CL:0002551: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002551 | |||
|is_a=CL:0002620 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=fibroblast of dermis | |||
|namespace=cell | |||
|obo_creation_date=2011-02-28T05:05:33Z | |||
|part_of=UBERON:0002067 | |part_of=UBERON:0002067 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Revision as of 10:28, 12 September 2014
| Name: | fibroblast of dermis |
|---|---|
| Namespace: | cell |
| Created by: | tmeehan |
| Creation date: | 2011-02-28T05:05:33Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002620(skin fibroblast) |
|---|---|
| part_of: | UBERON:0002067(dermis) |
Children
| derives from: | FF:0000062 (human dermal fibroblast sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11269-116G9 (Fibroblast - Dermal, donor1)
- 11346-117G5 (Fibroblast - Dermal, donor2)
- 11418-118F5 (Fibroblast - Dermal, donor3)
- 11450-119A1 (Fibroblast - Dermal, donor4)
- 11454-119A5 (Fibroblast - Dermal, donor5)
- 11458-119A9 (Fibroblast - Dermal, donor6)
Mouse (Mus musculus)
- 11269-116G9 (Fibroblast - Dermal, donor1)
- 11346-117G5 (Fibroblast - Dermal, donor2)
- 11418-118F5 (Fibroblast - Dermal, donor3)
- 11450-119A1 (Fibroblast - Dermal, donor4)
- 11454-119A5 (Fibroblast - Dermal, donor5)
- 11458-119A9 (Fibroblast - Dermal, donor6)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002551 (fibroblast of dermis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.47e-74 | FFCP PHASE2:Hg19::chr7:107707064..107707079,-#_90cd7a16675ef4bb6527dbc167a50537 | p@chr7:107707064..107707079, - |
| 5.47e-74 | FFCP PHASE1:Hg19::chr7:107707064..107707079,-#_90cd7a16675ef4bb6527dbc167a50537 | p@chr7:107707064..107707079, - |
| 5.47e-74 | FFCP PHASE2:Hg19::chr7:107707083..107707099,-#_90cd7a16675ef4bb6527dbc167a50537 | p@chr7:107707083..107707099, - |
| 5.47e-74 | FFCP PHASE1:Hg19::chr7:107707083..107707099,-#_90cd7a16675ef4bb6527dbc167a50537 | p@chr7:107707083..107707099, - |
| 3.67e-66 | FFCP PHASE2:Hg19::chr1:45087872..45087892,+#_7834d364ae744f22b5b193fe760972e3 | p@chr1:45087872..45087892, + |
| 3.67e-66 | FFCP PHASE1:Hg19::chr1:45087872..45087892,+#_7834d364ae744f22b5b193fe760972e3 | p@chr1:45087872..45087892, + |
| 4.12e-59 | FFCP PHASE2:Hg19::chr1:10228206..10228218,+#_f38e27bb221e91698f24d0aac4bc1865 | p@chr1:10228206..10228218, + |
| 4.12e-59 | FFCP PHASE1:Hg19::chr1:10228206..10228218,+#_f38e27bb221e91698f24d0aac4bc1865 | p@chr1:10228206..10228218, + |
| 8.06e-53 | FFCP PHASE2:Hg19::chr8:128387795..128387801,+#_ef9f565164d0e2713ad3bcdd27f9ec74 | p@chr8:128387795..128387801, + |
| 8.06e-53 | FFCP PHASE1:Hg19::chr8:128387795..128387801,+#_ef9f565164d0e2713ad3bcdd27f9ec74 | p@chr8:128387795..128387801, + |
| 8.88e-50 | FFCP PHASE2:Hg19::chr1:45088343..45088354,+#_1b14d61fdd4e0484ca07ee3b6984a033 | p@chr1:45088343..45088354, + |
| 8.88e-50 | FFCP PHASE1:Hg19::chr1:45088343..45088354,+#_1b14d61fdd4e0484ca07ee3b6984a033 | p@chr1:45088343..45088354, + |
| 5.62e-43 | FFCP PHASE2:Hg19::chr7:98258032..98258045,+#_db6c020ffedd2e86b5d67adb3446d4f3 | p@chr7:98258032..98258045, + |
| 5.62e-43 | FFCP PHASE1:Hg19::chr7:98258032..98258045,+#_db6c020ffedd2e86b5d67adb3446d4f3 | p@chr7:98258032..98258045, + |
| 5.46e-40 | FFCP PHASE2:Hg19::chr5:33794920..33794939,-#_010df5e8129935125cb9ca6e137bc217 | p@chr5:33794920..33794939, - |
| 5.46e-40 | FFCP PHASE1:Hg19::chr5:33794920..33794939,-#_010df5e8129935125cb9ca6e137bc217 | p@chr5:33794920..33794939, - |
| 4.29e-38 | FFCP PHASE2:Hg19::chr8:141656896..141656918,-#_9a556c23e5780a1f21f8406aba0e8a5b | p@chr8:141656896..141656918, - |
| 4.29e-38 | FFCP PHASE1:Hg19::chr8:141656896..141656918,-#_9a556c23e5780a1f21f8406aba0e8a5b | p@chr8:141656896..141656918, - |
| 7.14e-38 | FFCP PHASE2:Hg19::chr4:89454373..89454379,-#_1f7559558f9efd1e3fc451a1facf1701 | p@chr4:89454373..89454379, - |
| 7.14e-38 | FFCP PHASE1:Hg19::chr4:89454373..89454379,-#_1f7559558f9efd1e3fc451a1facf1701 | p@chr4:89454373..89454379, - |
| 3.46e-33 | FFCP PHASE2:Hg19::chr5:33794904..33794916,-#_fa6a0346d7d07da13b90f756e06abb0c | p@chr5:33794904..33794916, - |
| 3.46e-33 | FFCP PHASE1:Hg19::chr5:33794904..33794916,-#_fa6a0346d7d07da13b90f756e06abb0c | p@chr5:33794904..33794916, - |
| 8.45e-31 | FFCP PHASE2:Hg19::chr10:124254447..124254458,-#_de6ca84beeeb8f80e50223798f16231e | p@chr10:124254447..124254458, - |
| 8.45e-31 | FFCP PHASE1:Hg19::chr10:124254447..124254458,-#_de6ca84beeeb8f80e50223798f16231e | p@chr10:124254447..124254458, - |
| 1.52e-30 | FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_86ad4fca479b64b3f7ba4930c1eaca0d | p@chr1:45087902..45087912, + |
| 1.52e-30 | FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_86ad4fca479b64b3f7ba4930c1eaca0d | p@chr1:45087902..45087912, + |
| 3.85e-26 | FFCP PHASE2:Hg19::chr5:33794876..33794902,-#_4994a582f01f7c0db4ca1e608ac5a85d | p@chr5:33794876..33794902, - |
| 3.85e-26 | FFCP PHASE1:Hg19::chr5:33794876..33794902,-#_4994a582f01f7c0db4ca1e608ac5a85d | p@chr5:33794876..33794902, - |
| 2.14e-25 | FFCP PHASE2:Hg19::chr12:66036083..66036098,-#_d31f6a5fdb63cc4754c51dfeb6358f60 | p3@ENST00000539653 |
| 2.14e-25 | FFCP PHASE1:Hg19::chr12:66036083..66036098,-#_d31f6a5fdb63cc4754c51dfeb6358f60 | p3@ENST00000539653 |
| 2.27e-25 | FFCP PHASE2:Hg19::chr6:5498703..5498727,+#_3282b4c6304fba98dce7fa0db3c50928 | p@chr6:5498703..5498727, + |
| 2.27e-25 | FFCP PHASE1:Hg19::chr6:5498703..5498727,+#_3282b4c6304fba98dce7fa0db3c50928 | p@chr6:5498703..5498727, + |
| 2.75e-25 | FFCP PHASE1:Hg19::chrX:118362928..118362933,+#_0a9eb5aa61a8d600227f41bc49b43b9e | p@chrX:118362928..118362933, + |
| 2.75e-25 | FFCP PHASE2:Hg19::chrX:118362928..118362933,+#_0a9eb5aa61a8d600227f41bc49b43b9e | p@chrX:118362928..118362933, + |
| 6.03e-25 | FFCP PHASE2:Hg19::chr11:26210383..26210402,+#_ce66060ed2cc1f83bc9b744d74961919 | p2@ENST00000531798 |
| 6.03e-25 | FFCP PHASE1:Hg19::chr11:26210383..26210402,+#_ce66060ed2cc1f83bc9b744d74961919 | p2@ENST00000531798 |
| 2.36e-24 | FFCP PHASE2:Hg19::chrX:45364675..45364690,+#_8516bc62a59a28497117c904d80ce6ae | p2@ENST00000435394, p2@uc004dgj.1 |
| 2.36e-24 | FFCP PHASE1:Hg19::chrX:45364675..45364690,+#_8516bc62a59a28497117c904d80ce6ae | p2@ENST00000435394, p2@uc004dgj.1 |
| 1.81e-23 | FFCP PHASE2:Hg19::chr21:36208749..36208768,+#_48e77b452c62cb1b84357626a326ee8f | p@chr21:36208749..36208768, + |
| 1.81e-23 | FFCP PHASE1:Hg19::chr21:36208749..36208768,+#_48e77b452c62cb1b84357626a326ee8f | p@chr21:36208749..36208768, + |
| 1.97e-23 | FFCP PHASE2:Hg19::chr18:52969844..52969895,-#_8c96c8b36dd52e39fdaebf59d0768f7a | p27@TCF4 |
| 1.97e-23 | FFCP PHASE1:Hg19::chr18:52969844..52969895,-#_8c96c8b36dd52e39fdaebf59d0768f7a | p27@TCF4 |
| 1.97e-23 | FFCP PHASE2:Hg19::chr12:66036137..66036157,-#_8c96c8b36dd52e39fdaebf59d0768f7a | p1@ENST00000539653, p2@ENST00000544557 |
| 1.97e-23 | FFCP PHASE1:Hg19::chr12:66036137..66036157,-#_8c96c8b36dd52e39fdaebf59d0768f7a | p1@ENST00000539653, p2@ENST00000544557 |
| 3.27e-22 | FFCP PHASE2:Hg19::chr1:153744081..153744096,+#_ad2cdbead42d00f4a21856baedfedd6c | p@chr1:153744081..153744096, + |
| 3.27e-22 | FFCP PHASE1:Hg19::chr1:153744081..153744096,+#_ad2cdbead42d00f4a21856baedfedd6c | p@chr1:153744081..153744096, + |
| 7.72e-22 | FFCP PHASE2:Hg19::chr12:66036125..66036136,-#_ad1a5b37083853f716fb712d619ea243 | p2@ENST00000539653 |
| 7.72e-22 | FFCP PHASE1:Hg19::chr12:66036125..66036136,-#_ad1a5b37083853f716fb712d619ea243 | p2@ENST00000539653 |
| 8.48e-22 | FFCP PHASE2:Hg19::chr3:14212107..14212119,-#_896d285102a1290bd713ed7236799899 | p2@XPC |
| 8.48e-22 | FFCP PHASE1:Hg19::chr3:14212107..14212119,-#_896d285102a1290bd713ed7236799899 | p2@XPC |
| 2.38e-21 | FFCP PHASE2:Hg19::chr11:15145622..15145653,+#_ec618d2f42c367e9fe0c561e37b8d575 | p@chr11:15145622..15145653, + |
| 2.38e-21 | FFCP PHASE1:Hg19::chr11:15145622..15145653,+#_ec618d2f42c367e9fe0c561e37b8d575 | p@chr11:15145622..15145653, + |
| 6.26e-21 | FFCP PHASE2:Hg19::chr4:127699583..127699608,-#_5d5517834ad0c34c62435e9c34dd1558 | p@chr4:127699583..127699608, - |
| 6.26e-21 | FFCP PHASE1:Hg19::chr4:127699583..127699608,-#_5d5517834ad0c34c62435e9c34dd1558 | p@chr4:127699583..127699608, - |
| 2.63e-20 | FFCP PHASE2:Hg19::chr1:241577036..241577064,+#_2c898a6fc7a5021897bce59b5f83736a | p@chr1:241577036..241577064, + |
| 2.63e-20 | FFCP PHASE1:Hg19::chr1:241577036..241577064,+#_2c898a6fc7a5021897bce59b5f83736a | p@chr1:241577036..241577064, + |
| 3.78e-20 | FFCP PHASE2:Hg19::chr15:51520746..51520771,-#_2d7a82472497f429b8b469c3446ac062 | p@chr15:51520746..51520771, - |
| 3.78e-20 | FFCP PHASE1:Hg19::chr15:51520746..51520771,-#_2d7a82472497f429b8b469c3446ac062 | p@chr15:51520746..51520771, - |
| 2.26e-19 | FFCP PHASE2:Hg19::chr6:85474198..85474212,-#_0e62e6123f621b7c91aadf0056202c5f | p3@TBX18 |
| 2.26e-19 | FFCP PHASE1:Hg19::chr6:85474198..85474212,-#_0e62e6123f621b7c91aadf0056202c5f | p3@TBX18 |
| 9.05e-19 | FFCP PHASE2:Hg19::chr14:38371323..38371347,-#_c2478374fbc24af7cdc7ce2c40d97ab2 | p1@ENST00000554257, p1@uc001wuk.1 |
| 9.05e-19 | FFCP PHASE1:Hg19::chr14:38371323..38371347,-#_c2478374fbc24af7cdc7ce2c40d97ab2 | p1@ENST00000554257, p1@uc001wuk.1 |
| 1.31e-18 | FFCP PHASE1:Hg19::chr11:15136462..15136478,+#_6d651fa60b49652136b611494d33b620 | p1@INSC |
| 1.31e-18 | FFCP PHASE2:Hg19::chr11:15136462..15136478,+#_6d651fa60b49652136b611494d33b620 | p1@INSC |
| 8.22e-18 | FFCP PHASE1:Hg19::chr2:102091478..102091490,-#_98f16d76b19df566a915a3a0e8b09bcc | p3@RFX8 |
| 8.22e-18 | FFCP PHASE2:Hg19::chr2:102091478..102091490,-#_98f16d76b19df566a915a3a0e8b09bcc | p3@RFX8 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr16:86797626..86797635,-#_cb475b5f98c5ba52c76a6aa49ae95002 | p@chr16:86797626..86797635, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr16:86797626..86797635,-#_cb475b5f98c5ba52c76a6aa49ae95002 | p@chr16:86797626..86797635, - |
| 1.44e-17 | FFCP PHASE2:Hg19::chr18:44840511..44840522,+#_06ad8ae9a4bd6fa51659059fd9cf2842 | p@chr18:44840511..44840522, + |
| 1.44e-17 | FFCP PHASE1:Hg19::chr18:44840511..44840522,+#_06ad8ae9a4bd6fa51659059fd9cf2842 | p@chr18:44840511..44840522, + |
| 2.19e-17 | FFCP PHASE2:Hg19::chr2:95983133..95983144,+#_355fd8e0b5bd1bf03540223f179b7954 | p@chr2:95983133..95983144, + |
| 2.19e-17 | FFCP PHASE1:Hg19::chr2:95983133..95983144,+#_355fd8e0b5bd1bf03540223f179b7954 | p@chr2:95983133..95983144, + |
| 2.31e-17 | FFCP PHASE1:Hg19::chr1:224862010..224862011,+#_141e84e906727e8025e4c7cf8ce00fb9 | p@chr1:224862010..224862011, + |
| 2.31e-17 | FFCP PHASE2:Hg19::chr1:224862010..224862011,+#_141e84e906727e8025e4c7cf8ce00fb9 | p@chr1:224862010..224862011, + |
| 9.08e-17 | FFCP PHASE2:Hg19::chr12:66036219..66036262,-#_92db965435c8fce051d65fe3fbd6773a | p1@ENST00000544557 |
| 9.08e-17 | FFCP PHASE1:Hg19::chr12:66036219..66036262,-#_92db965435c8fce051d65fe3fbd6773a | p1@ENST00000544557 |
| 1.2e-16 | FFCP PHASE2:Hg19::chr2:102091590..102091601,-#_2f041199151c964db94f2d4ebf651b7a | p5@RFX8 |
| 1.2e-16 | FFCP PHASE1:Hg19::chr2:102091590..102091601,-#_2f041199151c964db94f2d4ebf651b7a | p5@RFX8 |
| 1.62e-16 | FFCP PHASE2:Hg19::chr5:174252830..174252847,+#_0ff1266bba5e2f27cff90a387ad8e0b6 | p@chr5:174252830..174252847, + |
| 1.62e-16 | FFCP PHASE1:Hg19::chr5:174252830..174252847,+#_0ff1266bba5e2f27cff90a387ad8e0b6 | p@chr5:174252830..174252847, + |
| 1.9e-16 | FFCP PHASE2:Hg19::chr4:47857451..47857469,-#_9830def7f767a78ca7f08ccc7f5d616a | p@chr4:47857451..47857469, - |
| 1.9e-16 | FFCP PHASE1:Hg19::chr4:47857451..47857469,-#_9830def7f767a78ca7f08ccc7f5d616a | p@chr4:47857451..47857469, - |
| 3.84e-16 | FFCP PHASE2:Hg19::chr18:32347623..32347632,-#_492a522ecefa796ff73113e72a9792ab | p@chr18:32347623..32347632, - |
| 3.84e-16 | FFCP PHASE1:Hg19::chr18:32347623..32347632,-#_492a522ecefa796ff73113e72a9792ab | p@chr18:32347623..32347632, - |
| 6.4e-16 | FFCP PHASE2:Hg19::chr20:61340152..61340173,+#_1a21e25d8f9edfb5be8f05d018692115 | p2@NTSR1 |
| 6.4e-16 | FFCP PHASE1:Hg19::chr20:61340152..61340173,+#_1a21e25d8f9edfb5be8f05d018692115 | p2@NTSR1 |
| 1.54e-15 | FFCP PHASE2:Hg19::chr17:78808278..78808309,-#_21f23ce4c4910b46de2e50be06622f14 | p@chr17:78808278..78808309, - |
| 1.54e-15 | FFCP PHASE1:Hg19::chr17:78808278..78808309,-#_21f23ce4c4910b46de2e50be06622f14 | p@chr17:78808278..78808309, - |
| 2.13e-15 | FFCP PHASE2:Hg19::chr4:5754385..5754405,+#_b8184f69cf8a1189efd209bc6b500766 | p3@EVC |
| 2.13e-15 | FFCP PHASE1:Hg19::chr4:5754385..5754405,+#_b8184f69cf8a1189efd209bc6b500766 | p3@EVC |
| 4.32e-15 | FFCP PHASE2:Hg19::chr10:4806256..4806291,-#_b3d790414ed5ba9c6da1e43002bcc8f1 | p@chr10:4806256..4806291, - |
| 4.32e-15 | FFCP PHASE1:Hg19::chr10:4806256..4806291,-#_b3d790414ed5ba9c6da1e43002bcc8f1 | p@chr10:4806256..4806291, - |
| 6.55e-15 | FFCP PHASE2:Hg19::chr13:45289884..45289918,-#_9dfc37314421a674442dab304bdfa73e | p@chr13:45289884..45289918, - |
| 6.55e-15 | FFCP PHASE1:Hg19::chr13:45289884..45289918,-#_9dfc37314421a674442dab304bdfa73e | p@chr13:45289884..45289918, - |
| 7.14e-15 | FFCP PHASE2:Hg19::chr6:35465639..35465645,-#_0a512d51f99ed32baa74a304c598897a | p@chr6:35465639..35465645, - |
| 7.14e-15 | FFCP PHASE1:Hg19::chr6:35465639..35465645,-#_0a512d51f99ed32baa74a304c598897a | p@chr6:35465639..35465645, - |
| 9.07e-15 | FFCP PHASE2:Hg19::chr15:85873537..85873558,-#_d423f349734757a9b3f1ae475d9868a6 | p1@ENST00000558365 |
| 9.07e-15 | FFCP PHASE1:Hg19::chr15:85873537..85873558,-#_d423f349734757a9b3f1ae475d9868a6 | p1@ENST00000558365 |
| 1.51e-14 | FFCP PHASE2:Hg19::chr2:177022022..177022060,+#_cea257cccd928f7611782c086ff7cbdd | p@chr2:177022022..177022060, + |
| 1.51e-14 | FFCP PHASE1:Hg19::chr2:177022022..177022060,+#_cea257cccd928f7611782c086ff7cbdd | p@chr2:177022022..177022060, + |
