Template:CL: Difference between revisions
From FANTOM5_SSTAR
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== FF samples == | == FF samples == | ||
information : {{#info:<br>It includes FANTOM5 samples that overlay the [http://cellontology.org/ Cell] ontology. | |||
}} | |||
{{#ask:[[ancestors_in_cell_lineage_facet::{{FULLPAGENAME}}]]|[[sample_species::Human (Homo sapiens)]][[name::+]]|?name=|limit=10|format=ul|headers=hide|intro=<b>Human (Homo sapiens)</b>}} | {{#ask:[[ancestors_in_cell_lineage_facet::{{FULLPAGENAME}}]]|[[sample_species::Human (Homo sapiens)]][[name::+]]|?name=|limit=10|format=ul|headers=hide|intro=<b>Human (Homo sapiens)</b>}} | ||
{{#ask:[[ancestors_in_cell_lineage_facet::{{FULLPAGENAME}}]]|[[sample_species::Mouse (Mus musculus)]][[name::+]]|?name=|limit=10|format=ul|headers=hide|intro=<b>Mouse (Mus musculus)</b>}} | {{#ask:[[ancestors_in_cell_lineage_facet::{{FULLPAGENAME}}]]|[[sample_species::Mouse (Mus musculus)]][[name::+]]|?name=|limit=10|format=ul|headers=hide|intro=<b>Mouse (Mus musculus)</b>}} | ||
Revision as of 16:38, 24 September 2013
outline
- id: {{{id}}}
- name: {{{name}}}
- namespace:
- def:
- xref:
- synonym:
- comment:
- alt_id:
- created_by:
- subset:
- creation_date:
- has_quality:
Ontology association
Analysis information : <br>Each cell-type sample class has an is_a parent in the Cell Ontology, which has a linkage to an anatomical entity. The FANTOM5 sample term also has is_a children: these represent the biological replicates.
Parents
| is_a: | [[{{{is_a}}}]]() |
|---|---|
| disjoint_from: | [[{{{disjoint_from}}}]]() |
| union_of: | [[{{{union_of}}}]]() |
| derives_from: | [[{{{derives_from}}}]]() |
| develops_from: | [[{{{develops_from}}}]]() |
| has_quality: | [[{{{has_quality}}}]]() |
| located_in: | [[{{{located_in}}}]]() |
| part_of: | [[{{{part_of}}}]]() |
Children
Ontology Tree: Loaded from BioPortal
FF samples
information : <br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji
"{{{obo_creation_date}}}" contains an extrinsic dash or other characters that are invalid for a date interpretation.
