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{{UBERON
{{UBERON
|id=UBERON:0000203
|alt_id=
|name=pallium
|namespace=
|def="Dorsal part (roof region) of the telencephalon[GO]." [GO:0021543, https://sourceforge.net/tracker/?func=detail&aid=3535324&group_id=76834&atid=994726, ISBN10:0471888893, Wikipedia:Pallium_(neuroanatomy)]
|xref=SCTID:369224000;;TAO:0000505;;TAO:0007007;;ZFA:0000505;;ZFA:0007007
|is_a=UBERON:0003528
|synonym="area dorsalis telencephali" EXACT [ZFA:0000505];;"dorsal part of telencephalon" EXACT [ISBN10:0471888893];;"dorsal telencephalic area" EXACT [ZFA:0000505];;"dorsal telencephalon" EXACT [ZFA:0000505]
|comment=Taxon notes: In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus[WP]
|comment=Taxon notes: In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus[WP]
|alt_id=
|disjoint_from=
|union_of=
|created_by=cjm
|created_by=cjm
|obo_creation_date=2009-04-18T12:03:09Z
|def="Dorsal part (roof region) of the telencephalon[GO]." [GO:0021543, https://sourceforge.net/tracker/?func
|subset=developmental_classification
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000203
|is_a=UBERON:0002791
|is_obsolete=
|located_in=
|located_in=
|name=pallium
|namespace=
|obo_creation_date=2009-04-18T12:03:09Z
|part_of=UBERON:0001893
|part_of=UBERON:0001893
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The mantle of gray matter forming the cerebral cortex. http://www.thefreedictionary.com/pallium[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The mantle of gray matter forming the cerebral cortex. http://www.thefreedictionary.com/pallium[TAO]" xsd:string
|is_obsolete=
|subset=developmental_classification
|preceded_by=
|synonym="area dorsalis telencephali" EXACT [ZFA:0000505];;"dorsal part of telencephalon" EXACT [ISBN10:0471888893];;"dorsal telencephalic area" EXACT [ZFA:0000505];;"dorsal telencephalon" EXACT [ZFA:0000505]
|union_of=
|xref=SCTID:369224000;;TAO:0000505;;TAO:0007007;;ZFA:0000505;;ZFA:0007007
}}
}}

Revision as of 10:53, 12 September 2014

Name:pallium
Definition:"Dorsal part (roof region) of the telencephalon[GO]." [GO:0021543, https://sourceforge.net/tracker/?func
Xrefs:
links:

SCTID:369224000
TAO:0000505
TAO:0007007
ZFA:0000505

ZFA:0007007
Synonyms: "area dorsalis telencephali" EXACT [ZFA:0000505]
"dorsal part of telencephalon" EXACT [ISBN10:0471888893]
"dorsal telencephalic area" EXACT [ZFA:0000505]
"dorsal telencephalon" EXACT [ZFA:0000505]
Comments:Taxon notes: In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus[WP]
Subset: developmental_classification
Created by:cjm
Creation date:2009-04-18T12:03:09Z

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002791(regional part of telencephalon)
part_of:UBERON:0001893(telencephalon)



Children

part of:UBERON:0000956 (cerebral cortex),UBERON:0002421 (hippocampal formation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000203 (pallium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.52e-129FFCP PHASE1:Hg19::chr10:11047712..11047726,+#_b1ee23baa05af00f0392ea685092ff56p@chr10:11047712..11047726, +
1.52e-129FFCP PHASE2:Hg19::chr10:11047712..11047726,+#_b1ee23baa05af00f0392ea685092ff56p@chr10:11047712..11047726, +
1.72e-126FFCP PHASE1:Hg19::chr8:89554929..89554960,+#_6fa737de37c61bdd76ddc35ef1ddea93p1@ENST00000518631
1.72e-126FFCP PHASE2:Hg19::chr8:89554929..89554960,+#_6fa737de37c61bdd76ddc35ef1ddea93p1@ENST00000518631
2.83e-119FFCP PHASE2:Hg19::chr10:10504250..10504278,+#_52b821af9f4dfc810e72e039955fe2bbp@chr10:10504250..10504278, +
2.83e-119FFCP PHASE1:Hg19::chr10:10504250..10504278,+#_52b821af9f4dfc810e72e039955fe2bbp@chr10:10504250..10504278, +
4.39e-119FFCP PHASE2:Hg19::chr18:70305745..70305761,-#_81ad79f2cd34c289de0293ae334511f2p@chr18:70305745..70305761, -
4.39e-119FFCP PHASE1:Hg19::chr18:70305745..70305761,-#_81ad79f2cd34c289de0293ae334511f2p@chr18:70305745..70305761, -
1.91e-117FFCP PHASE1:Hg19::chr18:70305621..70305634,-#_88aa4df41375027c04a22c2313291133p@chr18:70305621..70305634, -
1.91e-117FFCP PHASE2:Hg19::chr18:70305621..70305634,-#_88aa4df41375027c04a22c2313291133p@chr18:70305621..70305634, -
2.42e-117FFCP PHASE2:Hg19::chr22:43821065..43821115,+#_987d9a792e0dd9f3223f44b8d855c7fbp4@MPPED1
2.42e-117FFCP PHASE1:Hg19::chr22:43821065..43821115,+#_987d9a792e0dd9f3223f44b8d855c7fbp4@MPPED1
2.3e-113FFCP PHASE1:Hg19::chr10:11047746..11047768,+#_6aa5d5056a1f2f5fbdc9518a23ccb64ap@chr10:11047746..11047768, +
2.3e-113FFCP PHASE2:Hg19::chr10:11047746..11047768,+#_6aa5d5056a1f2f5fbdc9518a23ccb64ap@chr10:11047746..11047768, +
4.95e-111FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_19d855df0af42098d062b3eb1cfd3f06p@chr19:54462560..54462571, +
4.95e-111FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_19d855df0af42098d062b3eb1cfd3f06p@chr19:54462560..54462571, +
2.54e-110FFCP PHASE1:Hg19::chr10:11046599..11046616,+#_7a272b540c266124b181175ad8647e5bp@chr10:11046599..11046616, +
2.54e-110FFCP PHASE2:Hg19::chr10:11046599..11046616,+#_7a272b540c266124b181175ad8647e5bp@chr10:11046599..11046616, +
6.85e-110FFCP PHASE2:Hg19::chr8:110987986..110988010,-#_f7c6c80f7d0d0f48a61ead6be8dce4dep1@KCNV1
6.85e-110FFCP PHASE1:Hg19::chr8:110987986..110988010,-#_f7c6c80f7d0d0f48a61ead6be8dce4dep1@KCNV1
8.08e-110FFCP PHASE1:Hg19::chr5:17404114..17404134,+#_fc414b5c220cdd64b13f7923fcf2090bp1@ENST00000508677
8.08e-110FFCP PHASE2:Hg19::chr5:17404114..17404134,+#_fc414b5c220cdd64b13f7923fcf2090bp1@ENST00000508677
1.16e-109FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_970c90d6667843c4386d8c310eb8bf1bp8@OPCML
1.16e-109FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_970c90d6667843c4386d8c310eb8bf1bp8@OPCML
6.25e-109FFCP PHASE1:Hg19::chr14:70546905..70546935,-#_c4bad000a0f6fb501de264c53a431106p3@SLC8A3
6.25e-109FFCP PHASE2:Hg19::chr14:70546905..70546935,-#_c4bad000a0f6fb501de264c53a431106p3@SLC8A3
4.02e-108FFCP PHASE1:Hg19::chr16:758668..758696,+#_58fc48c119de4388b9ae053ce3f163fep@chr16:758668..758696, +
4.02e-108FFCP PHASE2:Hg19::chr16:758668..758696,+#_58fc48c119de4388b9ae053ce3f163fep@chr16:758668..758696, +
5.1e-108FFCP PHASE2:Hg19::chr5:22754690..22754720,+#_eccae2fb1c499f26609fb3f8efa9f7bcp@chr5:22754690..22754720, +
5.1e-108FFCP PHASE1:Hg19::chr5:22754690..22754720,+#_eccae2fb1c499f26609fb3f8efa9f7bcp@chr5:22754690..22754720, +
5.75e-108FFCP PHASE2:Hg19::chr8:67405573..67405590,+#_843f8b7829722b7366d8d70b2fe6f7a3p7@C8orf46
5.75e-108FFCP PHASE1:Hg19::chr8:67405573..67405590,+#_843f8b7829722b7366d8d70b2fe6f7a3p7@C8orf46
1.84e-107FFCP PHASE2:Hg19::chr9:10612907..10612918,-#_583b41b04d587c3c4a7dd14bd9e3a6cdp17@PTPRD
1.84e-107FFCP PHASE1:Hg19::chr9:10612907..10612918,-#_583b41b04d587c3c4a7dd14bd9e3a6cdp17@PTPRD
6.72e-107FFCP PHASE1:Hg19::chr12:62585176..62585196,-#_2fb603422847105f1a9d6a014715f6e2p14@FAM19A2
6.72e-107FFCP PHASE2:Hg19::chr12:62585176..62585196,-#_2fb603422847105f1a9d6a014715f6e2p14@FAM19A2
8.42e-107FFCP PHASE2:Hg19::chr18:70305699..70305738,-#_f156e157ed0ff2fc6625ce58171cb12ep@chr18:70305699..70305738, -
8.42e-107FFCP PHASE1:Hg19::chr18:70305699..70305738,-#_f156e157ed0ff2fc6625ce58171cb12ep@chr18:70305699..70305738, -
1.04e-106FFCP PHASE1:Hg19::chr10:11047633..11047685,+#_910593b8b22dfa8bcbffee96806cd071p@chr10:11047633..11047685, +
1.04e-106FFCP PHASE2:Hg19::chr10:11047633..11047685,+#_910593b8b22dfa8bcbffee96806cd071p@chr10:11047633..11047685, +
1.12e-106FFCP PHASE1:Hg19::chr6:160311995..160312034,+#_04a3dd95ee5de46c61464ae0586fa83ep@chr6:160311995..160312034, +
1.12e-106FFCP PHASE2:Hg19::chr6:160311995..160312034,+#_04a3dd95ee5de46c61464ae0586fa83ep@chr6:160311995..160312034, +
2.02e-106FFCP PHASE2:Hg19::chr11:133402347..133402360,-#_b9bf7e0bb565017a805d97bbc4fa78b0p6@OPCML
2.02e-106FFCP PHASE1:Hg19::chr11:133402347..133402360,-#_b9bf7e0bb565017a805d97bbc4fa78b0p6@OPCML
2.02e-106FFCP PHASE2:Hg19::chr12:87232669..87232696,-#_b9bf7e0bb565017a805d97bbc4fa78b0p6@MGAT4C
2.02e-106FFCP PHASE1:Hg19::chr12:87232669..87232696,-#_b9bf7e0bb565017a805d97bbc4fa78b0p6@MGAT4C
6.73e-106FFCP PHASE1:Hg19::chr8:110986427..110986445,-#_5dac8ca5d0bb2d306f474b95391c2437p4@KCNV1
6.73e-106FFCP PHASE2:Hg19::chr8:110986427..110986445,-#_5dac8ca5d0bb2d306f474b95391c2437p4@KCNV1
1.11e-105FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_22b0e451c1a3c244ea019f40941e8b3fp3@PDYN
1.11e-105FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_22b0e451c1a3c244ea019f40941e8b3fp3@PDYN
1.34e-105FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_f170315fc9a2df417b8f89cfac5cdf59p1@ENST00000511849
1.34e-105FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_f170315fc9a2df417b8f89cfac5cdf59p1@ENST00000511849
1.34e-105FFCP PHASE1:Hg19::chr4:39064313..39064326,+#_f170315fc9a2df417b8f89cfac5cdf59p7@KLHL5
1.34e-105FFCP PHASE2:Hg19::chr4:39064313..39064326,+#_f170315fc9a2df417b8f89cfac5cdf59p7@KLHL5
2.69e-105FFCP PHASE2:Hg19::chr6:12718426..12718446,+#_2fafdb2e8dc0086b5ca415592b5c4104p24@PHACTR1
2.69e-105FFCP PHASE1:Hg19::chr6:12718426..12718446,+#_2fafdb2e8dc0086b5ca415592b5c4104p24@PHACTR1
4.19e-104FFCP PHASE2:Hg19::chr15:30231269..30231299,-#_c4ed12cb62995a849427f7982d3d1298p@chr15:30231269..30231299, -
4.19e-104FFCP PHASE1:Hg19::chr15:30231269..30231299,-#_c4ed12cb62995a849427f7982d3d1298p@chr15:30231269..30231299, -
5.28e-104FFCP PHASE2:Hg19::chr11:45564023..45564028,-#_b4218ccbad60972e4e7ca6aed05dccd7p1@ENST00000525855, p1@ENST00000527642, p1@ENST00000533315
5.28e-104FFCP PHASE1:Hg19::chr11:45564023..45564028,-#_b4218ccbad60972e4e7ca6aed05dccd7p1@ENST00000525855, p1@ENST00000527642, p1@ENST00000533315
1.57e-103FFCP PHASE2:Hg19::chr10:116852602..116852626,+#_8f15b2b1ec5f4d42721081fb6afb07e0p5@ATRNL1
1.57e-103FFCP PHASE1:Hg19::chr10:116852602..116852626,+#_8f15b2b1ec5f4d42721081fb6afb07e0p5@ATRNL1
2.22e-103FFCP PHASE1:Hg19::chr5:94621232..94621256,-#_38f459ef227856762da6f435e63027ecp@chr5:94621232..94621256, -
2.22e-103FFCP PHASE2:Hg19::chr5:94621232..94621256,-#_38f459ef227856762da6f435e63027ecp@chr5:94621232..94621256, -
2.73e-103FFCP PHASE1:Hg19::chr3:62359214..62359232,-#_e47e1b0f40afc42c09efc32f844ba388p1@FEZF2
2.73e-103FFCP PHASE2:Hg19::chr3:62359214..62359232,-#_e47e1b0f40afc42c09efc32f844ba388p1@FEZF2
3.26e-103FFCP PHASE1:Hg19::chr2:136343886..136343897,+#_4a7600cce4d7a5f40c49b9c6f149586bp4@R3HDM1
3.26e-103FFCP PHASE2:Hg19::chr2:136343886..136343897,+#_4a7600cce4d7a5f40c49b9c6f149586bp4@R3HDM1
1.5e-102FFCP PHASE1:Hg19::chr2:10508688..10508712,+#_65c762bb6a00b17a9053d20c8530ffe3p8@HPCAL1
1.5e-102FFCP PHASE2:Hg19::chr2:10508688..10508712,+#_65c762bb6a00b17a9053d20c8530ffe3p8@HPCAL1
2.05e-102FFCP PHASE2:Hg19::chr12:122794425..122794445,-#_a8074b1843b3449fd20cae30dfc0d012p@chr12:122794425..122794445, -
2.05e-102FFCP PHASE1:Hg19::chr12:122794425..122794445,-#_a8074b1843b3449fd20cae30dfc0d012p@chr12:122794425..122794445, -
3.64e-102FFCP PHASE1:Hg19::chr17:37764312..37764326,-#_258bf7c962d4e0ae6a4ae598086f2ee4p2@NEUROD2
3.64e-102FFCP PHASE2:Hg19::chr17:37764312..37764326,-#_258bf7c962d4e0ae6a4ae598086f2ee4p2@NEUROD2
4.48e-102FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_35588b283ece3752fd9078d042e0f2a0p3@GRIN2B
4.48e-102FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_35588b283ece3752fd9078d042e0f2a0p3@GRIN2B
1.95e-101FFCP PHASE2:Hg19::chr16:758701..758727,+#_8055984f1d9022f6688f71d4948c7608p@chr16:758701..758727, +
1.95e-101FFCP PHASE1:Hg19::chr16:758701..758727,+#_8055984f1d9022f6688f71d4948c7608p@chr16:758701..758727, +
5.99e-101FFCP PHASE1:Hg19::chr1:177134348..177134360,-#_338d80b51b826d86c4016041f971239fp10@ASTN1
5.99e-101FFCP PHASE2:Hg19::chr1:177134348..177134360,-#_338d80b51b826d86c4016041f971239fp10@ASTN1
6.35e-101FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_a2bedb971a632eaa15287f68ab12f7e1p@chr5:80255907..80255942, +
6.35e-101FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_a2bedb971a632eaa15287f68ab12f7e1p@chr5:80255907..80255942, +
8.54e-101FFCP PHASE1:Hg19::chr11:84431459..84431498,-#_34c5a67755527b29274d610eb03299ecp@chr11:84431459..84431498, -
8.54e-101FFCP PHASE2:Hg19::chr11:84431459..84431498,-#_34c5a67755527b29274d610eb03299ecp@chr11:84431459..84431498, -
1.54e-100FFCP PHASE1:Hg19::chr17:36757284..36757327,+#_ca36061c2e31be8ebe295c9027c7d8edp@chr17:36757284..36757327, +
1.54e-100FFCP PHASE2:Hg19::chr17:36757284..36757327,+#_ca36061c2e31be8ebe295c9027c7d8edp@chr17:36757284..36757327, +
1.94e-100FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_4a489b4be338c21229f720d6dfdf00efp9@PPP2R2C
1.94e-100FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_4a489b4be338c21229f720d6dfdf00efp9@PPP2R2C
5.35e-100FFCP PHASE2:Hg19::chr1:50575292..50575326,+#_23cc23fb5f414f28a07f8e7bddd235dbp8@ELAVL4
5.35e-100FFCP PHASE1:Hg19::chr1:50575292..50575326,+#_23cc23fb5f414f28a07f8e7bddd235dbp8@ELAVL4
5.71e-100FFCP PHASE1:Hg19::chr10:14372834..14372846,-#_450bdc484fd416b684a4d6c7e7a38778p12@FRMD4A
5.71e-100FFCP PHASE2:Hg19::chr10:14372834..14372846,-#_450bdc484fd416b684a4d6c7e7a38778p12@FRMD4A
7.95e-100FFCP PHASE2:Hg19::chr5:56910048..56910074,+#_7d8384390a506c2efb1d77bfac2ac505p1@ENST00000509844
7.95e-100FFCP PHASE1:Hg19::chr5:56910048..56910074,+#_7d8384390a506c2efb1d77bfac2ac505p1@ENST00000509844
9.35e-100FFCP PHASE2:Hg19::chr6:53976259..53976270,+#_32ff792735ae35d4fe00832ae15476ecp5@MLIP
9.35e-100FFCP PHASE1:Hg19::chr6:53976259..53976270,+#_32ff792735ae35d4fe00832ae15476ecp5@MLIP
1.13e-99FFCP PHASE2:Hg19::chr6:98264571..98264591,+#_fb19010ac2c37cd865725e3b1b2bdf83p@chr6:98264571..98264591, +
1.13e-99FFCP PHASE1:Hg19::chr6:98264571..98264591,+#_fb19010ac2c37cd865725e3b1b2bdf83p@chr6:98264571..98264591, +
2.26e-99FFCP PHASE2:Hg19::chr5:63256975..63257005,-#_5669d3199b21bd040288aa73ac695b3ep1@HTR1A
2.26e-99FFCP PHASE1:Hg19::chr5:63256975..63257005,-#_5669d3199b21bd040288aa73ac695b3ep1@HTR1A










Property "Property value" (as page type) with input value "UBPROP:0000001 "The mantle of gray matter forming the cerebral cortex. http://www.thefreedictionary.com/pallium[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000203&oldid=3273769"