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MCL coexpression mm9:368: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001048!2.78e-13!134;UBERON:0000464!2.50e-08!57;UBERON:0000475!3.64e-07!150;UBERON:0000466!5.57e-07!79;UBERON:0001041!8.71e-07!80
|tfbs_overrepresentation_for_novel_motifs=0.128666,0.00275503,0.11338,0.915567,0.458154,0.493109,0.227275,0.253111,0.112313,0.000974343,0.195931,0.623949,0.024177,0.23628,0.497341,0,0.38962,0.0539173,0.0898284,0.0289853,0.641818,0.00220817,0.235613,0.454575,0.117721,0.256873,0.664709,0.178177,0.0778495,0.050744,0.168752,0.476579,0.0529999,0.0671598,0.0646774,0.00311975,0.0492863,0.21594,0.365025,0.0314971,0.782097,0.172188,0.0947541,0.232623,0.0145942,0.147728,0.323935,0.188927,0.387527,0.0792869,0.374992,0.277452,0.0463743,0.603398,0.619345,0.241579,1.00244,0.209397,0.0753109,0.240064,0.459084,0.284775,0.124057,0.365621,0.2499,0.399544,0.745869,1.08074,0.455021,0.938231,0.102831,0.49418,0.00260119,0.650163,0.0150431,0.327704,0.176178,0.314806,0.444191,0.0954455,0.266969,0.404291,1.41437,1.08206,0.545133,0.000236268,0.0773437,0.0508374,0.327889,1.23935,0.811671,0.549603,1.22343,0.471954,0.0396727,0.318866,0.248387,0.490297,0.324141,0.0378618,0.728357,0.476334,0.58753,0.979946,0.374608,0.171895,0.42513,1.04357,0.0980442,0.0941582,0.124464,0.58915,0.655302,0.199544,0.818358,0.20155,0.000563899,0.157255,0.390716,0.715243,0.655146,0.348339,0.716525,0.843502,0.869916,0.447391,0.233251,0.481866,0.744444,0.220019,0.572132,0.458245,0.716744,0.251791,0.838892,0.0135633,0.416802,0.514981,0.792231,1.60311,1.2081,0.750296,0.267427,0.48577,0.369214,0.172491,1.56832,1.56378,0.135184,0.0579622,0.0524131,0.0016498,0.60483,0.331339,0.699993,0.680035,0.278231,0.245756,0.40004,0.133575,0.801233,0.544365,0.447776,0.123129,0.366469,0.687124,0.0488479,0.62125,4.32009e-05
|tfbs_overrepresentation_jaspar=MA0003.1;1.00812e-05,MA0004.1;0.15514,MA0006.1;0.0625076,MA0007.1;0.145624,MA0009.1;1.24915,MA0014.1;3.96127e-05,MA0017.1;0.550491,MA0019.1;0.91105,MA0024.1;0.461433,MA0025.1;0.712532,MA0027.1;2.09948,MA0028.1;0.067163,MA0029.1;0.442582,MA0030.1;1.13842,MA0031.1;0.417663,MA0038.1;0.256813,MA0040.1;2.19715,MA0041.1;1.72923,MA0042.1;1.6641,MA0043.1;0.586618,MA0046.1;0.531807,MA0048.1;0.00730033,MA0050.1;1.02182,MA0051.1;0.263603,MA0052.1;0.518112,MA0055.1;0.00255547,MA0056.1;0,MA0057.1;0.00588043,MA0058.1;0.0984787,MA0059.1;0.105184,MA0060.1;0.0321237,MA0061.1;0.0422754,MA0063.1;0,MA0066.1;0.248543,MA0067.1;0.817149,MA0068.1;0.0343014,MA0069.1;0.518414,MA0070.1;0.509795,MA0071.1;0.180178,MA0072.1;0.502282,MA0073.1;4.70219e-06,MA0074.1;0.222108,MA0076.1;0.0840393,MA0077.1;0.48317,MA0078.1;1.43418,MA0081.1;0.118266,MA0083.1;0.585897,MA0084.1;1.1333,MA0087.1;1.34927,MA0088.1;0.00238225,MA0089.1;0,MA0090.1;0.133736,MA0091.1;0.491727,MA0092.1;0.417266,MA0093.1;0.0709755,MA0095.1;0,MA0098.1;0,MA0100.1;0.612698,MA0101.1;0.110172,MA0103.1;0.57683,MA0105.1;0.0133959,MA0106.1;0.295186,MA0107.1;0.0769078,MA0108.2;0.363107,MA0109.1;0,MA0111.1;0.438839,MA0113.1;0.273246,MA0114.1;0.160582,MA0115.1;0.589161,MA0116.1;0.0624169,MA0117.1;0.559943,MA0119.1;0.110503,MA0122.1;0.577888,MA0124.1;0.766819,MA0125.1;0.697415,MA0130.1;0,MA0131.1;0.340612,MA0132.1;0,MA0133.1;0,MA0135.1;1.5028,MA0136.1;0.666439,MA0139.1;0.0230855,MA0140.1;0.2137,MA0141.1;0.0898383,MA0142.1;0.40532,MA0143.1;0.285913,MA0144.1;0.0425459,MA0145.1;0.00295235,MA0146.1;8.22358e-05,MA0147.1;0.0471319,MA0148.1;0.960549,MA0149.1;0.113293,MA0062.2;0.0144279,MA0035.2;0.217072,MA0039.2;6.09268e-08,MA0138.2;0.334152,MA0002.2;0.251244,MA0137.2;0.0883456,MA0104.2;0.0278464,MA0047.2;2.02703,MA0112.2;0.00295203,MA0065.2;0.0584336,MA0150.1;0.145553,MA0151.1;0,MA0152.1;0.712054,MA0153.1;0.635107,MA0154.1;0.00701262,MA0155.1;0.0237983,MA0156.1;0.0836044,MA0157.1;0.378326,MA0158.1;0,MA0159.1;0.051085,MA0160.1;0.167661,MA0161.1;0,MA0162.1;0.000145355,MA0163.1;0.0150587,MA0164.1;0.667063,MA0080.2;0.563938,MA0018.2;0.244112,MA0099.2;0.329046,MA0079.2;5.11826e-06,MA0102.2;1.18455,MA0258.1;0.145568,MA0259.1;0.0431217,MA0442.1;0
}}

Latest revision as of 15:11, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:104238691..104238694,-p@chr11:104238691..104238694
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Mm9::chr11:105052118..105052122,+p@chr11:105052118..105052122
+
Mm9::chr11:75548072..75548077,+p@chr11:75548072..75548077
+
Mm9::chr12:52735906..52735909,-p@chr12:52735906..52735909
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Mm9::chr12:52737651..52737656,-p@chr12:52737651..52737656
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Mm9::chr12:84982450..84982455,+p@chr12:84982450..84982455
+
Mm9::chr14:120807731..120807736,+p@chr14:120807731..120807736
+
Mm9::chr14:31885345..31885349,+p@chr14:31885345..31885349
+
Mm9::chr17:53632213..53632217,+p@chr17:53632213..53632217
+
Mm9::chr18:61735828..61735833,+p@chr18:61735828..61735833
+
Mm9::chr1:129680161..129680171,+p@chr1:129680161..129680171
+
Mm9::chr2:126689006..126689010,-p@chr2:126689006..126689010
-
Mm9::chr2:24690099..24690104,-p@chr2:24690099..24690104
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Mm9::chr3:152078741..152078745,+p@chr3:152078741..152078745
+
Mm9::chr3:88506036..88506041,+p@chr3:88506036..88506041
+
Mm9::chr3:95135608..95135612,-p@chr3:95135608..95135612
-
Mm9::chr4:11462428..11462432,+p@chr4:11462428..11462432
+
Mm9::chr4:34782111..34782114,-p@chr4:34782111..34782114
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Mm9::chr5:134752863..134752869,-p@chr5:134752863..134752869
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Mm9::chr6:83903867..83903870,+p@chr6:83903867..83903870
+
Mm9::chr8:113771187..113771191,-p@chr8:113771187..113771191
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primordium2.78e-13134
anatomical space2.50e-0857
organism subdivision3.64e-07150
immaterial anatomical entity5.57e-0779
foregut8.71e-0780


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.00812e-05
MA0004.10.15514
MA0006.10.0625076
MA0007.10.145624
MA0009.11.24915
MA0014.13.96127e-05
MA0017.10.550491
MA0019.10.91105
MA0024.10.461433
MA0025.10.712532
MA0027.12.09948
MA0028.10.067163
MA0029.10.442582
MA0030.11.13842
MA0031.10.417663
MA0038.10.256813
MA0040.12.19715
MA0041.11.72923
MA0042.11.6641
MA0043.10.586618
MA0046.10.531807
MA0048.10.00730033
MA0050.11.02182
MA0051.10.263603
MA0052.10.518112
MA0055.10.00255547
MA0056.10
MA0057.10.00588043
MA0058.10.0984787
MA0059.10.105184
MA0060.10.0321237
MA0061.10.0422754
MA0063.10
MA0066.10.248543
MA0067.10.817149
MA0068.10.0343014
MA0069.10.518414
MA0070.10.509795
MA0071.10.180178
MA0072.10.502282
MA0073.14.70219e-06
MA0074.10.222108
MA0076.10.0840393
MA0077.10.48317
MA0078.11.43418
MA0081.10.118266
MA0083.10.585897
MA0084.11.1333
MA0087.11.34927
MA0088.10.00238225
MA0089.10
MA0090.10.133736
MA0091.10.491727
MA0092.10.417266
MA0093.10.0709755
MA0095.10
MA0098.10
MA0100.10.612698
MA0101.10.110172
MA0103.10.57683
MA0105.10.0133959
MA0106.10.295186
MA0107.10.0769078
MA0108.20.363107
MA0109.10
MA0111.10.438839
MA0113.10.273246
MA0114.10.160582
MA0115.10.589161
MA0116.10.0624169
MA0117.10.559943
MA0119.10.110503
MA0122.10.577888
MA0124.10.766819
MA0125.10.697415
MA0130.10
MA0131.10.340612
MA0132.10
MA0133.10
MA0135.11.5028
MA0136.10.666439
MA0139.10.0230855
MA0140.10.2137
MA0141.10.0898383
MA0142.10.40532
MA0143.10.285913
MA0144.10.0425459
MA0145.10.00295235
MA0146.18.22358e-05
MA0147.10.0471319
MA0148.10.960549
MA0149.10.113293
MA0062.20.0144279
MA0035.20.217072
MA0039.26.09268e-08
MA0138.20.334152
MA0002.20.251244
MA0137.20.0883456
MA0104.20.0278464
MA0047.22.02703
MA0112.20.00295203
MA0065.20.0584336
MA0150.10.145553
MA0151.10
MA0152.10.712054
MA0153.10.635107
MA0154.10.00701262
MA0155.10.0237983
MA0156.10.0836044
MA0157.10.378326
MA0158.10
MA0159.10.051085
MA0160.10.167661
MA0161.10
MA0162.10.000145355
MA0163.10.0150587
MA0164.10.667063
MA0080.20.563938
MA0018.20.244112
MA0099.20.329046
MA0079.25.11826e-06
MA0102.21.18455
MA0258.10.145568
MA0259.10.0431217
MA0442.10
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