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MCL coexpression mm9:377: Difference between revisions

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{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0,0.116399128544956,0.114747756044487,0.213314194397436,0.201042947080785,0.146197363631581,0.135387138629688,0.0746577067347575,0.0217685695707247,0.0283766623542968,0.0153960077537653,0.0162440561319894,0.0388595306961315,0.0207349631308431,0.0062432954297476,0.0143103543906969,0,0.0190346765729239,0.0130620505218332,0.0210256940296116,0.0244808880235318,0.00205563265474198,0.0091264327487216,0.170853269744701,0.174072072858529,0.136725490077032,0.15398982253869,0.111657778283994,0.250064731298067,0.193701016464313,0.149653517678544,0.0341080846539981,0.0174165048597198,0,0.164367041817171,0.125825607078013,0.145011418488852,0.0075919512117871,0,0,0.0100456901012675,0,0.0085937841448715,0.00257492958628459,0.00209679878844212,0.00365927089968535,0,0,0.00431240519609854,0,0,0,0.0145186174082814,0.0118440132246796,0.0263054781809746,0,0,0,0,0,0,0.00633650746208235,0,0,0,0,0,0,0.00214234775414374,0,0,0,0,0,0,0,0.0161229439267586,0.0026094352054724,0.00310288534679737,0,0,0,0.0106932678779961,0.0096946505969497,0,0,0.00578074284787346,0,0.00158508717912236,0,0,0,0.0112650935589492,0.0187437010020026,0.0470355938112604,0.0138925325125718,0.0720322114135262,0,0,0.0116075941310988,0.00286130208973782,0,0,0,0.00425544574333691,0.00490378919021906,0.0151711314366488,0.119952125992867,0.0274553449551483,0.0056450612709769,0.00694776635602275,0,0.0114180477577732,0.0138221376008974,0.00837110760417155,0.0146581599762329,0.0642221304376177,0.0055159931784814,0.0412832427610961,0.0191105462074224,0.00433296451889376,0,0.136131306548832,0.00557624462303155,0,0.147195825060845,0.00491463288895459,0.01711921380199,0.0214748208633081,0,0,0,0.00348015516584171,0.0049445620134025,0,0.0032648145069755,0.00842365674734102,0.00943319688340364,0.00978549673988937,0.0224021555715882,0.00767891481643271,0.00449352723065537,0.0243885296263969,0.0287270314655356,0.025331817535284,0.0258994682267741,0.0315699578056721,0.0445247381229282,0.00423896280848124,0.00376102998814686,0.00351946358075573,0.0121975265602206,0.00532734549622995,0.006488556341682,0.019675359713545,0.0101666435600134,0,0.00994554632344034,0.0108620321524749,0.0116139592116346,0.00915002620172692,0.00359524240942892,0.0176453588863007,0.00720579219076845,0.00311531610083686,0.0114917917905386,0.0231429856434404,0.00455749786336121,0.0123564095038589,0.00330077287713024,0.00641982923439256,0.00592603993571966,0.00861996515928926,0,0.00414447132477162,0,0.176556472727976,0.202652161183619,0.0283557519445328,0.0670462820342246,0.333527993682332,0.819890779141452,1.02183105205163,1.03854029824049,0.207099621234562,0.563718683796808,0.52769402765798,0.455385166867461,0.476806962039466,0.179985589760302,0.258339959535074,0.200180032020994,0.00698350044299415,0.0234477789764417,0.0163891642222267,0.0362379983046481,0.0587672098790124,0.0249173479162993,0.025700394729136,0.0197526176472335,0.0326644180110382,0.020836141119701,0.0332692555614004,0.013172636681102,0.00779341159210384,0.00440436005947919,0.00802151268900158,0.019356596492413,0.0429386289302637,0.0292254015931717,0.0164693507109878,0.009504292666612,0.0193488531055193,0.0197974388861628,0.0293859014518412,0.0211267912486411,0.0286770780553175,0.0232157872597278,0.00368139433955263,0.0173100005298119,0.00655666358230307,0.0152848236781768,0.0045779009027853,0.00963722769340982,0,0,0.0115873283389007,0,0.00321269055488328,0.008682472340789,0.00644208637727105,0.00586723554240733,0.0199656219422929,0,0,0,0,0.00938675381299399,0,0,0,0,0,0,0.00436774795678287,0,0,0,0,0.0060504220684743,0.00830839046778844,0.00711694759496908,0.00327687501780757,0.0225687117169286,0,0.022753700133961,0.0274768114161738,0.0144537690866739,0.0156966505976237,0.0162278901062865,0.219036227303721,0,0.00662094793827,0,0,0,0.012724725138213,0.00719044921483595,0.00976225784506602,0.00421696201982708,0.00709019855629759,0,0.00661577744756082,0.0057716207064756,0.0175113152255086,0.0243588656869727,0,0.0128172194758928,0.0330860745447396,0.0159145806304264,0.0126120941412737,0.024161515213776,0.224618396377842,0.00738741926906438,0.010276350804561,0.0122229901605505,0.0142211578096339,0.00374755578790873,0.0052480454112843,0.0126549420575931,0.00681778550615498,0.0056886356216389,0.007531681480981,0,0.0127543120142581,0.0344550155501434,0.21523388094596,0.0974115525680086,0.213838526144965,0.0331666164524625,0.0306558601582272,0,0.193941884166691,0.054289686347183,0.0573037819674481,0.00605152268483434,0.00664968100861445,0.00385842034280588,0.00711132829447295,0.00677982110636083,0.00457832701852885,0.0148437368715841,0.0100735380492696,0,0.0208712355741446,0.0106363036519303,0.0073907766449828,0.0194255456865521,0.0241317041006128,0.0159806670339039,0.0206603835089707,0.0226078284794375,0.0281242520162583,0.0176914037147919,0.0243140059400523,0.015518417137224,0.0244396462342295,0.0232192817747367,0.0204082571285953,0,0,0.00517550346746255,0.00673999378519914,0.0076709457165632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63102,MA0076.1;0.0921124,MA0077.1;0.500504,MA0078.1;0.303693,MA0081.1;0.402057,MA0083.1;0.604132,MA0084.1;1.15371,MA0087.1;0.564877,MA0088.1;0.0594972,MA0089.1;0,MA0090.1;0.442974,MA0091.1;0.175078,MA0092.1;0.14428,MA0093.1;0.269439,MA0095.1;0,MA0098.1;0,MA0100.1;0.226682,MA0101.1;0.119531,MA0103.1;0.295593,MA0105.1;0.0732718,MA0106.1;0.309901,MA0107.1;0.286884,MA0108.2;0.378962,MA0109.1;0,MA0111.1;0.153116,MA0113.1;0.287528,MA0114.1;1.53666,MA0115.1;1.47674,MA0116.1;0.0692153,MA0117.1;0.577975,MA0119.1;0.119877,MA0122.1;0.596061,MA0124.1;0.786128,MA0125.1;0.716372,MA0130.1;0,MA0131.1;0.937216,MA0132.1;0,MA0133.1;0,MA0135.1;0.638323,MA0136.1;0.697748,MA0139.1;0.505135,MA0140.1;0.226598,MA0141.1;3.58881,MA0142.1;0.421761,MA0143.1;0.300449,MA0144.1;1.10234,MA0145.1;0.287495,MA0146.1;0.697456,MA0147.1;0.0528647,MA0148.1;0.17717,MA0149.1;0.12279,MA0062.2;0.638596,MA0035.2;0.230058,MA0039.2;0.194181,MA0138.2;0.349554,MA0002.2;0.277315,MA0137.2;1.09444,MA0104.2;0.0319344,MA0047.2;0.270154,MA0112.2;2.88138,MA0065.2;0.694713,MA0150.1;0.156344,MA0151.1;0,MA0152.1;0.270237,MA0153.1;2.66036,MA0154.1;0.256358,MA0155.1;0.5414,MA0156.1;0.634341,MA0157.1;0.394402,MA0158.1;0,MA0159.1;0.208462,MA0160.1;3.04576,MA0161.1;0,MA0162.1;0.0572271,MA0163.1;0.401382,MA0164.1;0.250399,MA0080.2;0.288132,MA0018.2;0.257759,MA0099.2;0.344363,MA0079.2;0.0448848,MA0102.2;1.20505,MA0258.1;5.82779,MA0259.1;0.048545,MA0442.1;0}}

Latest revision as of 15:12, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:19923411..19923422,+p@chr10:19923411..19923422
+
Mm9::chr10:19924665..19924706,+p@chr10:19924665..19924706
+
Mm9::chr11:108102342..108102362,-p@chr11:108102342..108102362
-
Mm9::chr11:94143145..94143179,+p@chr11:94143145..94143179
+
Mm9::chr12:110986243..110986261,+p@chr12:110986243..110986261
+
Mm9::chr12:110986262..110986282,+p@chr12:110986262..110986282
+
Mm9::chr12:110986302..110986325,+p@chr12:110986302..110986325
+
Mm9::chr12:110986335..110986344,+p@chr12:110986335..110986344
+
Mm9::chr17:27221918..27221925,+p@chr17:27221918..27221925
+
Mm9::chr1:78308551..78308554,-p@chr1:78308551..78308554
-
Mm9::chr2:153067445..153067460,-p6@Plagl2
Mm9::chr2:20646176..20646187,+p@chr2:20646176..20646187
+
Mm9::chr4:106136833..106136837,+p@chr4:106136833..106136837
+
Mm9::chr4:153845387..153845419,-p@chr4:153845387..153845419
-
Mm9::chr5:139830163..139830176,+p@chr5:139830163..139830176
+
Mm9::chr7:120960495..120960506,-p@chr7:120960495..120960506
-
Mm9::chr7:139781456..139781471,-p@chr7:139781456..139781471
-
Mm9::chr7:146546790..146546830,-p@chr7:146546790..146546830
-
Mm9::chr9:114299271..114299285,+p@chr9:114299271..114299285
+
Mm9::chr9:80575508..80575520,+p@chr9:80575508..80575520
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
gastrointestinal system1.35e-0947
intestine2.13e-0931


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.052746
MA0004.10.166273
MA0006.10.522852
MA0007.10.156418
MA0009.10.517357
MA0014.10.0577434
MA0017.10.991585
MA0019.10.359884
MA0024.10.47854
MA0025.10.731571
MA0027.12.12059
MA0028.10.0742616
MA0029.11.16259
MA0030.10.465221
MA0031.10.434261
MA0038.10.270746
MA0040.10.528552
MA0041.10.118772
MA0042.10.11115
MA0043.10.604858
MA0046.14.59675
MA0048.10.454093
MA0050.10.19271
MA0051.10.277682
MA0052.10.535783
MA0055.10.587725
MA0056.10
MA0057.10.109748
MA0058.10.107291
MA0059.10.114315
MA0060.10.0366148
MA0061.10.179869
MA0063.10
MA0066.14.71375
MA0067.10.836675
MA0068.10.943311
MA0069.10.536088
MA0070.10.52739
MA0071.11.06732
MA0072.10.519805
MA0073.10.00511009
MA0074.10.663102
MA0076.10.0921124
MA0077.10.500504
MA0078.10.303693
MA0081.10.402057
MA0083.10.604132
MA0084.11.15371
MA0087.10.564877
MA0088.10.0594972
MA0089.10
MA0090.10.442974
MA0091.10.175078
MA0092.10.14428
MA0093.10.269439
MA0095.10
MA0098.10
MA0100.10.226682
MA0101.10.119531
MA0103.10.295593
MA0105.10.0732718
MA0106.10.309901
MA0107.10.286884
MA0108.20.378962
MA0109.10
MA0111.10.153116
MA0113.10.287528
MA0114.11.53666
MA0115.11.47674
MA0116.10.0692153
MA0117.10.577975
MA0119.10.119877
MA0122.10.596061
MA0124.10.786128
MA0125.10.716372
MA0130.10
MA0131.10.937216
MA0132.10
MA0133.10
MA0135.10.638323
MA0136.10.697748
MA0139.10.505135
MA0140.10.226598
MA0141.13.58881
MA0142.10.421761
MA0143.10.300449
MA0144.11.10234
MA0145.10.287495
MA0146.10.697456
MA0147.10.0528647
MA0148.10.17717
MA0149.10.12279
MA0062.20.638596
MA0035.20.230058
MA0039.20.194181
MA0138.20.349554
MA0002.20.277315
MA0137.21.09444
MA0104.20.0319344
MA0047.20.270154
MA0112.22.88138
MA0065.20.694713
MA0150.10.156344
MA0151.10
MA0152.10.270237
MA0153.12.66036
MA0154.10.256358
MA0155.10.5414
MA0156.10.634341
MA0157.10.394402
MA0158.10
MA0159.10.208462
MA0160.13.04576
MA0161.10
MA0162.10.0572271
MA0163.10.401382
MA0164.10.250399
MA0080.20.288132
MA0018.20.257759
MA0099.20.344363
MA0079.20.0448848
MA0102.21.20505
MA0258.15.82779
MA0259.10.048545
MA0442.10
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