Personal tools

UBERON:0004211: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004211
|alt_id=
|name=nephron epithelium
|namespace=
|def="The nephron epithelium is a tissue that covers the surface of a nephron" [GO:0072088]
|xref=
|is_a=UBERON:0004819
|synonym="epithelial tissue of nephron" EXACT [OBOL:automatic];;"epithelium of nephron" EXACT [OBOL:automatic];;"nephron epithelial tissue" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The nephron epithelium is a tissue that covers the surface of a nephron" [GO:0072088]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004211
|is_a=UBERON:0004819
|is_obsolete=
|located_in=
|located_in=
|name=nephron epithelium
|namespace=
|obo_creation_date=
|part_of=UBERON:0001285
|part_of=UBERON:0001285
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelial tissue of nephron" EXACT [OBOL:automatic];;"epithelium of nephron" EXACT [OBOL:automatic];;"nephron epithelial tissue" EXACT [OBOL:automatic]
|union_of=
|xref=
}}
}}

Revision as of 11:28, 12 September 2014

Name:nephron epithelium
Definition:"The nephron epithelium is a tissue that covers the surface of a nephron" [GO:0072088]
Synonyms: "epithelial tissue of nephron" EXACT [OBOL:automatic]
"epithelium of nephron" EXACT [OBOL:automatic]
"nephron epithelial tissue" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004819(kidney epithelium)
part_of:UBERON:0001285(nephron)



Children

is a:UBERON:0001231 (nephron tubule),UBERON:0004810 (nephron tubule epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004211 (nephron epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.05e-87FFCP PHASE1:Hg19::chr2:693380..693398,+#_dc73b98f3f56766cbeed91be69a94aadp@chr2:693380..693398, +
1.05e-87FFCP PHASE2:Hg19::chr2:693380..693398,+#_dc73b98f3f56766cbeed91be69a94aadp@chr2:693380..693398, +
1.72e-83FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_ff34f543908e139b84959deae9c80289p4@MEGF11
1.72e-83FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_ff34f543908e139b84959deae9c80289p4@MEGF11
2.2e-74FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_aef1096179e15329f990179e651f9897p7@HOXA10
2.2e-74FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_aef1096179e15329f990179e651f9897p7@HOXA10
7.63e-66FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_e282aec0b1769748574acc233fd84557p@chr1:1100457..1100470, +
7.63e-66FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_e282aec0b1769748574acc233fd84557p@chr1:1100457..1100470, +
6.44e-62FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_2085800c710a4b44a25011ed8e45a02cp4@PAX2
6.44e-62FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_2085800c710a4b44a25011ed8e45a02cp4@PAX2
5.84e-60FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_7bc8f37665601ba582c26dfd95f7e007p@chr18:3456189..3456200, +
5.84e-60FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_7bc8f37665601ba582c26dfd95f7e007p@chr18:3456189..3456200, +
6.18e-60FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_ed335e502407b041d7dc72856eef79b7p3@PAX2
6.18e-60FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_ed335e502407b041d7dc72856eef79b7p3@PAX2
4.45e-59FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_f26f27bba79a45b63a883bb3bf0cd3bdp6@LRRN4
4.45e-59FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_f26f27bba79a45b63a883bb3bf0cd3bdp6@LRRN4
3.49e-58FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_81bd9fbc76f2e210a51a8903c0f6a887p@chr5:74244100..74244117, +
3.49e-58FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_81bd9fbc76f2e210a51a8903c0f6a887p@chr5:74244100..74244117, +
3.91e-56FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_4f9e3776c37c314a4fab087b1d58e916p2@AB527789
3.91e-56FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_4f9e3776c37c314a4fab087b1d58e916p2@AB527789
3.83e-55FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_17ffbf3bac544a1b87017b9fa4df2cd6p@chr16:86604624..86604648, +
3.83e-55FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_17ffbf3bac544a1b87017b9fa4df2cd6p@chr16:86604624..86604648, +
3.51e-54FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_766aba9406259b02ab2fcaa060e83536p@chr16:86768403..86768437, +
3.51e-54FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_766aba9406259b02ab2fcaa060e83536p@chr16:86768403..86768437, +
6.09e-53FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_4f42b9d29be385b5189c1e251f7ae3efp2@CLDN6
6.09e-53FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_4f42b9d29be385b5189c1e251f7ae3efp2@CLDN6
2.79e-52FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_f6dcc1e67842b1aeb2afb26b61dedc51p1@ENST00000418041, p1@ENST00000443104
2.79e-52FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_f6dcc1e67842b1aeb2afb26b61dedc51p1@ENST00000418041, p1@ENST00000443104
1.61e-50FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_c87575b70031c87a9f02cd4296fa4f6fp@chr7:7606139..7606151, -
1.61e-50FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_c87575b70031c87a9f02cd4296fa4f6fp@chr7:7606139..7606151, -
1.96e-50FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_ce89ca06e2d00b266b264996d2d784fbp3@HNF1B
1.96e-50FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_ce89ca06e2d00b266b264996d2d784fbp3@HNF1B
1.73e-49FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_201a0d065f1af1b189b452fe3e261688p@chr7:140227349..140227360, -
1.73e-49FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_201a0d065f1af1b189b452fe3e261688p@chr7:140227349..140227360, -
2.61e-49FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_b649007d6d19db3eeea9fdbd47fee5f8p16@HOXA10
2.61e-49FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_b649007d6d19db3eeea9fdbd47fee5f8p16@HOXA10
3.13e-49FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_9199b7ca95abb45d764f1659a20bee5cp2@B3GALT5
3.13e-49FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_9199b7ca95abb45d764f1659a20bee5cp2@B3GALT5
4.07e-49FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_bb28f0e53255ddf1e34063138213715cp4@AIF1L
4.07e-49FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_bb28f0e53255ddf1e34063138213715cp4@AIF1L
1.12e-47FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_347e8e3978dc5620c2603c03c9874b24p@chr7:140227303..140227330, -
1.12e-47FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_347e8e3978dc5620c2603c03c9874b24p@chr7:140227303..140227330, -
1.23e-44FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_c657444025c22606ad35530a6778200ap3@LRRN4
1.23e-44FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_c657444025c22606ad35530a6778200ap3@LRRN4
3.62e-44FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_59af6cf53831edfefc609e62c83606c8p@chr21:46826248..46826282, -
3.62e-44FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_59af6cf53831edfefc609e62c83606c8p@chr21:46826248..46826282, -
3.06e-43FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_0b8eca4a6fc200d454444c8effc10e07p2@LRRN4
3.06e-43FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_0b8eca4a6fc200d454444c8effc10e07p2@LRRN4
1.81e-42FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_fb5870d05019a07cb850907487272ccep@chr15:85403302..85403304, +
1.81e-42FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_fb5870d05019a07cb850907487272ccep@chr15:85403302..85403304, +
1.82e-42FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_a732bd2521e8a0351b862a374c22cbeap@chr7:98453821..98453843, -
1.82e-42FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_a732bd2521e8a0351b862a374c22cbeap@chr7:98453821..98453843, -
2.77e-42FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_3bdcdc92bc01e340d90c4902221628a3p7@LRRN4
2.77e-42FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_3bdcdc92bc01e340d90c4902221628a3p7@LRRN4
7.5e-42FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_d73354abe3372d534d38a5f036f315aep2@PAX2
7.5e-42FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_d73354abe3372d534d38a5f036f315aep2@PAX2
3.59e-41FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_6feb4b3eca6b2ed7af99b89d845760c5p16@TJP2
3.59e-41FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_6feb4b3eca6b2ed7af99b89d845760c5p16@TJP2
9.39e-41FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_fea8d783c299797dfe5eb8f92eea353bp1@ENST00000413103
9.39e-41FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_fea8d783c299797dfe5eb8f92eea353bp1@ENST00000413103
1.7e-40FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_c74d69008eaccec27b6f43f53faf304cp5@LRRN4
1.7e-40FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_c74d69008eaccec27b6f43f53faf304cp5@LRRN4
2.9e-40FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_a82d722c151b6c738c6322683238f4b1p2@PLA2G2F
2.9e-40FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_a82d722c151b6c738c6322683238f4b1p2@PLA2G2F
8.58e-40FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_728a385779b5c8575132f07c1e4db865p3@AIF1L
8.58e-40FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_728a385779b5c8575132f07c1e4db865p3@AIF1L
1.21e-39FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_6bc14d7c830e7db361fc066a89d8cdb4p6@GALNT14
1.21e-39FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_6bc14d7c830e7db361fc066a89d8cdb4p6@GALNT14
3.08e-39FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_044b03d63b4cf79e1d205c37e774b636p4@AB527789
3.08e-39FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_044b03d63b4cf79e1d205c37e774b636p4@AB527789
7.42e-37FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_3a90e886d167cac797095ceed0e3d4f8p4@DCDC2
7.42e-37FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_3a90e886d167cac797095ceed0e3d4f8p4@DCDC2
1.29e-36FFCP PHASE1:Hg19::chr2:693362..693373,+#_12fe643de9ee15b28733e67075168fb6p@chr2:693362..693373, +
1.29e-36FFCP PHASE2:Hg19::chr2:693362..693373,+#_12fe643de9ee15b28733e67075168fb6p@chr2:693362..693373, +
1.36e-36FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_e522bf5910f3c52b56a49441020e01dbp1@HOXD4
1.36e-36FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_e522bf5910f3c52b56a49441020e01dbp1@HOXD4
6.21e-36FFCP PHASE1:Hg19::chr2:176982078..176982095,+#_514c2fa38d6ace72572409e0f7b4dc85p@chr2:176982078..176982095, +
6.21e-36FFCP PHASE2:Hg19::chr2:176982078..176982095,+#_514c2fa38d6ace72572409e0f7b4dc85p@chr2:176982078..176982095, +
2.64e-35FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_69a4e9b51726234c46ac35b4ca906f0fp1@AB527789
2.64e-35FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_69a4e9b51726234c46ac35b4ca906f0fp1@AB527789
3.85e-35FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_89926dd13d9cdd658dcedaaaa4d995a5p3@SULT1C4
3.85e-35FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_89926dd13d9cdd658dcedaaaa4d995a5p3@SULT1C4
8.14e-35FFCP PHASE1:Hg19::chr18:43405633..43405645,+#_fb2f8cc9343f35b53ccafd02df9d7114p4@SIGLEC15
8.14e-35FFCP PHASE2:Hg19::chr18:43405633..43405645,+#_fb2f8cc9343f35b53ccafd02df9d7114p4@SIGLEC15
1.65e-34FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_e69293fd8ed3d3a4ff62ddf6cce2f089p1@ENST00000444849
1.65e-34FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_e69293fd8ed3d3a4ff62ddf6cce2f089p1@ENST00000444849
1.14e-33FFCP PHASE1:Hg19::chr17:171147..171161,+#_df0dddd47308f21c841397f9d0127e69p@chr17:171147..171161, +
1.14e-33FFCP PHASE2:Hg19::chr17:171147..171161,+#_df0dddd47308f21c841397f9d0127e69p@chr17:171147..171161, +
1.52e-33FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_5e823c76f531a2118650b3755ba9184fp2@C14orf105
1.52e-33FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_5e823c76f531a2118650b3755ba9184fp2@C14orf105
1.8e-33FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_366ca64db59348f4acabb38d7ccca9afp5@GALNT14
1.8e-33FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_366ca64db59348f4acabb38d7ccca9afp5@GALNT14
2.35e-33FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_06f3dffaa7d05b9739d24bb0548a26d4p1@CLDN16
2.35e-33FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_06f3dffaa7d05b9739d24bb0548a26d4p1@CLDN16
4.12e-33FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_ea48e9c43a8057b8aec3f364e1f4c56bp@chr17:36065029..36065045, -
4.12e-33FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_ea48e9c43a8057b8aec3f364e1f4c56bp@chr17:36065029..36065045, -
8.12e-33FFCP PHASE1:Hg19::chr17:35293950..35293973,-#_1b86d29d26a38c3a58be6ecc554e7b3dp1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387
8.12e-33FFCP PHASE2:Hg19::chr17:35293950..35293973,-#_1b86d29d26a38c3a58be6ecc554e7b3dp1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387
1.25e-32FFCP PHASE2:Hg19::chr22:30653574..30653606,-#_1e60368f60ace6291edccb8b0d98778ep@chr22:30653574..30653606, -
1.25e-32FFCP PHASE1:Hg19::chr22:30653574..30653606,-#_1e60368f60ace6291edccb8b0d98778ep@chr22:30653574..30653606, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004211&oldid=3274320"