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MCL coexpression mm9:379: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000468!1.52e-08!333
|tfbs_overrepresentation_for_novel_motifs=0.138811,0.0416895,0.122882,0.96166,0.493134,0.521151,0.240519,0.517797,0.125781,0.0319782,0.208344,1.22048,0.116335,0.249744,0.53362,0,0.405853,0.820545,0.249696,0.215699,1.12967,1.15345,0.249061,0.225711,0.127411,0.270807,0.0214696,0.190063,1.016,0.316933,0.18034,0.493846,0.0591615,0.0770111,0.0716204,0.0355512,0.44687,0.228897,0.175967,0.332849,1.26448,0.183887,0.551639,3.82983,0.165871,0.158598,0.339166,0.201138,0.162034,0.0870988,0.39102,0.291819,0.0109908,0.621761,0.63782,0.255168,0.634897,0.222181,0.216792,0.253617,0.476165,0.299289,0.138322,0.381514,0.26368,0.41591,0.765078,1.10104,1.18963,0.958179,0.111851,0.0296015,1.2193,0.66884,0.0177244,0.18496,0.384191,0.329879,1.1661,0.104109,0.293881,0.420719,0.298144,0.109746,0.563042,0.0333195,0.000497696,0.813009,2.46202,1.25993,0.831175,0.56755,0.505205,0.0663617,1.06361,0.348321,0.113637,0.507703,0.339375,0.449276,0.447055,0.493598,0.605777,0.391523,0.390631,0.183584,0.44182,0.198293,0.346967,0.336134,0.418563,0.607409,1.14987,0.608615,0.837889,0.061076,0.0575166,0.168461,0.406964,1.64345,0.673855,0.363969,0.272218,0.329142,0.889642,0.464341,1.27746,0.499188,0.763646,0.239481,0.590261,0.161127,0.735806,0.265613,0.858504,0.0548429,0.870273,0.5435,0.811653,1.62404,1.22863,0.769526,0.769996,0.50313,0.385159,0.184199,0.341725,1.58469,0.446755,0.0644667,0.0608166,0.546184,0.623204,0.361359,1.34549,0.698893,0.292614,0.0771958,0.137279,0.143914,0.820693,0.562267,0.464731,0.415022,0.382373,0.259222,0.444245,0.230394,0.0604461
}}

Latest revision as of 15:12, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:7655856..7655860,-p@chr10:7655856..7655860
-
Mm9::chr10:7675861..7675945,-p2@Tab2
Mm9::chr17:87230769..87230778,+p@chr17:87230769..87230778
+
Mm9::chr19:5799845..5799856,-p@chr19:5799845..5799856
-
Mm9::chr19:5799896..5799912,-p@chr19:5799896..5799912
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Mm9::chr19:5799913..5799924,-p@chr19:5799913..5799924
-
Mm9::chr19:5799957..5799968,-p@chr19:5799957..5799968
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Mm9::chr19:5800285..5800288,-p@chr19:5800285..5800288
-
Mm9::chr19:5800290..5800301,-p@chr19:5800290..5800301
-
Mm9::chr19:5800875..5800884,-p@chr19:5800875..5800884
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Mm9::chr19:5801340..5801347,-p@chr19:5801340..5801347
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Mm9::chr19:5801348..5801349,-p@chr19:5801348..5801349
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Mm9::chr19:5801353..5801365,-p@chr19:5801353..5801365
-
Mm9::chr19:5801476..5801531,-p@chr19:5801476..5801531
-
Mm9::chr1:84144943..84144947,-p@chr1:84144943..84144947
-
Mm9::chr3:21977688..21977692,+p@chr3:21977688..21977692
+
Mm9::chr4:41082532..41082560,+p1@Ube2r2
Mm9::chr8:109706999..109707003,+p@chr8:109706999..109707003
+
Mm9::chr9:80134138..80134155,+p7@Myo6
Mm9::chrX:106345485..106345489,+p@chrX:106345485..106345489
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
multi-cellular organism1.52e-08333


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00202058
MA0004.10.166273
MA0006.10.0693118
MA0007.10.156418
MA0009.10.517357
MA0014.10.107844
MA0017.10.0822314
MA0019.10.359884
MA0024.10.47854
MA0025.10.731571
MA0027.12.12059
MA0028.10.0742616
MA0029.12.02603
MA0030.10.465221
MA0031.10.434261
MA0038.10.270746
MA0040.12.2551
MA0041.10.378274
MA0042.10.11115
MA0043.10.604858
MA0046.10.549602
MA0048.10.00888801
MA0050.10.19271
MA0051.10.277682
MA0052.10.535783
MA0055.10.796331
MA0056.10
MA0057.11.23997
MA0058.10.107291
MA0059.10.366652
MA0060.10.0366148
MA0061.10.0476315
MA0063.10
MA0066.12.05837
MA0067.10.836675
MA0068.15.90118
MA0069.10.536088
MA0070.13.31443
MA0071.10.192126
MA0072.10.519805
MA0073.18.20911
MA0074.10.235223
MA0076.10.0921124
MA0077.10.500504
MA0078.10.303693
MA0081.10.402057
MA0083.10.604132
MA0084.11.15371
MA0087.10.564877
MA0088.10.257644
MA0089.10
MA0090.10.144081
MA0091.10.519739
MA0092.10.14428
MA0093.10.0783063
MA0095.10
MA0098.10
MA0100.10.226682
MA0101.10.119531
MA0103.10.0877522
MA0105.10.0158657
MA0106.13.18027
MA0107.10.286884
MA0108.20.378962
MA0109.10
MA0111.10.153116
MA0113.10.287528
MA0114.10.177066
MA0115.10.60742
MA0116.10.0692153
MA0117.10.577975
MA0119.10.119877
MA0122.10.596061
MA0124.10.786128
MA0125.10.716372
MA0130.10
MA0131.10.356119
MA0132.10
MA0133.10
MA0135.10.638323
MA0136.10.697748
MA0139.10.112213
MA0140.10.642909
MA0141.10.323987
MA0142.10.421761
MA0143.10.300449
MA0144.10.0479235
MA0145.10.00374848
MA0146.10.00528685
MA0147.10.195777
MA0148.11.0074
MA0149.12.49277
MA0062.20.0170313
MA0035.20.651023
MA0039.20.898402
MA0138.20.349554
MA0002.20.277315
MA0137.20.0966473
MA0104.20.129899
MA0047.20.743872
MA0112.20.0688922
MA0065.20.694713
MA0150.10.156344
MA0151.10
MA0152.11.36519
MA0153.10.653688
MA0154.10.256358
MA0155.10.0861945
MA0156.10.634341
MA0157.10.394402
MA0158.10
MA0159.10.795383
MA0160.11.01566
MA0161.10
MA0162.10.307094
MA0163.10.0198187
MA0164.10.250399
MA0080.20.288132
MA0018.20.257759
MA0099.20.344363
MA0079.21.53235
MA0102.21.20505
MA0258.10.0416225
MA0259.10.182669
MA0442.10
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