FFCP PHASE1:Hg19::chr3:147131841..147131863,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_at_chr3:147131841..147131863,+ | |||
|id=chr3:147131841..147131863,+ | |||
|ontology_enrichment_celltype=CL:0000243!6.53e-14!15;CL:0000125!6.53e-14!15;CL:0000030!6.53e-14!15;CL:0000339!6.53e-14!15;CL:0000095!6.77e-14!17;CL:0000123!6.77e-14!17;CL:0002319!1.76e-13!25;CL:0000128!7.01e-10!7;CL:0000126!7.01e-10!7;CL:0000127!7.01e-10!7;CL:0002453!7.01e-10!7;CL:0000133!1.32e-09!59;CL:0000333!2.41e-08!41;CL:0000221!1.00e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000708;3.28e-17;3!CL:0000064;7.88e-17;3!CL:0000067;7.88e-17;3!CL:0005012;7.88e-17;3!CL:0002304;7.88e-17;3!CL:0002603;1.55e-16;3!CL:0002575;1.25e-12;2!CL:0002549;2.75e-12;2!CL:0002319;9.05e-09;25!CL:0002590;2.84e-08;3!CL:0000243;1.27e-07;15!CL:0000125;1.27e-07;15!CL:0000128;2.28e-07;7!CL:0000126;2.28e-07;7!CL:0000127;2.28e-07;7!CL:0000095;8.57e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,3.68e-17,3;CL:0000067,3.68e-17,3;CL:0005012,3.68e-17,3;CL:0002304,3.68e-17,3;CL:0000708,5.11e-17,3;CL:0002603,5.40e-17,3;CL:0002575,1.22e-12,2;CL:0002549,2.53e-12,2;CL:0002319,6.46e-09,25;CL:0000133,1.04e-08,59;CL:0002590,2.95e-08,3;CL:0000221,3.34e-08,72;CL:0000243,9.14e-08,15;CL:0000125,9.14e-08,15;CL:0000030,9.14e-08,15;CL:0000339,9.14e-08,15;CL:0000128,1.47e-07,7;CL:0000126,1.47e-07,7;CL:0000127,1.47e-07,7;CL:0002453,1.47e-07,7;CL:0000095,6.40e-07,17;CL:0000123,6.40e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.95e-18;3!CL:0000339;1.27e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.87e-46!82;UBERON:0000073!1.29e-45!94;UBERON:0001016!1.29e-45!94;UBERON:0005743!8.14e-45!86;UBERON:0000955!2.24e-42!69;UBERON:0006238!2.24e-42!69;UBERON:0002616!3.12e-36!59;UBERON:0001049!2.53e-33!57;UBERON:0005068!2.53e-33!57;UBERON:0006241!2.53e-33!57;UBERON:0007135!2.53e-33!57;UBERON:0003075!2.67e-31!86;UBERON:0007284!2.67e-31!86;UBERON:0004121!3.47e-30!169;UBERON:0002346!3.43e-29!90;UBERON:0000924!5.66e-29!173;UBERON:0006601!5.66e-29!173;UBERON:0000033!4.83e-28!123;UBERON:0000153!4.72e-27!129;UBERON:0007811!4.72e-27!129;UBERON:0003076!9.15e-22!15;UBERON:0003057!9.15e-22!15;UBERON:0004733!3.48e-18!12;UBERON:0002028!3.48e-18!12;UBERON:0007277!3.48e-18!12;UBERON:0003056!6.05e-17!61;UBERON:0002780!9.57e-17!41;UBERON:0001890!9.57e-17!41;UBERON:0006240!9.57e-17!41;UBERON:0004732!1.69e-16!13;UBERON:0002020!3.55e-16!34;UBERON:0003528!3.55e-16!34;UBERON:0003080!3.60e-16!42;UBERON:0002791!5.12e-15!33;UBERON:0002680!1.42e-14!9;UBERON:0001895!1.42e-14!9;UBERON:0010092!1.42e-14!9;UBERON:0001893!2.12e-14!34;UBERON:0001869!8.27e-13!32;UBERON:0002200!3.09e-11!11;UBERON:0006876!3.09e-11!11;UBERON:0000956!6.03e-11!25;UBERON:0000203!6.03e-11!25;UBERON:0002037!6.26e-11!6;UBERON:0006215!6.26e-11!6;UBERON:0000475!5.58e-09!365;UBERON:0005284!1.51e-08!5;UBERON:0002619!2.15e-08!22;UBERON:0002298!2.27e-08!8;UBERON:0007023!2.90e-08!115;UBERON:0001950!5.04e-08!20;UBERON:0000488!2.20e-07!4;UBERON:0002308!6.60e-07!9;UBERON:0000125!6.60e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;5.60e-33;6!UBERON:0004733;2.02e-28;12!UBERON:0002028;2.02e-28;12!UBERON:0004732;3.83e-26;13!UBERON:0006876;1.34e-23;11!UBERON:0002680;8.07e-22;9!UBERON:0001895;8.07e-22;9!UBERON:0005284;4.80e-18;5!UBERON:0003210;3.28e-17;3!UBERON:0001778;7.88e-17;3!UBERON:0001775;7.88e-17;3!UBERON:0000488;9.28e-13;4!UBERON:0005629;2.75e-12;2!UBERON:0005358;2.75e-12;2!UBERON:0001886;2.75e-12;2!UBERON:0004086;2.75e-12;2!UBERON:0005282;2.75e-12;2!UBERON:0005281;2.75e-12;2!UBERON:0001017;2.84e-10;75!UBERON:0002203;1.15e-08;6!UBERON:0001768;1.15e-08;6!UBERON:0002200;1.15e-08;6!UBERON:0000955;1.31e-08;68!UBERON:0001016;2.45e-08;83!UBERON:0001896;2.84e-08;3!UBERON:0005290;2.84e-08;3!UBERON:0000073;4.07e-07;53!UBERON:0002616;4.07e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.92e-33,6;UBERON:0006215,1.92e-33,6;UBERON:0004733,1.08e-28,12;UBERON:0002028,1.08e-28,12;UBERON:0007277,1.08e-28,12;UBERON:0004732,2.15e-26,13;UBERON:0006876,8.19e-24,11;UBERON:0003076,1.03e-22,15;UBERON:0003057,1.03e-22,15;UBERON:0002680,3.99e-22,9;UBERON:0001895,3.99e-22,9;UBERON:0010092,3.99e-22,9;UBERON:0001017,5.93e-22,81;UBERON:0000955,2.00e-21,68;UBERON:0006238,2.00e-21,68;UBERON:0001016,2.24e-19,89;UBERON:0005284,4.71e-18,5;UBERON:0001778,3.68e-17,3;UBERON:0001775,3.68e-17,3;UBERON:0003210,5.11e-17,3;UBERON:0004121,2.44e-14,171;UBERON:0000924,2.44e-14,171;UBERON:0006601,2.44e-14,171;UBERON:0000488,5.27e-13,4;UBERON:0005629,2.53e-12,2;UBERON:0005358,2.53e-12,2;UBERON:0001886,2.53e-12,2;UBERON:0004086,2.53e-12,2;UBERON:0005282,2.53e-12,2;UBERON:0005281,2.53e-12,2;UBERON:0000073,2.90e-12,53;UBERON:0002616,2.90e-12,53;UBERON:0003075,1.11e-11,82;UBERON:0007284,1.11e-11,82;UBERON:0001049,1.71e-11,56;UBERON:0005068,1.71e-11,56;UBERON:0006241,1.71e-11,56;UBERON:0007135,1.71e-11,56;UBERON:0010371,1.97e-11,104;UBERON:0002346,5.30e-11,86;UBERON:0002203,7.92e-09,6;UBERON:0001768,7.92e-09,6;UBERON:0002200,7.92e-09,6;UBERON:0001896,3.06e-08,3;UBERON:0005290,3.06e-08,3;UBERON:0010096,3.06e-08,3;UBERON:0010314,3.43e-07,132 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.618831764800233,0,0,0,0,0,1.60057375499824,1.63200552995402,1.56727360739044,0.286235987131057,0.273748850145768,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55244006342983,1.99556457716308,1.49319135678314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,2.4217188423189,3.45705554687999,0,0,0,0.149448680551801,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.600182192168805,0.206105058476878,0.515281080091258,0.558350568994769,0,0,1.00973509697646,0.0920498986422993,0,1.06502877754984,0.403008392910561,0,0,0,0,0,0,0,0.414644220061482,0.252320850875628,0.36497735907583,0,7.71889125831462,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514703430895577,0,0,0,0,0,0,0,0.927443239800615,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12131084345361,3.05172048183296,2.12681028880755,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,1.52456774533478,0,0.773288812777695,0,1.27587750330633,0,0,0,0.613457458595699,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0,0,4.89502893656851,11.6668764095691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.330037999682352,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0,0.340906509664404,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,3.34942532423701,1.2655176988749,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0.969332746095218,0.371072392647405,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.361789315876224,25.9388951739042,6.7453348558047,23.6438095162838,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0.269604531922708,0,0.468528891450678,0,0,0,0,0,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0,1.20390222730132,0,0,0,0,0,0.451961481561065,0,0,0.126621591911757,0,0,0,0,0,0,0.171594997861965,0.720273989940749,0,0,1.08723364858891,0.313808538937,0.203996435272644,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.681552087141687,0.226624183040251,0,0,0.646414781807753,0.39669780522807,0,0,0,0,0,0,0.395223263795889,0,0,0,0,0,0,0.157054096250234,0.886068179966986,0.244052529803926,1.1267183763585,3.44045517414043,1.22021956690538,0.0620964029413835,1.798532254171,0.124980407962107,0,0,0,0,0.28984205722165,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0.214441591374926,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0.344429959321631,0,0.184105950251841,0,0,0,0.862598491173454,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0.252071696221718,0.138314504928436,0.484426936895553,0,0,0.11796972334774,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,1.56215619722769,0,0.19024743058172,0.546974809018219,0,0,0,0,0,0.672567444437648,0,0,0,0,0,0.543757863814654,0.263091094251396,0.118193840883968,0,0,1.25692471932802,0,0,0,0,0.214429632529969,0,0.348724276104376,4.34645680756449,0,0,0,0,0,0.591660003652827,0.340853619036631,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.594092800654172,0.4226557275834,0,0,0,0,0,0,0,0,0,0.143339583151451,5.52200467676146,0.0679914901909147,0.436350690340377,1.0580536810308,0.371995018166751,0,0,0.252332849670158,0,0.380095503034311,0,0,0.0918948995348449,0,0,0.267964130156178,1.65833887891756,0.413731983447581,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426909383510862,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:147131841..147131863,+ | |||
}} |
Revision as of 21:52, 21 January 2014
Short description: | p@chr3:147131841..147131863, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:147131841..147131863, + |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 3.68e-17 | 3 |
ciliated epithelial cell | 3.68e-17 | 3 |
multi-ciliated epithelial cell | 3.68e-17 | 3 |
non-pigmented ciliary epithelial cell | 3.68e-17 | 3 |
leptomeningeal cell | 5.11e-17 | 3 |
astrocyte of the cerebellum | 5.40e-17 | 3 |
central nervous system pericyte | 1.22e-12 | 2 |
fibroblast of choroid plexus | 2.53e-12 | 2 |
neural cell | 6.46e-09 | 25 |
neurectodermal cell | 1.04e-08 | 59 |
smooth muscle cell of the brain vasculature | 2.95e-08 | 3 |
ectodermal cell | 3.34e-08 | 72 |
glial cell (sensu Vertebrata) | 9.14e-08 | 15 |
glial cell | 9.14e-08 | 15 |
glioblast | 9.14e-08 | 15 |
glioblast (sensu Vertebrata) | 9.14e-08 | 15 |
oligodendrocyte | 1.47e-07 | 7 |
macroglial cell | 1.47e-07 | 7 |
astrocyte | 1.47e-07 | 7 |
oligodendrocyte precursor cell | 1.47e-07 | 7 |
neuron associated cell | 6.40e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.40e-07 | 17 |