FFCP PHASE1:Hg19::chr22:39410287..39410302,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27350 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17353 | |||
|TSSclassifier=strong | |||
|UniProt=F8WB92 | |||
|association_with_transcript=20bp_to_ENST00000428892_5end | |||
|coexpression_cluster_id=C254 | |||
|description=CAGE_peak_2_at_APOBEC3C_5end | |||
|id=chr22:39410287..39410302,+ | |||
|ontology_enrichment_celltype=CL:0002371!2.84e-22!591;CL:0000144!7.40e-21!625;CL:0000548!7.68e-19!679;CL:0000004!7.68e-19!679;CL:0000255!7.68e-19!679;CL:0000012!1.92e-18!682;CL:0000003!2.60e-17!722;CL:0000183!1.26e-11!59;CL:0000192!9.76e-11!42;CL:0000514!9.76e-11!42;CL:0000680!9.86e-11!57;CL:0000056!9.86e-11!57;CL:0000355!9.86e-11!57;CL:0000187!1.65e-10!54;CL:0000055!8.04e-10!180;CL:0000723!6.15e-09!436;CL:0000048!1.27e-08!430;CL:0000063!1.56e-08!578;CL:0000034!5.48e-08!444;CL:0000393!1.13e-07!60;CL:0000211!1.13e-07!60;CL:0000359!1.31e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000192;5.35e-08;43!CL:0000359;3.11e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,5.08e-11,43;CL:0000514,5.08e-11,43;CL:0000680,5.18e-11,58;CL:0000056,5.18e-11,58;CL:0000355,5.18e-11,58;CL:0000187,8.66e-11,55;CL:0000723,7.05e-10,433;CL:0000048,1.71e-09,427;CL:0000034,6.84e-09,441;CL:0000393,5.96e-08,61;CL:0000211,5.96e-08,61;CL:0000359,1.24e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;5.35e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.83e-10!82;UBERON:0005256!5.06e-09!143;UBERON:0000914!6.48e-09!83;UBERON:0002329!6.48e-09!83;UBERON:0003077!6.48e-09!83;UBERON:0003059!6.48e-09!83;UBERON:0007282!6.48e-09!83;UBERON:0009618!6.48e-09!83;UBERON:0007285!6.48e-09!83;UBERON:0001134!2.27e-08!61;UBERON:0002036!2.27e-08!61;UBERON:0003082!2.27e-08!61;UBERON:0004290!2.73e-08!70;UBERON:0002385!8.52e-08!63;UBERON:0001015!8.52e-08!63;UBERON:0000383!8.52e-08!63;UBERON:0003104!1.73e-07!238;UBERON:0009142!1.73e-07!238 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.79e-10,83;UBERON:0007503,3.16e-09,78;UBERON:0001134,1.20e-08,62;UBERON:0002036,1.20e-08,62;UBERON:0003082,1.20e-08,62;UBERON:0002329,1.47e-08,71;UBERON:0003059,1.47e-08,71;UBERON:0007282,1.47e-08,71;UBERON:0004290,1.47e-08,71;UBERON:0009618,1.47e-08,71;UBERON:0002385,4.62e-08,64;UBERON:0001015,4.62e-08,64;UBERON:0000383,4.62e-08,64;UBERON:0003077,4.89e-08,72;UBERON:0007285,4.89e-08,72;UBERON:0005256,5.50e-08,122;UBERON:0007524,6.94e-08,73;UBERON:0003104,6.30e-07,160;UBERON:0009142,6.30e-07,160;UBERON:0003102,9.76e-07,99 | |||
|phase1_expression=7.63049192936338,9.20632252731228,11.4173067317737,11.0080628188443,6.25745532198203,3.48935409640147,2.53299878168311,13.8978372153903,4.44015567939725,17.9385773646101,10.4670175195864,8.73765488520689,9.23184423799587,14.4806632963255,9.27912652038164,14.7911532219391,21.6970030088632,24.8305430731707,28.7880351286399,14.8976480272913,18.9720642857155,4.07491137921514,5.43848375549008,4.24310717725941,2.63639543149086,46.2301104775105,52.1338743007156,47.9348658200307,14.9478425202584,14.2016877295969,8.82451902901633,15.6301608161418,10.5422071572388,26.2525347218419,30.057273825157,3.69640004467296,4.11040615068786,3.87796785972314,2.60707781711184,4.55722828503289,2.23915474239924,2.59114932815184,1.54545340580512,3.05336301437086,1.51150377475524,1.94067248950253,3.71886459049095,1.23350366406548,2.16794459626573,3.74000110018796,1.7931249457037,2.12834006899727,1.03423704220986,0,1.35426486594342,1.69418105588344,1.36453075028923,2.69668181334102,4.28517449319264,2.88836124368484,1.27867425159808,2.96866170168044,1.99463657621632,2.98357325372886,3.48251086354301,3.97169657283798,1.86846674698672,3.51748131359441,1.5644487552606,3.04064382587163,1.21079900526674,1.84138817993782,1.58231193720442,18.3792099091389,12.7562579979026,10.4829322754188,4.26848798356681,2.10247649978109,5.46466994770072,9.9754460309437,14.1230840811354,23.929004143167,21.1195493353587,13.1073266702912,14.2321480618169,8.53460445133014,12.0118796110804,14.9435634388166,17.1871666924064,13.3567525634951,8.53819453664173,9.39579502993502,7.64546456250458,0,5.04457706683382,7.63813845847723,1.37696839079683,2.75107533924415,1.64481199199607,24.2420418316483,0.32592226663359,0,0,35.8741671170259,5.30290633454707,6.20294904834139,12.9985854607207,27.7958163804715,25.4916321217361,21.8702413122889,20.1735512983669,28.1108993163001,0.889719378972363,0,0,26.6276955339281,5.74830740402882,6.8725489096526,14.6751421371312,8.28270077242652,12.370585623272,7.60361635558699,14.4552114314662,20.2218845623981,19.9889162483753,19.6525119196534,17.243687935342,12.4996180799334,12.0348088102578,6.08262496307756,29.2568239576754,24.8159318090345,6.64885321586358,9.39741796199872,6.51739283826656,8.98048417557107,5.5670016293577,2.91980922181582,17.4889411753526,11.9733874629785,15.0197483535246,24.0346603538303,73.223352946801,32.2582465222454,3.8945687238562,3.65672448328461,3.98873881556595,0.476981248610684,1.14398982156026,0,10.9319324051688,5.16140757063675,9.71993404501264,3.95715559346807,19.7164735018656,1.6507082516404,7.10582886225156,3.10100111003195,3.91342888955381,1.33888245105868,5.23678112241891,4.56163263431108,2.19655851793353,4.77962004449629,2.43042584364528,7.32257771929454,4.93964619777574,4.39184773884957,7.66583187329416,6.6448596169769,2.74802615895611,5.27121669744253,3.87780264148325,40.9928409013982,3.47880366186723,12.0298986081351,23.9660617271926,17.4970338656776,13.4773985235376,5.60677600142307,8.5399196583764,6.166688710429,16.1829738407878,4.58016285036939,6.37501422142489,12.1085942115945,1.15235184896,19.4486788422051,7.49184184392769,9.69802096625564,9.71416423586707,6.57633192405083,3.0755859429945,4.21352420106745,19.19049209796,8.10706494257669,14.8789124893102,13.0680314301026,6.42894016124248,163.829045148845,104.199630563355,6.90178067211671,11.6360223480927,19.671552199377,16.6811495934718,6.74273150757843,6.30999847407706,10.3223286675619,13.4542226766646,8.5422955527427,6.78182083710598,13.8041904198825,14.2212490349046,15.2007918626921,18.9839193458222,10.9704615956823,6.9180273664451,16.4081953258674,9.38908966151453,18.5892965341634,13.1353549231147,16.2210878146501,15.7691350848753,21.4519547011259,32.4567883503093,41.8734709267946,1.82960559194393,1.45782745153634,3.137236457477,4.87206958572241,2.77552935963191,3.28479623168247,18.7739438795779,13.5080597020506,26.2456350569713,25.0758681137269,57.0284790518973,11.8306800039844,15.5097914871854,14.9426838527759,8.93381179132391,13.5085255337292,13.0498840511103,11.3258298854538,14.716609884401,14.6203919639628,19.1920418202409,11.2193419042757,30.4564768385236,17.641045366265,0,1.96565443335525,3.54473944008842,0,4.91953754172454,23.3332222005995,42.3636101677295,37.0925785750145,10.7566000480445,40.3685620891189,10.7516740752407,25.9983696319895,24.5363281442965,11.0133884726323,28.4129040050688,3.75352764178792,1.38895653772983,2.28304982681518,0.790204397959275,0,5.17055712783534,7.02012795417713,5.49935300468294,13.1227367581488,38.4679073575388,56.0011634107427,66.2733068001077,85.7370118616188,72.8427090413901,32.0231104632363,14.7040884802087,3.7319060797339,3.45887888200707,3.28230326908588,6.22279364063257,31.705039321337,9.37739577680376,15.3965201420435,3.80461723002297,10.812350082381,16.5779330925735,27.5842467489587,19.1822430286643,22.9548834619574,12.79789986002,78.6844180874141,14.370146793452,21.8069255599594,24.9617848587279,45.7829126186613,9.92943924162948,29.3064396917709,9.57952557509589,23.3327290318321,43.6317378493807,6.84045987016844,9.95097456479128,7.12756685640086,43.70870967364,33.9898048854115,28.8921944516145,3.64871341923571,1.50677127429638,4.21667878966063,7.42837052023906,4.59447743336456,1.42636905040718,13.0303176000821,13.3559609657749,11.4599016473533,22.4170287987055,21.673383622212,11.2126338926949,12.7059605916951,2.03275699377971,0,0,0.670065061337395,0,2.24702107184155,5.9832291840805,1.24324654030811,6.37995756939527,19.5066503213274,8.68048075839154,6.86303843051664,6.24501460790066,8.2005255817646,5.62278791965023,15.9501432855691,18.1926003244788,6.2083842775503,10.627609576567,10.8777809439605,37.4468378357437,22.9087354231406,7.20601190002797,10.958705384513,4.52999821719095,9.3920250867031,7.57818928615649,18.3078983461547,12.3980020265169,6.4508030032882,6.75232682467475,3.64858122762996,15.8892545077069,8.18731598506726,5.79074116116987,8.90508398669946,12.6451948918178,17.2234873553733,25.8700541443499,23.366449313263,18.8260813105134,3.38406458856542,55.3397858037066,23.0202472339741,21.3554873586169,17.8449344646583,27.9295003863573,12.1823895485001,6.70033432808408,22.7461433061288,24.8436681910543,6.75530424914404,5.68666920354483,10.885997137697,11.4435435534134,7.71136263451447,44.164269319648,31.6064557528558,6.37190682612596,4.98645605357235,13.8802347927751,19.95264877478,14.3789498063695,8.71930425395723,3.93617574839647,3.25378394664303,2.06082023295445,5.76887628355563,5.94068399428233,74.6545199395024,50.0546389448121,16.068392984416,8.50702320970673,9.55101426110795,8.44270210993712,6.89182862422653,23.3101931364154,15.3717695549082,8.43743611419399,8.01288320820636,17.0243462821807,10.7626437724459,13.5269475244259,10.5204092089772,21.3828952676751,12.9073062200562,18.1229690241756,28.0310557960241,28.7445256371192,24.358123778102,10.5634804889234,4.72312126248571,14.8863347743867,14.2370741123427,13.9160041564392,48.8764781404648,17.5454985093907,28.9564955612602,3.92474320099615,14.5696690642485,16.1976847544272,20.1459208011124,30.731737199144,20.6063417524911,14.7440459683643,26.8198556499275,43.1372876647373,16.9040234810809,25.3889835218854,21.7764365208718,15.821136326834,15.9895949628376,16.5859743810305,11.3997230165978,102.443269565204,13.1178950409327,16.8415612879044,9.914351939192,14.0847801266121,24.5233412268928,9.62840601928587,18.1902236255438,16.6737700113181,6.12212142363226,11.1960263606367,22.7683904259429,21.346017934944,26.4610809995158,22.119975092681,16.3336477291984,1.31801321087491,58.118225310616,30.3248656201726,27.9360996728106,17.9184252161428,16.2383234954294,16.0573813499899,10.2536493691349,11.1968934465161,16.865853196534,10.3755729790835,13.5007859309529,7.9312517629427,27.0264899952507,0,8.57640755933611,14.3068444846803,45.5890713005566,5.69134746787313,0.956557636372934,8.18275422874548,6.12817184423573,8.89029047440308,3.24621940274555,4.21195767170188,7.30350972906215,2.35019843659535,7.51903431270201,21.1614722252004,5.78117070373318,3.02699560786571,12.7753871307098,12.0226870664518,10.753426750796,13.6442425814374,13.5147804786646,10.3555690563081,30.9030853023719,2.46174797895425,10.0068601036114,5.66222345596294,14.098700508785,0,2.93016358543788,0,25.7434217680975,11.0813097254501,3.10367830158997,5.64232893582013,0.921482106297696,0,0.562677665642051,2.00355669041231,8.24019371133798,0,2.19172787076177,6.90709788827869,0.755798243562828,1.94310496754094,29.7865229215788,18.0402960843848,10.2449920307953,0,7.1620131831762,4.14302303675121,11.974154617347,5.55684950723184,0,0.556608588971108,0,0,0,0,13.3138334494035,3.30529745380596,0,0.344743373241465,0,0,0,0.120596438625408,0,0.110579259931225,0,0.87754158861589,0.10893846351899,9.89908584378083,6.00212016329617,0.91153644677601,0.922255617552241,4.03909399843975,4.23724750495832,1.27600463892768,18.2279210869706,2.13213910407454,11.241262801531,4.55242743545572,14.4604163253136,22.7851617223352,25.2920669269884,27.690561851014,13.282761290693,12.8738628974107,12.6598838716816,0.652931232636591,3.39247371441458,0,2.98578579323551,2.21143911258348,56.2147733338935,9.78519724646052,16.1868760019919,19.1092167594983,0.943615861729479,0,0,10.2174681960773,9.39190170874031,14.5668227720456,27.6209081994573,1.20990716048664,0.30607276163049,6.76096402024821,5.41164309892173,7.2581733978073,37.8852707443096,31.7752277640479,39.5555477193104,45.3995233137244,0,23.8520437582598,10.4135843001079,24.2041221613513,12.3624073344172,16.0748534782668,11.8670362405415,0.0967563312890851,0,0.246346371159628,3.9765496760252,27.9771921612056,1.58186518546373,13.8412343893218,2.18586072873289,0.126621591911757,6.2576442475137,5.45079977710429,6.19013684744122,3.79638258206047,1.58499458869517,1.4889757501569,0,0.288109595976299,7.33089959836052,4.9495747269527,22.4241940021463,24.477066037086,15.6057272983572,3.17845648891671,0,0.273810757783986,0,4.29765441419957,25.7629607193728,2.23425921017803,1.83328339209347,0.717873024576814,3.79390100948083,3.004582336956,2.90122894674434,2.21705459206197,6.12509802022086,0,15.2839373676014,13.351369057749,18.7381851914634,0.0984274815147488,34.2080261545769,0,0.272406812223151,4.01882871162548,5.08895915409765,2.9080823662043,0.899895566206002,0.77380195455795,0.303747783290123,7.04412843958459,1.10327990218877,1.36381929150995,0.633602019116439,0.717149357331379,4.41404953834724,2.1440859791201,0.662091970365432,34.0719840457365,62.444954201677,24.1982017536355,47.3551672158643,5.98650957812437,10.0152875314194,15.1645339389025,16.6568774534585,0.293104467356165,0,0.387848869084652,0.39669780522807,6.33021300172019,26.7829708480335,4.0579216775724,4.71612915298998,2.48543433208317,5.45782623993146,30.4321913122834,8.64727448504361,77.8776334479622,0,0.5013797880454,0.306345576763462,0.983617892129413,0.471162288750703,0,0,0.500763722825999,0.573409195690071,0.554645257684261,0.745156835296601,0,22.9963950650276,2.27473676312472,5.99477200444432,3.76425311517075,0,0,18.955359966633,11.2182388726668,24.411457906115,19.6979125486093,8.55330865958755,20.4656580967203,17.3918451981662,13.7620140624548,19.118775671682,5.61849569960609,17.0447540865162,6.74704668245407,12.7315624638533,28.2000221331782,13.0262440133417,6.26094074174081,12.7718967647636,33.1300534586852,24.4122439922797,10.3653735745459,14.5004252007359,4.64033759878494,17.1181232140405,6.80047199927361,25.4112821835267,26.6032096125076,8.83294287600557,6.74169406425562,17.1553273099941,3.13193150358254,6.80117776536817,14.1228709337539,5.38420749914229,11.8198635113782,10.808050650634,7.01708958651863,28.6236416432327,13.503982678964,10.8123162017966,3.8436227788192,1.0362910251936,4.55789934266073,0.553033744606923,3.3126252502696,6.90897169629488,10.468185232374,4.25892803500336,1.2288645437686,6.12805157740018,50.1968363595874,4.48105264715392,5.68309432880692,3.97261167496785,3.68211900503681,5.73505981649722,11.8194679406265,0,0.431299245586727,1.57265941855896,0.436838552768056,0.848662649770126,0,1.85903646388503,0,4.13405655849444,2.44471409503885,0,5.64281509905094,19.2934650732516,0.385375350578757,0,0.319267718114302,0.205116364240755,0,0.276629009856872,0.645902582527404,0,7.85181748008205,3.42112197708447,5.50285795565037,2.88814165375846,2.66967466827017,17.2589981515025,1.79024599904647,11.5071802374364,16.1364054962816,2.34454203369928,0,1.63771917510097,26.6140955190681,0.135075169236789,0.781078098613847,0,0.317079050969534,0,4.93431990171464,2.48105589194647,0.351742488719241,5.62154681614219,1.07140367175657,0,1.82089681270989,0,2.04015451374069,25.0057752996041,2.57232014156128,0.271878931907327,0.131545547125698,6.14607972596635,660.047138827538,8.55574712070603,0.157115589916002,6.16598759290336,6.39211104356647,74.9268741528616,2.8665101273223,2.85906176706625,0.158013611732727,355.582520201095,1.21700790611806,1.60342272946051,24.4515073712383,37.8995019148569,5.53007729451273,5.16272830584333,6.74492404164222,7.41356621404672,189.677398485536,5.72767171360125,0.31020638566432,0,10.8499768843859,0.687051635306701,6.09589624911347,0,0.821302454849976,2.3196288626764,0.485710993059139,0.233939463462106,0,0,0,0,15.3982100438007,3.16414048242573,1.31135736302374,0.470317296361523,3.92237314806249,0,0.196308467114945,0.594092800654172,1.6906229103336,2.0391253762538,15.0374268767766,11.9247092751118,53.468518419837,2.14264726326789,13.0571102534806,2.16651690060754,0,5.04602211744995,0.860037498908708,0,0.271965960763659,0,1.5870805215462,15.2517957448368,8.31916131536553,10.3830374909709,1.51399709802095,0.109265571963696,10.0091815799035,1.1218771271618,2.93939145792117,6.89211746511337,7.52122617877125,46.3765633095625,68.8667814501379,0.829169439458779,0.103432995861895,4.4779136199206,1.90451545170992,6.20053534425659,4.84182771507692,0.897054900644907,2.03670906490128,1.61693751166575,2.8303177226605,1.36893320434112,18.9932789501137,3.80127688581185,2.32862249582209,120.151224469798,2.45472895518746,1.9307228228694,3.86248369058324,11.7320471201727,5.50086498822899,2.84827324821017,1.33151354837103,11.6738800282795,27.2483218457748 | |||
|short_description=p2@APOBEC3C | |||
}} |
Revision as of 16:04, 21 January 2014
Short description: | p2@APOBEC3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_APOBEC3C_5end |
Coexpression cluster: | C254_prostate_rhabdomyosarcoma_seminal_Fibroblast_transitionalcell_Smooth_Iris |
Association with transcript: | 20bp_to_ENST00000428892_5end |
EntrezGene: | APOBEC3C |
HGNC: | 17353 |
UniProt: | F8WB92 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 5.08e-11 | 43 |
smooth muscle myoblast | 5.08e-11 | 43 |
muscle precursor cell | 5.18e-11 | 58 |
myoblast | 5.18e-11 | 58 |
multi-potent skeletal muscle stem cell | 5.18e-11 | 58 |
muscle cell | 8.66e-11 | 55 |
somatic stem cell | 7.05e-10 | 433 |
multi fate stem cell | 1.71e-09 | 427 |
stem cell | 6.84e-09 | 441 |
electrically responsive cell | 5.96e-08 | 61 |
electrically active cell | 5.96e-08 | 61 |
vascular associated smooth muscle cell | 1.24e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.79e-10 | 83 |
epithelial vesicle | 3.16e-09 | 78 |
skeletal muscle tissue | 1.20e-08 | 62 |
striated muscle tissue | 1.20e-08 | 62 |
myotome | 1.20e-08 | 62 |
somite | 1.47e-08 | 71 |
presomitic mesoderm | 1.47e-08 | 71 |
presumptive segmental plate | 1.47e-08 | 71 |
dermomyotome | 1.47e-08 | 71 |
trunk paraxial mesoderm | 1.47e-08 | 71 |
muscle tissue | 4.62e-08 | 64 |
musculature | 4.62e-08 | 64 |
musculature of body | 4.62e-08 | 64 |
paraxial mesoderm | 4.89e-08 | 72 |
presumptive paraxial mesoderm | 4.89e-08 | 72 |
trunk mesenchyme | 5.50e-08 | 122 |
dense mesenchyme tissue | 6.94e-08 | 73 |
mesenchyme | 6.30e-07 | 160 |
entire embryonic mesenchyme | 6.30e-07 | 160 |
surface structure | 9.76e-07 | 99 |