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MCL coexpression mm9:745: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.0129027425573152,0,0,0,0,0.00673979504369913,0.00911788108631387,0,0.00572052190895671,0.00913378685245542,0,0,0,0,0,0,0,0,0,0,0.285508173657078,0,0,0.00644551523736777,0,0,0,0,0,0,0,0,0,0,0,0.00667859388724756,0.00806875710728457,0,0,0,0,0,0,0,0,0,0,0.0389867836974119,0.00862481039219708,0,0.00568996784870888,0,0,0,0,0,0,0,0.661333385022294,0.70278891091011,0.613653144683152,0,0,0,0,0,0.0113809739605487,0.0495178994412594,0.264072930951603,0.348210610249825,0.230123738584583,0.657151206720268,0.594150714357144,0.977381157550463,0.988024481924143,1.06496022116589,0.972960922305608,0.833459979609334,0.886103070415121,0.664502631561409,0.616592187701902,0.644098910482519,0.836949847369729,0.599870601602167,0.74022618251932,0.71637655583064,0.653192248320208,0.498537636993798,0,0.0253910851217432,0,0,0,0,0,0,0.0769957401621243,0.00683455646190839,0,0,0.00572260417947564,0,0,0,0,0,0,0.0703726655624047,0,0,0.00694776635602275,0.0552835178747301,0.00901223798974778,0,0.019312801890472,0,0,0,0,0,0,0,0,0.596920544506521,0.54892379971987,0.0098801861608942,0,0,0,0.898015127509134,0.888148700743137,0.849992490265258,0.636929214116386,0.575824839031276,0.945309969130911,0.856275707826054,0,0,0,0.0978181070658967,0.0503409003616629,0.175189723908063,0.296752940333209,0.282086813729043,0.438362357820722,0.463574358908354,0.368481297474776,0.208589154175958,0,0.0289757277018176,0,0,0,0,0,0,0,0,0,0.00817525223528981,0,0,0,0.00780086007519514,0.00623063220167371,0,0.0103212884397651,0,0,0,0,0,0,0,0.607437151482573,0.367889962057182,0,0,0.0154295065934854,0.00906941294286938,0.00526429550379996,0,0.00872055405749939,0.00756292965920817,0,0,0,0.0145480126286698,0,0,0.00849828766602549,0,0.0139670008859883,0.00893741091821246,0.0327783284444535,0.0161001398555976,0,0,0.00266298923127834,0.00597943799295356,0,0,0,0,0,0,0,0,0,0,0,0,0.0386977062110387,0,0,0,0,0,0,0.00753613107413788,0.00655666358230307,0,0,0,0,0.00774164737207147,0.0212331610807172,0.0086880916817156,0,0,0,0,0,0,0,0,0.687153493680794,0.689904331101562,0,0,0.0119093565942036,0.0250634044192069,0.00847275925579778,0,0.00873549591356574,0,0,0,0.0144663790035931,0.926930956758491,0.00576433181427177,0,0,0,0,0,0.0114718896326828,0,0,0,0,0,0,0,0,0,0.229631921336096,0.0724436211957089,0.0364087702332583,0.0253017721189625,0.0141803971125952,0.0142562483075577,0.0388188115853101,0.0632665828866804,0,0,0.00865478886078475,0,0,0,0,0.0132011095126881,0,0.549008767750421,0,0,0,0,0,0,0.0195268671507792,0.0209130154678466,0.0112437142554111,0,0,0,0,0,0,0,0,0,0.00529304404135566,0,0,0.0174135441453425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00417740847988257,0,0,0,0,0.00480053095083702,0.00887491219977394,0,0,0,0.00767094571656325,0,0,0.00843504501108034,0.538068007082671,0.607575330144605,0.613927277884486,0.550045412834552,0.636219458905075,0.590347949560898,0.494363398935699,0.519333478255422,0.497629594469357,0.571517782795578,0.479169196781513,0.11034477237818,0.445853151420633,0.285442872478238,0.216815443766218,0.199707653353598,0.186516785288578,0.184984279301669,0.148219240958058,0.164867707261444,0.205061311880411,0.215009502629956,0.23515184436297,0.19169633927641,0.193708946262213,0.190732437895614,0.220584358790862,0.15440039267497,0.166877368500046,0.133974938076494,0.184309257634988,0.186635803490415,0.141796388270543,0.181543743963436,0.203272443694454,0.169111907133881,0.160537289240676,0.199601423929789,0.131853625407644,0.138486580032582,0.228475666654512,0.185560534842423,0.153273922547995,0.218079998943924,0.170388534088961,0.108139958831341,0.329280496986231,0.170731518928063,0.102632534687553,0.0425018140964359,0.0639002046351827,0.0256026772550057|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166466236071921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.634339780256505,0.797103062795977,0.677696596241453,0,0,0,0,0,0,0,0.262336425234178,0.287880188963448,0.182467172639331,0.613056384189865,0.450850026938203,0.942743410581306,0.94839735381235,1.08028820570933,0.991636709896498,0.762187649699817,0.819601089408052,0.675440897275688,0.600039056831475,0.622020989978248,0.751013399215377,0.611246920618536,0.732124203434233,0.636083473760439,0.589593062720913,0.395188702347797,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542273061388985,0.490585865214793,0,0,0,0,0.902534306542187,0.850310818858197,0.704554400487538,0.593339721012825,0.496789837268513,0.830409978967502,0.75753839522983,0,0,0,0.0829439327499637,0.0531247310291112,0.127082578037581,0.298482882288558,0.261815445031034,0.378161623824144,0.403828597834417,0.387596769901614,0.140512702207538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585834766300382,0.232482040936766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685791686074671,0.55278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acid:hydrogen symporter activity;0.00380347162330313;22348!GO:0004351;glutamate decarboxylase activity;0.00380347162330313;14417!GO:0031410;cytoplasmic vesicle;0.00380347162330313;22348,14417!GO:0031982;vesicle;0.00380347162330313;22348,14417!GO:0015816;glycine transport;0.00380347162330313;22348!GO:0015187;glycine transmembrane transporter activity;0.00380347162330313;22348!GO:0005280;hydrogen:amino acid symporter activity;0.00380347162330313;22348!GO:0015295;solute:hydrogen symporter activity;0.00394423288447031;22348!GO:0015185;L-gamma-aminobutyric acid transmembrane transporter activity;0.00394423288447031;22348!GO:0015804;neutral amino acid transport;0.005324422636856;22348!GO:0005416;cation:amino acid symporter activity;0.00665498125135951;22348!GO:0015175;neutral amino acid transmembrane transporter activity;0.00665498125135951;22348!GO:0042136;neurotransmitter biosynthetic process;0.00887233581121626;14417!GO:0015179;L-amino acid transmembrane transporter activity;0.0145719859665723;22348!GO:0016831;carboxy-lyase activity;0.0153732368546372;14417!GO:0005275;amine transmembrane transporter activity;0.0177208447861533;22348!GO:0015171;amino acid transmembrane transporter activity;0.0177208447861533;22348!GO:0042133;neurotransmitter metabolic process;0.0177208447861533;14417!GO:0016830;carbon-carbon lyase activity;0.0177208447861533;14417!GO:0015370;solute:sodium symporter activity;0.0177208447861533;22348!GO:0006865;amino acid transport;0.0177208447861533;22348!GO:0030170;pyridoxal phosphate binding;0.0177208447861533;14417!GO:0006836;neurotransmitter transport;0.0177208447861533;22348!GO:0015294;solute:cation symporter activity;0.0177208447861533;22348!GO:0015837;amine transport;0.0177208447861533;22348!GO:0046943;carboxylic acid transmembrane transporter activity;0.0177208447861533;22348!GO:0005342;organic acid transmembrane transporter activity;0.0177208447861533;22348!GO:0044459;plasma membrane part;0.0177208447861533;22348,14417!GO:0046942;carboxylic acid transport;0.0177208447861533;22348!GO:0015849;organic acid transport;0.0177208447861533;22348!GO:0030424;axon;0.0177208447861533;14417!GO:0001505;regulation of neurotransmitter levels;0.0243487777157163;14417!GO:0005886;plasma membrane;0.0263596127669051;22348,14417!GO:0019842;vitamin binding;0.0273307827908039;14417!GO:0043005;neuron projection;0.0293224578606538;14417!GO:0015293;symporter activity;0.0326705636781114;22348!GO:0016829;lyase activity;0.0363096803218342;14417!GO:0048037;cofactor binding;0.0390584548816205;14417!GO:0015291;secondary active transmembrane transporter activity;0.0398604143884566;22348!GO:0007268;synaptic transmission;0.0419391827297904;14417!GO:0019226;transmission of nerve impulse;0.0484067856014937;14417!|ontology_enrichment_celltype=CL:0000117!1.23e-22!23;CL:0000337!1.23e-22!23;CL:0000540!4.40e-13!33;CL:0000047!4.40e-13!33;CL:0000031!4.40e-13!33;CL:0000404!4.40e-13!33;CL:0000393!8.19e-10!39;CL:0000211!8.19e-10!39;CL:0002319!3.49e-08!43;CL:0000221!7.90e-08!44;CL:0000133!7.90e-08!44|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0002346!1.98e-33!64;UBERON:0003075!1.98e-33!64;UBERON:0007284!1.98e-33!64;UBERON:0000073!8.30e-33!54;UBERON:0001049!3.60e-30!52;UBERON:0005068!3.60e-30!52;UBERON:0006241!3.60e-30!52;UBERON:0007135!3.60e-30!52;UBERON:0003056!1.41e-28!49;UBERON:0001017!3.82e-27!73;UBERON:0010371!5.52e-27!73;UBERON:0002020!6.29e-27!34;UBERON:0000955!5.21e-26!47;UBERON:0006238!5.21e-26!47;UBERON:0001016!6.34e-26!75;UBERON:0004121!1.20e-25!95;UBERON:0000924!1.20e-25!95;UBERON:0006601!1.20e-25!95;UBERON:0002616!6.59e-25!46;UBERON:0003080!4.10e-23!40;UBERON:0003528!1.74e-22!29;UBERON:0002791!1.74e-22!29;UBERON:0001893!1.74e-22!29;UBERON:0002780!4.92e-22!39;UBERON:0001890!4.92e-22!39;UBERON:0006240!4.92e-22!39;UBERON:0010314!1.14e-17!92;UBERON:0000956!1.27e-14!21;UBERON:0001869!1.27e-14!21;UBERON:0000203!1.27e-14!21;UBERON:0002619!6.59e-12!17;UBERON:0002021!1.83e-09!10;UBERON:0000411!1.83e-09!10;UBERON:0001950!1.83e-09!10;UBERON:0002420!3.52e-09!8;UBERON:0007245!3.52e-09!8;UBERON:0010009!3.52e-09!8;UBERON:0010011!3.52e-09!8;UBERON:0000454!3.52e-09!8;UBERON:0003076!1.98e-07!12;UBERON:0003057!1.98e-07!12|tfbs_overrepresentation_for_novel_motifs=0.860199,0.352573,0.297937,0.360062,0.200163,0.373426,2.02295,0.124431,2.58341,0.0244487,1.071,0.447169,0.124608,0.470194,0.214197,0,0.656089,0.19356,1.209,1.67987,0.26524,0.0365724,0.469335,0.198877,0.304728,0.496413,0.107695,0.392919,0.238759,0.967915,2.63748,0.754912,0.191698,0.0942651,0.214608,0.0351598,0.184038,0.443753,0.166348,3.46075,0.196807,0.38461,0.890234,0.215898,0.0422997,0.923221,0.578773,0.407653,0.479635,0.241306,1.54311,0.522137,0.259389,0.894161,0.911367,0.47699,0.249055,0.435119,1.12723,0.47505,0.735292,0.531188,0.140453,0.628155,0.487593,0.667546,1.04613,1.3932,0.730718,1.24673,0.281085,0.128829,0.155003,0.944464,0.320434,0.623453,1.07748,0.567793,0.718494,0.268962,1.90268,0.673009,0.529804,0.119727,0.830765,0.0122854,0.357945,0.96859,0.583509,1.55487,1.11522,0.835661,0.767462,1.75421,0.163126,2.76183,0.777003,0.770215,0.57902,0.0659594,0.184103,0.754637,0.87698,0.639679,0.638654,1.77029,5.4054,0.403887,2.94393,0.266818,0.315128,0.878738,1.36417,0.421988,1.12221,1.07996,0.671121,0.363536,0.657356,0.181004,0.949798,0.607824,0.498153,0.566919,1.17594,2.87803,0.466292,1.79596,2.37681,0.59809,0.86025,0.353344,1.01535,0.48999,1.14365,0.0358067,0.329172,0.385921,2.47881,1.92247,1.5231,1.0508,0.509663,0.765172,0.632358,0.385031,0.581788,1.88287,0.331322,1.10485,0.0806411,0.0316649,0.895708,1.46114,0.489108,0.976367,0.523103,0.637798,0.319291,0.328917,1.1043,0.829923,0.722546,0.313083,0.629147,0.482049,0.53929,0.445669,0.0896551|tfbs_overrepresentation_jaspar=MA0003.1;0.347165,MA0004.1;1.68813,MA0006.1;0.604851,MA0007.1;0.346734,MA0009.1;0.780842,MA0014.1;0.342463,MA0017.1;0.233089,MA0019.1;0.603066,MA0024.1;0.737933,MA0025.1;1.01089,MA0027.1;2.42079,MA0028.1;1.17347,MA0029.1;0.716673,MA0030.1;0.723093,MA0031.1;0.688336,MA0038.1;0.496338,MA0040.1;0.79313,MA0041.1;0.291712,MA0042.1;2.98799,MA0043.1;0.875991,MA0046.1;0.816137,MA0048.1;0.509074,MA0050.1;0.396459,MA0051.1;0.504875,MA0052.1;0.801048,MA0055.1;0.344,MA0056.1;0,MA0057.1;0.059732,MA0058.1;0.752621,MA0059.1;0.777514,MA0060.1;0.8754,MA0061.1;0.16896,MA0063.1;0,MA0066.1;0.485868,MA0067.1;1.12095,MA0068.1;0.22316,MA0069.1;0.801381,MA0070.1;0.791856,MA0071.1;0.395679,MA0072.1;0.783532,MA0073.1;0.00409435,MA0074.1;4.03915,MA0076.1;0.249619,MA0077.1;0.762273,MA0078.1;0.536502,MA0081.1;0.305576,MA0083.1;0.875209,MA0084.1;1.44691,MA0087.1;0.832758,MA0088.1;0.0379749,MA0089.1;0,MA0090.1;0.877277,MA0091.1;0.372635,MA0092.1;0.329444,MA0093.1;1.86949,MA0095.1;0,MA0098.1;0,MA0100.1;0.440912,MA0101.1;0.292867,MA0103.1;0.242398,MA0105.1;0.304995,MA0106.1;0.543967,MA0107.1;0.237082,MA0108.2;0.625209,MA0109.1;0,MA0111.1;0.342068,MA0113.1;0.516916,MA0114.1;0.167085,MA0115.1;0.878749,MA0116.1;0.604438,MA0117.1;0.846964,MA0119.1;0.293392,MA0122.1;0.866511,MA0124.1;1.06819,MA0125.1;0.994853,MA0130.1;0,MA0131.1;0.598671,MA0132.1;0,MA0133.1;0,MA0135.1;0.911905,MA0136.1;0.470672,MA0139.1;0.121562,MA0140.1;0.440804,MA0141.1;0.719522,MA0142.1;0.674191,MA0143.1;0.53259,MA0144.1;0.169559,MA0145.1;0.042251,MA0146.1;0.00739145,MA0147.1;0.179496,MA0148.1;0.375491,MA0149.1;0.806798,MA0062.2;0.0948004,MA0035.2;0.44524,MA0039.2;0.00879115,MA0138.2;8.94555,MA0002.2;3.98342,MA0137.2;0.257017,MA0104.2;0.134457,MA0047.2;0.495607,MA0112.2;8.26817,MA0065.2;0.0424448,MA0150.1;1.63957,MA0151.1;0,MA0152.1;0.495709,MA0153.1;0.92832,MA0154.1;2.38009,MA0155.1;0.416651,MA0156.1;0.248865,MA0157.1;0.642984,MA0158.1;0,MA0159.1;1.6576,MA0160.1;0.378276,MA0161.1;0,MA0162.1;1.0367,MA0163.1;0.00834216,MA0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|gostat_on_MCL_coexpression=GO:0015495;gamma-aminobutyric acid:hydrogen symporter activity;0.00380347162330313;22348!GO:0004351;glutamate decarboxylase activity;0.00380347162330313;14417!GO:0031410;cytoplasmic vesicle;0.00380347162330313;22348,14417!GO:0031982;vesicle;0.00380347162330313;22348,14417!GO:0015816;glycine transport;0.00380347162330313;22348!GO:0015187;glycine transmembrane transporter activity;0.00380347162330313;22348!GO:0005280;hydrogen:amino acid symporter activity;0.00380347162330313;22348!GO:0015295;solute:hydrogen symporter activity;0.00394423288447031;22348!GO:0015185;L-gamma-aminobutyric acid transmembrane transporter activity;0.00394423288447031;22348!GO:0015804;neutral amino acid transport;0.005324422636856;22348!GO:0005416;cation:amino acid symporter activity;0.00665498125135951;22348!GO:0015175;neutral amino acid transmembrane transporter activity;0.00665498125135951;22348!GO:0042136;neurotransmitter biosynthetic process;0.00887233581121626;14417!GO:0015179;L-amino acid transmembrane transporter activity;0.0145719859665723;22348!GO:0016831;carboxy-lyase activity;0.0153732368546372;14417!GO:0005275;amine transmembrane transporter activity;0.0177208447861533;22348!GO:0015171;amino acid transmembrane transporter activity;0.0177208447861533;22348!GO:0042133;neurotransmitter metabolic process;0.0177208447861533;14417!GO:0016830;carbon-carbon lyase activity;0.0177208447861533;14417!GO:0015370;solute:sodium symporter activity;0.0177208447861533;22348!GO:0006865;amino acid transport;0.0177208447861533;22348!GO:0030170;pyridoxal phosphate binding;0.0177208447861533;14417!GO:0006836;neurotransmitter transport;0.0177208447861533;22348!GO:0015294;solute:cation symporter activity;0.0177208447861533;22348!GO:0015837;amine transport;0.0177208447861533;22348!GO:0046943;carboxylic acid transmembrane transporter activity;0.0177208447861533;22348!GO:0005342;organic acid transmembrane transporter activity;0.0177208447861533;22348!GO:0044459;plasma membrane part;0.0177208447861533;22348,14417!GO:0046942;carboxylic acid transport;0.0177208447861533;22348!GO:0015849;organic acid transport;0.0177208447861533;22348!GO:0030424;axon;0.0177208447861533;14417!GO:0001505;regulation of neurotransmitter levels;0.0243487777157163;14417!GO:0005886;plasma membrane;0.0263596127669051;22348,14417!GO:0019842;vitamin binding;0.0273307827908039;14417!GO:0043005;neuron projection;0.0293224578606538;14417!GO:0015293;symporter activity;0.0326705636781114;22348!GO:0016829;lyase activity;0.0363096803218342;14417!GO:0048037;cofactor binding;0.0390584548816205;14417!GO:0015291;secondary active transmembrane transporter activity;0.0398604143884566;22348!GO:0007268;synaptic transmission;0.0419391827297904;14417!GO:0019226;transmission of nerve impulse;0.0484067856014937;14417!
|ontology_enrichment_celltype=CL:0000117!1.23e-22!23;CL:0000337!1.23e-22!23;CL:0000540!4.40e-13!33;CL:0000047!4.40e-13!33;CL:0000031!4.40e-13!33;CL:0000404!4.40e-13!33;CL:0000393!8.19e-10!39;CL:0000211!8.19e-10!39;CL:0002319!3.49e-08!43;CL:0000221!7.90e-08!44;CL:0000133!7.90e-08!44
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!1.98e-33!64;UBERON:0003075!1.98e-33!64;UBERON:0007284!1.98e-33!64;UBERON:0000073!8.30e-33!54;UBERON:0001049!3.60e-30!52;UBERON:0005068!3.60e-30!52;UBERON:0006241!3.60e-30!52;UBERON:0007135!3.60e-30!52;UBERON:0003056!1.41e-28!49;UBERON:0001017!3.82e-27!73;UBERON:0010371!5.52e-27!73;UBERON:0002020!6.29e-27!34;UBERON:0000955!5.21e-26!47;UBERON:0006238!5.21e-26!47;UBERON:0001016!6.34e-26!75;UBERON:0004121!1.20e-25!95;UBERON:0000924!1.20e-25!95;UBERON:0006601!1.20e-25!95;UBERON:0002616!6.59e-25!46;UBERON:0003080!4.10e-23!40;UBERON:0003528!1.74e-22!29;UBERON:0002791!1.74e-22!29;UBERON:0001893!1.74e-22!29;UBERON:0002780!4.92e-22!39;UBERON:0001890!4.92e-22!39;UBERON:0006240!4.92e-22!39;UBERON:0010314!1.14e-17!92;UBERON:0000956!1.27e-14!21;UBERON:0001869!1.27e-14!21;UBERON:0000203!1.27e-14!21;UBERON:0002619!6.59e-12!17;UBERON:0002021!1.83e-09!10;UBERON:0000411!1.83e-09!10;UBERON:0001950!1.83e-09!10;UBERON:0002420!3.52e-09!8;UBERON:0007245!3.52e-09!8;UBERON:0010009!3.52e-09!8;UBERON:0010011!3.52e-09!8;UBERON:0000454!3.52e-09!8;UBERON:0003076!1.98e-07!12;UBERON:0003057!1.98e-07!12
}}

Latest revision as of 15:49, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr2:158436467..158436523,+p2@Slc32a1
Mm9::chr2:22477648..22477664,+p8@Gad2
Mm9::chr2:22477703..22477720,+p12@Gad2
Mm9::chr2:22477797..22477823,+p2@Gad2
Mm9::chr2:22477867..22477886,+p6@Gad2
Mm9::chr2:22477904..22477917,+p14@Gad2
Mm9::chr2:22477939..22477950,+p13@Gad2
Mm9::chr2:22477966..22477981,+p7@Gad2
Mm9::chr2:22477994..22478007,+p4@Gad2
Mm9::chr6:138370756..138370767,+p@chr6:138370756..138370767
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0015495gamma-aminobutyric acid:hydrogen symporter activity0.00380347162330313
GO:0004351glutamate decarboxylase activity0.00380347162330313
GO:0031410cytoplasmic vesicle0.00380347162330313
GO:0031982vesicle0.00380347162330313
GO:0015816glycine transport0.00380347162330313
GO:0015187glycine transmembrane transporter activity0.00380347162330313
GO:0005280hydrogen:amino acid symporter activity0.00380347162330313
GO:0015295solute:hydrogen symporter activity0.00394423288447031
GO:0015185L-gamma-aminobutyric acid transmembrane transporter activity0.00394423288447031
GO:0015804neutral amino acid transport0.005324422636856
GO:0005416cation:amino acid symporter activity0.00665498125135951
GO:0015175neutral amino acid transmembrane transporter activity0.00665498125135951
GO:0042136neurotransmitter biosynthetic process0.00887233581121626
GO:0015179L-amino acid transmembrane transporter activity0.0145719859665723
GO:0016831carboxy-lyase activity0.0153732368546372
GO:0005275amine transmembrane transporter activity0.0177208447861533
GO:0015171amino acid transmembrane transporter activity0.0177208447861533
GO:0042133neurotransmitter metabolic process0.0177208447861533
GO:0016830carbon-carbon lyase activity0.0177208447861533
GO:0015370solute:sodium symporter activity0.0177208447861533
GO:0006865amino acid transport0.0177208447861533
GO:0030170pyridoxal phosphate binding0.0177208447861533
GO:0006836neurotransmitter transport0.0177208447861533
GO:0015294solute:cation symporter activity0.0177208447861533
GO:0015837amine transport0.0177208447861533
GO:0046943carboxylic acid transmembrane transporter activity0.0177208447861533
GO:0005342organic acid transmembrane transporter activity0.0177208447861533
GO:0044459plasma membrane part0.0177208447861533
GO:0046942carboxylic acid transport0.0177208447861533
GO:0015849organic acid transport0.0177208447861533
GO:0030424axon0.0177208447861533
GO:0001505regulation of neurotransmitter levels0.0243487777157163
GO:0005886plasma membrane0.0263596127669051
GO:0019842vitamin binding0.0273307827908039
GO:0043005neuron projection0.0293224578606538
GO:0015293symporter activity0.0326705636781114
GO:0016829lyase activity0.0363096803218342
GO:0048037cofactor binding0.0390584548816205
GO:0015291secondary active transmembrane transporter activity0.0398604143884566
GO:0007268synaptic transmission0.0419391827297904
GO:0019226transmission of nerve impulse0.0484067856014937



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.23e-2223
neuroblast (sensu Vertebrata)1.23e-2223
neuron4.40e-1333
neuronal stem cell4.40e-1333
neuroblast4.40e-1333
electrically signaling cell4.40e-1333
electrically responsive cell8.19e-1039
electrically active cell8.19e-1039
neural cell3.49e-0843
ectodermal cell7.90e-0844
neurectodermal cell7.90e-0844

Uber Anatomy
Ontology termp-valuen
neurectoderm1.98e-3364
neural plate1.98e-3364
presumptive neural plate1.98e-3364
regional part of nervous system8.30e-3354
neural tube3.60e-3052
neural rod3.60e-3052
future spinal cord3.60e-3052
neural keel3.60e-3052
pre-chordal neural plate1.41e-2849
central nervous system3.82e-2773
ecto-epithelium5.52e-2773
gray matter6.29e-2734
brain5.21e-2647
future brain5.21e-2647
nervous system6.34e-2675
ectoderm-derived structure1.20e-2595
ectoderm1.20e-2595
presumptive ectoderm1.20e-2595
regional part of brain6.59e-2546
anterior neural tube4.10e-2340
brain grey matter1.74e-2229
regional part of telencephalon1.74e-2229
telencephalon1.74e-2229
regional part of forebrain4.92e-2239
forebrain4.92e-2239
future forebrain4.92e-2239
structure with developmental contribution from neural crest1.14e-1792
cerebral cortex1.27e-1421
cerebral hemisphere1.27e-1421
pallium1.27e-1421
regional part of cerebral cortex6.59e-1217
occipital lobe1.83e-0910
visual cortex1.83e-0910
neocortex1.83e-0910
basal ganglion3.52e-098
nuclear complex of neuraxis3.52e-098
aggregate regional part of brain3.52e-098
collection of basal ganglia3.52e-098
cerebral subcortex3.52e-098
posterior neural tube1.98e-0712
chordal neural plate1.98e-0712


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.347165
MA0004.11.68813
MA0006.10.604851
MA0007.10.346734
MA0009.10.780842
MA0014.10.342463
MA0017.10.233089
MA0019.10.603066
MA0024.10.737933
MA0025.11.01089
MA0027.12.42079
MA0028.11.17347
MA0029.10.716673
MA0030.10.723093
MA0031.10.688336
MA0038.10.496338
MA0040.10.79313
MA0041.10.291712
MA0042.12.98799
MA0043.10.875991
MA0046.10.816137
MA0048.10.509074
MA0050.10.396459
MA0051.10.504875
MA0052.10.801048
MA0055.10.344
MA0056.10
MA0057.10.059732
MA0058.10.752621
MA0059.10.777514
MA0060.10.8754
MA0061.10.16896
MA0063.10
MA0066.10.485868
MA0067.11.12095
MA0068.10.22316
MA0069.10.801381
MA0070.10.791856
MA0071.10.395679
MA0072.10.783532
MA0073.10.00409435
MA0074.14.03915
MA0076.10.249619
MA0077.10.762273
MA0078.10.536502
MA0081.10.305576
MA0083.10.875209
MA0084.11.44691
MA0087.10.832758
MA0088.10.0379749
MA0089.10
MA0090.10.877277
MA0091.10.372635
MA0092.10.329444
MA0093.11.86949
MA0095.10
MA0098.10
MA0100.10.440912
MA0101.10.292867
MA0103.10.242398
MA0105.10.304995
MA0106.10.543967
MA0107.10.237082
MA0108.20.625209
MA0109.10
MA0111.10.342068
MA0113.10.516916
MA0114.10.167085
MA0115.10.878749
MA0116.10.604438
MA0117.10.846964
MA0119.10.293392
MA0122.10.866511
MA0124.11.06819
MA0125.10.994853
MA0130.10
MA0131.10.598671
MA0132.10
MA0133.10
MA0135.10.911905
MA0136.10.470672
MA0139.10.121562
MA0140.10.440804
MA0141.10.719522
MA0142.10.674191
MA0143.10.53259
MA0144.10.169559
MA0145.10.042251
MA0146.10.00739145
MA0147.10.179496
MA0148.10.375491
MA0149.10.806798
MA0062.20.0948004
MA0035.20.44524
MA0039.20.00879115
MA0138.28.94555
MA0002.23.98342
MA0137.20.257017
MA0104.20.134457
MA0047.20.495607
MA0112.28.26817
MA0065.20.0424448
MA0150.11.63957
MA0151.10
MA0152.10.495709
MA0153.10.92832
MA0154.12.38009
MA0155.10.416651
MA0156.10.248865
MA0157.10.642984
MA0158.10
MA0159.11.6576
MA0160.10.378276
MA0161.10
MA0162.11.0367
MA0163.10.00834216
MA0164.11.1874
MA0080.20.237846
MA0018.20.480226
MA0099.20.584892
MA0079.20.0655992
MA0102.21.49914
MA0258.19.26332
MA0259.10.50935
MA0442.10
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