Personal tools

UBERON:0005297: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005297
|alt_id=
|name=testis sex cord
|namespace=
|def="The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords]
|xref=EHDAA2:0002011;;EHDAA:8152;;EMAPA:29098;;VHOG:0001321
|is_a=UBERON:0004910;;UBERON:0005295
|synonym="primary sex cord" RELATED [];;"testis cord" EXACT [MP:0006424];;"testis primary sex cords" EXACT [EHDAA2:0002011];;"testis primitive sex cord" RELATED []
|comment=check primary vs testis
|comment=check primary vs testis
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0010141
|develops_from=UBERON:0010141
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005297
|is_a=UBERON:0004910 ;;UBERON:0005295
|is_obsolete=
|located_in=
|located_in=
|name=testis sex cord
|namespace=
|obo_creation_date=
|part_of=UBERON:0000473
|part_of=UBERON:0000473
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="primary sex cord" RELATED [];;"testis cord" EXACT [MP:0006424];;"testis primary sex cords" EXACT [EHDAA2:0002011];;"testis primitive sex cord" RELATED []
|union_of=
|xref=EHDAA2:0002011;;EHDAA:8152;;EMAPA:29098;;VHOG:0001321
}}
}}

Revision as of 11:35, 12 September 2014

Name:testis sex cord
Definition:"The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords]
Xrefs:
links:

EHDAA2:0002011
EHDAA:8152
EMAPA:29098

VHOG:0001321
Synonyms: "primary sex cord" RELATED []
"testis cord" EXACT [MP:0006424]
"testis primary sex cords" EXACT [EHDAA2:0002011]
"testis primitive sex cord" RELATED []
Comments:check primary vs testis

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004910(epithelium of male gonad),UBERON:0005295(sex cord)
develops_from:UBERON:0010141(primitive sex cord of indifferent gonad)
part_of:UBERON:0000473(testis)



Children

develops from:UBERON:0001343 (seminiferous tubule of testis)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005297 (testis sex cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_87e1e8b2ba9c67f5b5f3acbc2a9b5229p26@BDNF
5.42e-195FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_87e1e8b2ba9c67f5b5f3acbc2a9b5229p26@BDNF
9.37e-99FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_2c848ec2f811fd3e84fc74923eb39228p43@CDC42BPA
9.37e-99FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_2c848ec2f811fd3e84fc74923eb39228p9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_2c848ec2f811fd3e84fc74923eb39228p9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_2c848ec2f811fd3e84fc74923eb39228p43@CDC42BPA
2.55e-98FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_02e89e2ae345893bfe1826e7a1121386p@chr19:40320572..40320586, -
2.55e-98FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_02e89e2ae345893bfe1826e7a1121386p@chr2:9519086..9519101, +
2.55e-98FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_02e89e2ae345893bfe1826e7a1121386p@chr3:193356854..193356864, +
2.55e-98FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_02e89e2ae345893bfe1826e7a1121386p@chr3:170430340..170430344, +
2.55e-98FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_02e89e2ae345893bfe1826e7a1121386p@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_02e89e2ae345893bfe1826e7a1121386p7@C7orf63
2.55e-98FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_02e89e2ae345893bfe1826e7a1121386p@chr8:69832864..69832865, +
2.55e-98FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_02e89e2ae345893bfe1826e7a1121386p@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_02e89e2ae345893bfe1826e7a1121386p@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_02e89e2ae345893bfe1826e7a1121386p@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_02e89e2ae345893bfe1826e7a1121386p@chr19:40320572..40320586, -
2.55e-98FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_02e89e2ae345893bfe1826e7a1121386p@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_02e89e2ae345893bfe1826e7a1121386p@chr7:18206831..18206833, +
2.55e-98FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_02e89e2ae345893bfe1826e7a1121386p@chr3:193356854..193356864, +
2.55e-98FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_02e89e2ae345893bfe1826e7a1121386p@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_02e89e2ae345893bfe1826e7a1121386p@chr3:170430340..170430344, +
2.55e-98FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_02e89e2ae345893bfe1826e7a1121386p@chr8:69832864..69832865, +
2.55e-98FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_02e89e2ae345893bfe1826e7a1121386p@chr2:9519086..9519101, +
2.55e-98FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_02e89e2ae345893bfe1826e7a1121386p7@C7orf63
2.55e-98FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_02e89e2ae345893bfe1826e7a1121386p@chr7:18206831..18206833, +
1.23e-66FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_b7c4e076d66128cecd58faeaa2eeb009p@chr2:19551668..19551679, -
1.23e-66FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_b7c4e076d66128cecd58faeaa2eeb009p@chr2:19551668..19551679, -
2.39e-66FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_1ce7dbe8b0ea85b0c229a490a9248f11p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_1ce7dbe8b0ea85b0c229a490a9248f11p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_1ce7dbe8b0ea85b0c229a490a9248f11p21@EPS8
2.39e-66FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_1ce7dbe8b0ea85b0c229a490a9248f11p21@EPS8
2.39e-66FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_1ce7dbe8b0ea85b0c229a490a9248f11p22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_1ce7dbe8b0ea85b0c229a490a9248f11p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_1ce7dbe8b0ea85b0c229a490a9248f11p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_1ce7dbe8b0ea85b0c229a490a9248f11p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_1ce7dbe8b0ea85b0c229a490a9248f11p22@TMEM130
2.39e-66FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_1ce7dbe8b0ea85b0c229a490a9248f11p@chr2:72803155..72803204, -
4.66e-66FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_533809c968bb2af477e5ef3f4a98db2fp4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_533809c968bb2af477e5ef3f4a98db2fp38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_533809c968bb2af477e5ef3f4a98db2fp@chr5:90830481..90830492, +
4.66e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_533809c968bb2af477e5ef3f4a98db2fp@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_533809c968bb2af477e5ef3f4a98db2fp@chr3:99984127..99984138, +
4.66e-66FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_533809c968bb2af477e5ef3f4a98db2fp4@GTPBP4
4.66e-66FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_533809c968bb2af477e5ef3f4a98db2fp@chr5:90830481..90830492, +
4.66e-66FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_533809c968bb2af477e5ef3f4a98db2fp@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_533809c968bb2af477e5ef3f4a98db2fp@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_533809c968bb2af477e5ef3f4a98db2fp@chr21:48080873..48080878, +
4.66e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_533809c968bb2af477e5ef3f4a98db2fp38@PTK2
4.66e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_533809c968bb2af477e5ef3f4a98db2fp@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_533809c968bb2af477e5ef3f4a98db2fp@chr3:99984127..99984138, +
4.66e-66FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_533809c968bb2af477e5ef3f4a98db2fp@chr3:170916991..170916995, -
6.41e-58FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_30416e606338bad67b34b7a42ee0f4a6p4@Spink12
6.41e-58FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_30416e606338bad67b34b7a42ee0f4a6p4@Spink12
1.46e-50FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_9fa0e3e54a492b1916e1ab0b1476f91fp@chr2:177009137..177009140, +
1.46e-50FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_9fa0e3e54a492b1916e1ab0b1476f91fp8@TCF21
1.46e-50FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_9fa0e3e54a492b1916e1ab0b1476f91fp8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_9fa0e3e54a492b1916e1ab0b1476f91fp@chr2:177009137..177009140, +
1.46e-50FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_9fa0e3e54a492b1916e1ab0b1476f91fp@chr11:114173606..114173612, +
1.46e-50FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_9fa0e3e54a492b1916e1ab0b1476f91fp@chr11:114173606..114173612, +
2.42e-50FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_0b16ad061bde10557ede4f8de44a078ep@chr3:46477553..46477563, -
2.42e-50FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_0b16ad061bde10557ede4f8de44a078ep@chr5:144875561..144875565, +
2.42e-50FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_0b16ad061bde10557ede4f8de44a078ep32@CREB3L2
2.42e-50FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_0b16ad061bde10557ede4f8de44a078ep31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_0b16ad061bde10557ede4f8de44a078ep@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_0b16ad061bde10557ede4f8de44a078ep32@CREB3L2
2.42e-50FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_0b16ad061bde10557ede4f8de44a078ep11@USP25
2.42e-50FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_0b16ad061bde10557ede4f8de44a078ep6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_0b16ad061bde10557ede4f8de44a078ep@chr3:46477553..46477563, -
2.42e-50FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_0b16ad061bde10557ede4f8de44a078ep31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_0b16ad061bde10557ede4f8de44a078ep11@USP25
2.42e-50FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_0b16ad061bde10557ede4f8de44a078ep6@C2orf63
2.42e-50FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_0b16ad061bde10557ede4f8de44a078ep@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_0b16ad061bde10557ede4f8de44a078ep@chr15:39288691..39288698, +
3.99e-50FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_7a0390d7aaab3e96de7b11f3b157f105p@chr4:103969123..103969127, -
3.99e-50FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_7a0390d7aaab3e96de7b11f3b157f105p@chr12:5198350..5198359, +
3.99e-50FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_7a0390d7aaab3e96de7b11f3b157f105p@chr12:5198350..5198359, +
3.99e-50FFCP PHASE1:Hg19::chr11:829412..829430,+#_7a0390d7aaab3e96de7b11f3b157f105p11@EFCAB4A
3.99e-50FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_7a0390d7aaab3e96de7b11f3b157f105p10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_7a0390d7aaab3e96de7b11f3b157f105p@chr15:39420650..39420666, +
3.99e-50FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_7a0390d7aaab3e96de7b11f3b157f105p@chr15:39420650..39420666, +
3.99e-50FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_7a0390d7aaab3e96de7b11f3b157f105p10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr11:829412..829430,+#_7a0390d7aaab3e96de7b11f3b157f105p11@EFCAB4A
3.99e-50FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_7a0390d7aaab3e96de7b11f3b157f105p@chr4:103969123..103969127, -
6.58e-50FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_14be21abe318274a8184bce751aa1a15p1@LOC645638
6.58e-50FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_14be21abe318274a8184bce751aa1a15p3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_14be21abe318274a8184bce751aa1a15p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_14be21abe318274a8184bce751aa1a15p13@SOS2
6.58e-50FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_14be21abe318274a8184bce751aa1a15p13@SOS2
6.58e-50FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_14be21abe318274a8184bce751aa1a15p1@LOC645638
6.58e-50FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_14be21abe318274a8184bce751aa1a15p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_14be21abe318274a8184bce751aa1a15p3@CACNA1H
4.52e-44FFCP PHASE1:Mm9::chr17:75581992..75582009,+#_0ff38299243207f8aca52774a39d2607p@chr17:75581992..75582009, +
4.52e-44FFCP PHASE2:Mm9::chr17:75581992..75582009,+#_0ff38299243207f8aca52774a39d2607p@chr17:75581992..75582009, +
6.62e-41FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_abc4f84780d2988fed287c5f6879aed0p@chr3:194214959..194214968, -
6.62e-41FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_abc4f84780d2988fed287c5f6879aed0p@chr3:194214959..194214968, -
9.91e-41FFCP PHASE2:Hg19::chr8:125193673..125193689,-#_c059a5f243e8017531074f815ec54d6ep@chr8:125193673..125193689, -
9.91e-41FFCP PHASE2:Hg19::chr3:49139102..49139119,-#_c059a5f243e8017531074f815ec54d6ep@chr3:49139102..49139119, -
9.91e-41FFCP PHASE2:Hg19::chr15:34522001..34522013,+#_c059a5f243e8017531074f815ec54d6ep@chr15:34522001..34522013, +
9.91e-41FFCP PHASE1:Hg19::chr15:34522001..34522013,+#_c059a5f243e8017531074f815ec54d6ep@chr15:34522001..34522013, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005297&oldid=3274437"