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{{CL
{{CL
|id=CL:0002590
|alt_id=
|name=smooth muscle cell of the brain vasculature
|namespace=cell
|def="A vascular associated smooth muscle cell of the brain vasculature." [GOC:tfm]
|xref=
|is_a=CL:0000359
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:01:20Z
|def="A vascular associated smooth muscle cell of the brain vasculature." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002590
|is_a=CL:0000359 ;;CL:0002319
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell of the brain vasculature
|namespace=cell
|obo_creation_date=2011-03-06T05:01:20Z
|part_of=UBERON:0005284
|part_of=UBERON:0005284
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:29, 12 September 2014

Name:smooth muscle cell of the brain vasculature
Namespace:cell
Definition:"A vascular associated smooth muscle cell of the brain vasculature." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:01:20Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000359(vascular associated smooth muscle cell),CL:0002319(neural cell)
part_of:UBERON:0005284(brain vasculature)



Children


derives from:FF:0000170 (human smooth muscle cell of the brain vasculature sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
  • 11315-117D1 (Smooth Muscle Cells - Brain Vascular, donor2)
  • 11391-118C5 (Smooth Muscle Cells - Brain Vascular, donor3)

Mouse (Mus musculus)

  • 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
  • 11315-117D1 (Smooth Muscle Cells - Brain Vascular, donor2)
  • 11391-118C5 (Smooth Muscle Cells - Brain Vascular, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002590 (smooth muscle cell of the brain vasculature), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.53e-44FFCP PHASE1:Hg19::chr8:128902571..128902583,+#_57f2b181eb68b311f5c96866d9c467a6p15@PVT1
1.53e-44FFCP PHASE2:Hg19::chr8:128902571..128902583,+#_57f2b181eb68b311f5c96866d9c467a6p15@PVT1
4.84e-30FFCP PHASE2:Hg19::chr11:73020686..73020697,+#_806fa2cbb2345f82deefa1b9dcd49f33p23@ARHGEF17
4.84e-30FFCP PHASE1:Hg19::chr11:73020686..73020697,+#_806fa2cbb2345f82deefa1b9dcd49f33p23@ARHGEF17
3.38e-25FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_a795af5f4532ec82aa8783bbc85e840bp20@RIMS1
3.38e-25FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_a795af5f4532ec82aa8783bbc85e840bp20@RIMS1
3.27e-23FFCP PHASE1:Hg19::chr3:147106858..147106869,-#_2732bd3e803bd38702fd6e5b2a3b9fc9p25@ZIC4
3.27e-23FFCP PHASE2:Hg19::chr3:147106858..147106869,-#_2732bd3e803bd38702fd6e5b2a3b9fc9p25@ZIC4
4.09e-23FFCP PHASE2:Hg19::chr10:14457224..14457226,+#_5e4d8104b18544ba50ad3d848013c600p@chr10:14457224..14457226, +
4.09e-23FFCP PHASE2:Hg19::chr5:156811295..156811314,+#_5e4d8104b18544ba50ad3d848013c600p35@CYFIP2
4.09e-23FFCP PHASE1:Hg19::chr10:14457224..14457226,+#_5e4d8104b18544ba50ad3d848013c600p@chr10:14457224..14457226, +
4.09e-23FFCP PHASE1:Hg19::chr5:156811295..156811314,+#_5e4d8104b18544ba50ad3d848013c600p35@CYFIP2
1.29e-21FFCP PHASE2:Hg19::chr6:72970412..72970435,+#_5e9e85ba5f92eeeb2b91e8f273c31221p11@RIMS1
1.29e-21FFCP PHASE1:Hg19::chr6:72970412..72970435,+#_5e9e85ba5f92eeeb2b91e8f273c31221p11@RIMS1
2.77e-20FFCP PHASE1:Hg19::chr6:72970389..72970411,+#_877b2f3bc58d043f4a622000e9722befp6@RIMS1
2.77e-20FFCP PHASE2:Hg19::chr6:72970389..72970411,+#_877b2f3bc58d043f4a622000e9722befp6@RIMS1
3.32e-20FFCP PHASE1:Hg19::chrX:31284990..31284993,-#_905f43a16ee61637e08b56bebdd29c96p17@DMD
3.32e-20FFCP PHASE2:Hg19::chrX:31284990..31284993,-#_905f43a16ee61637e08b56bebdd29c96p17@DMD
2.04e-19FFCP PHASE2:Hg19::chr10:60516419..60516420,+#_91730613f7a0b06d7406265889732d28p@chr10:60516419..60516420, +
2.04e-19FFCP PHASE1:Hg19::chr10:60516419..60516420,+#_91730613f7a0b06d7406265889732d28p@chr10:60516419..60516420, +
6.76e-18FFCP PHASE1:Hg19::chr4:56904090..56904097,-#_a308951a22b8d288f0b384d6fabd782bp@chr4:56904090..56904097, -
6.76e-18FFCP PHASE2:Hg19::chr4:56904090..56904097,-#_a308951a22b8d288f0b384d6fabd782bp@chr4:56904090..56904097, -
8.0e-18FFCP PHASE2:Hg19::chr12:78333879..78333896,+#_d01fd209d114b15079ee9f2876462c6fp21@NAV3
8.0e-18FFCP PHASE1:Hg19::chr12:78333879..78333896,+#_d01fd209d114b15079ee9f2876462c6fp21@NAV3
8.98e-18FFCP PHASE1:Hg19::chr1:31842256..31842273,+#_fcbde8d553e9b22d6eb6a07c4a328adap@chr1:31842256..31842273, +
8.98e-18FFCP PHASE2:Hg19::chr1:31842256..31842273,+#_fcbde8d553e9b22d6eb6a07c4a328adap@chr1:31842256..31842273, +
9.46e-18FFCP PHASE2:Hg19::chr9:16515712..16515717,-#_d18e2725cb32b4c002eb910e3167c4e4p@chr9:16515712..16515717, -
9.46e-18FFCP PHASE1:Hg19::chr9:16515712..16515717,-#_d18e2725cb32b4c002eb910e3167c4e4p@chr9:16515712..16515717, -
1.64e-17FFCP PHASE1:Hg19::chr10:128000698..128000700,-#_9c9392368a5274a95ae9548d21977e90p@chr10:128000698..128000700, -
1.64e-17FFCP PHASE2:Hg19::chr10:128000698..128000700,-#_9c9392368a5274a95ae9548d21977e90p@chr10:128000698..128000700, -
7.83e-16FFCP PHASE2:Hg19::chr4:169540045..169540056,+#_ee03344eabdb79b5b96392aab4983c6ep@chr4:169540045..169540056, +
7.83e-16FFCP PHASE1:Hg19::chr4:169540045..169540056,+#_ee03344eabdb79b5b96392aab4983c6ep@chr4:169540045..169540056, +
1.32e-15FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_1273acc0a8965c99c6f829afba7aa3d3p@chr11:60640905..60640919, +
1.32e-15FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_1273acc0a8965c99c6f829afba7aa3d3p@chr11:60640905..60640919, +
8.08e-15FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_7ee42c1dca2aa382c94c5104df492cb3p6@CCDC86
8.08e-15FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_7ee42c1dca2aa382c94c5104df492cb3p6@CCDC86
1.4e-14FFCP PHASE1:Hg19::chr5:142023741..142023750,-#_85b7231bc7d7bcbb1ce09cc9207553afp18@FGF1
1.4e-14FFCP PHASE2:Hg19::chr5:142023741..142023750,-#_85b7231bc7d7bcbb1ce09cc9207553afp18@FGF1
1.6e-14FFCP PHASE2:Hg19::chr3:61876111..61876115,+#_8cb83ea2d06e15b694bb0ae8ea672d6cp@chr3:61876111..61876115, +
1.6e-14FFCP PHASE1:Hg19::chr11:60680219..60680235,+#_8cb83ea2d06e15b694bb0ae8ea672d6cp@chr11:60680219..60680235, +
1.6e-14FFCP PHASE2:Hg19::chr11:60680219..60680235,+#_8cb83ea2d06e15b694bb0ae8ea672d6cp@chr11:60680219..60680235, +
1.6e-14FFCP PHASE1:Hg19::chr3:61876111..61876115,+#_8cb83ea2d06e15b694bb0ae8ea672d6cp@chr3:61876111..61876115, +
1.62e-14FFCP PHASE1:Hg19::chr2:217529087..217529099,+#_d7112876d22bb6db3b144e923690388bp@chr2:217529087..217529099, +
1.62e-14FFCP PHASE2:Hg19::chr12:15942091..15942108,-#_d7112876d22bb6db3b144e923690388bp13@EPS8
1.62e-14FFCP PHASE2:Hg19::chr2:217529087..217529099,+#_d7112876d22bb6db3b144e923690388bp@chr2:217529087..217529099, +
1.62e-14FFCP PHASE1:Hg19::chr12:15942091..15942108,-#_d7112876d22bb6db3b144e923690388bp13@EPS8
1.83e-14FFCP PHASE1:Hg19::chr9:16477370..16477375,-#_ebd1a53f31c2e61c86efca5c3dc3aa22p@chr9:16477370..16477375, -
1.83e-14FFCP PHASE2:Hg19::chr9:16477370..16477375,-#_ebd1a53f31c2e61c86efca5c3dc3aa22p@chr9:16477370..16477375, -
2.09e-14FFCP PHASE2:Hg19::chr11:74751521..74751532,+#_226809b7a180456f0d2dc380eea25af4p@chr11:74751521..74751532, +
2.09e-14FFCP PHASE1:Hg19::chr12:279860..279871,+#_226809b7a180456f0d2dc380eea25af4p@chr12:279860..279871, +
2.09e-14FFCP PHASE2:Hg19::chr12:279860..279871,+#_226809b7a180456f0d2dc380eea25af4p@chr12:279860..279871, +
2.09e-14FFCP PHASE1:Hg19::chr11:74751521..74751532,+#_226809b7a180456f0d2dc380eea25af4p@chr11:74751521..74751532, +
5.73e-14FFCP PHASE1:Hg19::chr1:103371056..103371072,-#_f2e3969318ba28fa34699d504acb3455p@chr1:103371056..103371072, -
5.73e-14FFCP PHASE2:Hg19::chr1:103371056..103371072,-#_f2e3969318ba28fa34699d504acb3455p@chr1:103371056..103371072, -
1.24e-13FFCP PHASE1:Hg19::chr6:35656232..35656237,-#_83eaf25e6f69206d233b9ca58256d554p@chr6:35656232..35656237, -
1.24e-13FFCP PHASE2:Hg19::chr6:35656232..35656237,-#_83eaf25e6f69206d233b9ca58256d554p@chr6:35656232..35656237, -
2.39e-13FFCP PHASE1:Hg19::chr3:79817162..79817175,-#_ee33659b5061542344a502814d5292bdp6@ROBO1
2.39e-13FFCP PHASE2:Hg19::chr3:79817162..79817175,-#_ee33659b5061542344a502814d5292bdp6@ROBO1
4.29e-13FFCP PHASE1:Hg19::chr10:96046777..96046788,-#_8895909f9c6bc35b6bf046e71f11461ap4@LOC100128054
4.29e-13FFCP PHASE2:Hg19::chr10:96046777..96046788,-#_8895909f9c6bc35b6bf046e71f11461ap4@LOC100128054
5.81e-13FFCP PHASE2:Hg19::chr4:86705464..86705469,+#_0d6bb0de9204df4fcdc358f3cbeb43eep@chr4:86705464..86705469, +
5.81e-13FFCP PHASE1:Hg19::chr4:86705464..86705469,+#_0d6bb0de9204df4fcdc358f3cbeb43eep@chr4:86705464..86705469, +
5.85e-13FFCP PHASE1:Hg19::chr11:61568644..61568661,-#_072df91773fc208f83fd39b10776954cp17@FADS1
5.85e-13FFCP PHASE2:Hg19::chr11:61568644..61568661,-#_072df91773fc208f83fd39b10776954cp17@FADS1
8.13e-13FFCP PHASE1:Hg19::chr5:30104120..30104173,-#_511dc067d9f0300bf7b1d18003a2c0d7p@chr5:30104120..30104173, -
8.13e-13FFCP PHASE2:Hg19::chr5:30104120..30104173,-#_511dc067d9f0300bf7b1d18003a2c0d7p@chr5:30104120..30104173, -
1.26e-12FFCP PHASE2:Hg19::chr4:169706237..169706242,+#_b97480e5553d4ee9f4388f5b3c154f2ep@chr4:169706237..169706242, +
1.26e-12FFCP PHASE1:Hg19::chr4:169706237..169706242,+#_b97480e5553d4ee9f4388f5b3c154f2ep@chr4:169706237..169706242, +
2.07e-12FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_8c95cd78c87ada4baf945d48f2b42effp@chr3:146517344..146517356, +
2.07e-12FFCP PHASE2:Hg19::chr5:30104096..30104103,-#_8c95cd78c87ada4baf945d48f2b42effp@chr5:30104096..30104103, -
2.07e-12FFCP PHASE1:Hg19::chr5:30104096..30104103,-#_8c95cd78c87ada4baf945d48f2b42effp@chr5:30104096..30104103, -
2.07e-12FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_8c95cd78c87ada4baf945d48f2b42effp@chr3:146517344..146517356, +
2.31e-12FFCP PHASE2:Hg19::chr5:149532703..149532711,+#_fe86f9904bc21c7cfc68c67ea3a240e8p@chr5:149532703..149532711, +
2.31e-12FFCP PHASE1:Hg19::chr11:60615014..60615025,+#_fe86f9904bc21c7cfc68c67ea3a240e8p8@CCDC86
2.31e-12FFCP PHASE1:Hg19::chr5:149532703..149532711,+#_fe86f9904bc21c7cfc68c67ea3a240e8p@chr5:149532703..149532711, +
2.31e-12FFCP PHASE2:Hg19::chr11:60615014..60615025,+#_fe86f9904bc21c7cfc68c67ea3a240e8p8@CCDC86
2.59e-12FFCP PHASE1:Hg19::chr17:19282079..19282094,+#_ef72c81d6acd5030c1cc8019efd62921p14@MAPK7
2.59e-12FFCP PHASE1:Hg19::chr6:135196569..135196573,-#_ef72c81d6acd5030c1cc8019efd62921p@chr6:135196569..135196573, -
2.59e-12FFCP PHASE2:Hg19::chr17:19282079..19282094,+#_ef72c81d6acd5030c1cc8019efd62921p14@MAPK7
2.59e-12FFCP PHASE2:Hg19::chr6:135196569..135196573,-#_ef72c81d6acd5030c1cc8019efd62921p@chr6:135196569..135196573, -
2.89e-12FFCP PHASE1:Hg19::chr14:61654180..61654191,+#_37fc8f7c74aeca556f7d1327e3d2e076p33@PRKCH
2.89e-12FFCP PHASE1:Hg19::chr4:178083004..178083050,-#_37fc8f7c74aeca556f7d1327e3d2e076p@chr4:178083004..178083050, -
2.89e-12FFCP PHASE2:Hg19::chr14:61654180..61654191,+#_37fc8f7c74aeca556f7d1327e3d2e076p33@PRKCH
2.89e-12FFCP PHASE1:Hg19::chr5:17604288..17604293,+#_37fc8f7c74aeca556f7d1327e3d2e076p@chr5:17604288..17604293, +
2.89e-12FFCP PHASE2:Hg19::chr4:178083004..178083050,-#_37fc8f7c74aeca556f7d1327e3d2e076p@chr4:178083004..178083050, -
2.89e-12FFCP PHASE1:Hg19::chr3:147121835..147121852,-#_37fc8f7c74aeca556f7d1327e3d2e076p9@ZIC4
2.89e-12FFCP PHASE2:Hg19::chr3:147121835..147121852,-#_37fc8f7c74aeca556f7d1327e3d2e076p9@ZIC4
2.89e-12FFCP PHASE2:Hg19::chr5:17604288..17604293,+#_37fc8f7c74aeca556f7d1327e3d2e076p@chr5:17604288..17604293, +
3.24e-12FFCP PHASE1:Hg19::chr11:9879819..9879831,-#_750cb62f3db0ba7e3d118a5986aa0585p@chr11:9879819..9879831, -
3.24e-12FFCP PHASE2:Hg19::chr11:9879819..9879831,-#_750cb62f3db0ba7e3d118a5986aa0585p@chr11:9879819..9879831, -
3.24e-12FFCP PHASE1:Hg19::chr14:85705824..85705844,-#_750cb62f3db0ba7e3d118a5986aa0585p1@ENST00000556016
3.24e-12FFCP PHASE2:Hg19::chr14:85705824..85705844,-#_750cb62f3db0ba7e3d118a5986aa0585p1@ENST00000556016
5.51e-12FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_de41d7ea6e19c0f74cff610a5f27c8d3p17@CTGF
5.51e-12FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_de41d7ea6e19c0f74cff610a5f27c8d3p17@CTGF
1.31e-11FFCP PHASE2:Hg19::chr11:111685389..111685410,-#_cda99bb4c14d90c8b27000fd0ec535aep7@ALG9
1.31e-11FFCP PHASE1:Hg19::chr11:111685389..111685410,-#_cda99bb4c14d90c8b27000fd0ec535aep7@ALG9
1.57e-11FFCP PHASE2:Hg19::chr2:51577311..51577340,-#_abda4caeb71eca55608759c4ccb5dd26p@chr2:51577311..51577340, -
1.57e-11FFCP PHASE1:Hg19::chr2:51577311..51577340,-#_abda4caeb71eca55608759c4ccb5dd26p@chr2:51577311..51577340, -
1.59e-11FFCP PHASE1:Hg19::chr10:96046756..96046775,-#_edba3975527e76497abcca2cf551ba17p2@LOC100128054
1.59e-11FFCP PHASE2:Hg19::chr10:96046756..96046775,-#_edba3975527e76497abcca2cf551ba17p2@LOC100128054

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