312
MA0067.10.597474
MA0068.11.38579
MA0069.10.327233
MA0070.11.54474
MA0071.10.0701355
MA0072.10.313384
MA0073.10.000372823
MA0074.10.0965411
MA0076.10.020823
MA0077.10.805245
MA0078.10.44023
MA0081.10.605436
MA0083.10.386189
MA0084.10.899737
MA0087.10.351973
MA0088.14.49161e-05
MA0089.10
MA0090.10.382547
MA0091.10.475676
MA0092.10.383142
MA0093.10.188923
MA0095.10
MA0098.10
MA0100.10.304777
MA0101.10.0323029
MA0103.10.216153
MA0105.10.00663914
MA0106.10.884457
MA0107.10.0180044
MA0108.20.198959
MA0109.10
MA0111.10.409621
MA0113.10.131594
MA0114.10.100825
MA0115.10.389079
MA0116.10.012748
MA0117.10.363331
MA0119.10.0324589
MA0122.10.987913
MA0124.11.35687
MA0125.10.486591
MA0130.10
MA0131.10.181514
MA0132.10
MA0133.10
MA0135.10.4164
MA0136.10.34534
MA0139.10.0494054
MA0140.10.304632
MA0141.10.100135
MA0142.11.22432
MA0143.11.38097
MA0144.10.00670385
MA0145.10.000642084
MA0146.11.55988e-05
MA0147.10.0414495
MA0148.10.832383
MA0149.18.57715
MA0062.20.00742176
MA0035.20.0932484
MA0039.22.95999e-07
MA0138.20.523377
MA0002.20.121009
MA0137.20.0979218
MA0104.20.0195761
MA0047.20.380493
MA0112.20.0596743
MA0065.20.060215
MA0150.10.0502988
MA0151.10
MA0152.10.380639
MA0153.10.430089
MA0154.10.0105053
MA0155.10.016139
MA0156.10.0909568
MA0157.10.210953
MA0158.10
MA0159.10.266456
MA0160.10.0627383
MA0161.10
MA0162.13.74312e-05
MA0163.12.92469e-06
MA0164.10.106401
MA0080.20.0819057
MA0018.20.111278
MA0099.20.172684
MA0079.21.05208e-13
MA0102.20.949579
MA0258.10.0872645
MA0259.10.0365812
MA0442.10
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