UBERON:0005427: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea." [ZFIN:ZDB-PUB-061010-3] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0002342 | |develops_from=UBERON:0002342 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005427 | |||
|is_a=UBERON:0000479 ;;UBERON:0001048 ;;UBERON:0010312 ;;UBERON:0010313 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=corneal primordium | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0000019 | |part_of=UBERON:0000019 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=TAO:0002188;;ZFA:0001688 | |||
}} | }} | ||
Revision as of 11:36, 12 September 2014
| Name: | corneal primordium | ||
|---|---|---|---|
| Definition: | "Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea." [ZFIN:ZDB-PUB-061010-3] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0001048(primordium),UBERON:0010312(immature eye),UBERON:0010313(neural crest-derived structure) |
|---|---|
| develops_from: | UBERON:0002342(neural crest) |
| part_of: | UBERON:0000019(camera-type eye) |
Children
| develops from: | UBERON:0000964 (cornea) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005427 (corneal primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.67e-66 | FFCP PHASE1:Hg19::chr17:39023189..39023197,-#_ee34824d97040a7ae6e4116d8a05f109 | p2@KRT12 |
| 4.67e-66 | FFCP PHASE2:Hg19::chr17:39023189..39023197,-#_ee34824d97040a7ae6e4116d8a05f109 | p2@KRT12 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:150910973..150910976,-#_22ed31d2c65fd590411d046840d80921 | p@chr7:150910973..150910976, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:52362029..52362031,+#_22ed31d2c65fd590411d046840d80921 | p@chr3:52362029..52362031, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:150910973..150910976,-#_22ed31d2c65fd590411d046840d80921 | p@chr7:150910973..150910976, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:52362029..52362031,+#_22ed31d2c65fd590411d046840d80921 | p@chr3:52362029..52362031, + |
| 3.31e-40 | FFCP PHASE2:Hg19::chr12:53189894..53189905,-#_411eb4d005904170a0593516af850e0b | p1@KRT3 |
| 3.31e-40 | FFCP PHASE1:Hg19::chr12:53189894..53189905,-#_411eb4d005904170a0593516af850e0b | p1@KRT3 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr22:30144620..30144638,-#_58217bb4b2b6799ac5dd0dc2befaf403 | p7@ZMAT5 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr22:30144620..30144638,-#_58217bb4b2b6799ac5dd0dc2befaf403 | p7@ZMAT5 |
| 1.17e-33 | FFCP PHASE1:Hg19::chr8:124206334..124206344,+#_6f31c9720b1dffaf87aa5e6e05e7a18c | p@chr8:124206334..124206344, + |
| 1.17e-33 | FFCP PHASE2:Hg19::chr8:124206334..124206344,+#_6f31c9720b1dffaf87aa5e6e05e7a18c | p@chr8:124206334..124206344, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:19403546..19403571,-#_cb3fef201ffae925d761bada2c28cd5f | p@chr1:19403546..19403571, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr7:1600419..1600429,-#_cb3fef201ffae925d761bada2c28cd5f | p11@TMEM184A |
| 3.16e-29 | FFCP PHASE2:Hg19::chr7:1600419..1600429,-#_cb3fef201ffae925d761bada2c28cd5f | p11@TMEM184A |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:19403546..19403571,-#_cb3fef201ffae925d761bada2c28cd5f | p@chr1:19403546..19403571, - |
| 5.61e-29 | FFCP PHASE2:Hg19::chr12:48164790..48164808,-#_d04aacc5810f44db29013de0abe7b408 | p16@RAPGEF3 |
| 5.61e-29 | FFCP PHASE1:Hg19::chr12:48164790..48164808,-#_d04aacc5810f44db29013de0abe7b408 | p16@RAPGEF3 |
| 5.61e-29 | FFCP PHASE1:Hg19::chr20:43743762..43743770,-#_d04aacc5810f44db29013de0abe7b408 | p3@WFDC5 |
| 5.61e-29 | FFCP PHASE2:Hg19::chr20:43743762..43743770,-#_d04aacc5810f44db29013de0abe7b408 | p3@WFDC5 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr16:3014251..3014254,+#_90c4266bcb8406800c2648a0f0b014aa | p3@KREMEN2 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr16:3014251..3014254,+#_90c4266bcb8406800c2648a0f0b014aa | p3@KREMEN2 |
| 6.73e-26 | FFCP PHASE1:Hg19::chr6:35048829..35048844,+#_05f007042ae190ce3980fe5d2c3cab15 | p@chr6:35048829..35048844, + |
| 6.73e-26 | FFCP PHASE2:Hg19::chr6:35048829..35048844,+#_05f007042ae190ce3980fe5d2c3cab15 | p@chr6:35048829..35048844, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr15:49255230..49255248,-#_7b7f64e649cbb09986661a2150d8181b | p16@SHC4 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:92617531..92617541,-#_7b7f64e649cbb09986661a2150d8181b | p8@HTR7 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:22932230..22932233,-#_7b7f64e649cbb09986661a2150d8181b | p5@ENST00000520840, p5@ENST00000523806 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr16:56368957..56368963,+#_7b7f64e649cbb09986661a2150d8181b | p@chr16:56368957..56368963, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:92617531..92617541,-#_7b7f64e649cbb09986661a2150d8181b | p8@HTR7 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr15:49255230..49255248,-#_7b7f64e649cbb09986661a2150d8181b | p16@SHC4 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:113369869..113369877,+#_7b7f64e649cbb09986661a2150d8181b | p@chr6:113369869..113369877, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:113369869..113369877,+#_7b7f64e649cbb09986661a2150d8181b | p@chr6:113369869..113369877, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr16:56368957..56368963,+#_7b7f64e649cbb09986661a2150d8181b | p@chr16:56368957..56368963, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:22932230..22932233,-#_7b7f64e649cbb09986661a2150d8181b | p5@ENST00000520840, p5@ENST00000523806 |
| 8.66e-26 | FFCP PHASE1:Hg19::chr11:67463189..67463193,-#_33e979ffe87b42034aa3cc1923c4d5ba | p@chr11:67463189..67463193, - |
| 8.66e-26 | FFCP PHASE2:Hg19::chr11:67463189..67463193,-#_33e979ffe87b42034aa3cc1923c4d5ba | p@chr11:67463189..67463193, - |
| 1.0e-22 | FFCP PHASE2:Hg19::chr12:46897588..46897603,+#_bb502f79e233f9d3e49b78df5288009b | p@chr12:46897588..46897603, + |
| 1.0e-22 | FFCP PHASE1:Hg19::chr12:46897588..46897603,+#_bb502f79e233f9d3e49b78df5288009b | p@chr12:46897588..46897603, + |
| 1.12e-22 | FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_41e65ff898f2da71f5b8121526c47bd0 | p@chr13:20934450..20934456, + |
| 1.12e-22 | FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_41e65ff898f2da71f5b8121526c47bd0 | p@chr13:20934450..20934456, + |
| 1.25e-22 | FFCP PHASE1:Hg19::chr19:51538096..51538109,-#_7a82bd056f823de0129e29b42ee9f41d | p5@KLK12 |
| 1.25e-22 | FFCP PHASE2:Hg19::chr19:51538096..51538109,-#_7a82bd056f823de0129e29b42ee9f41d | p5@KLK12 |
| 5.17e-21 | FFCP PHASE1:Hg19::chr10:5529595..5529606,-#_4deb1bbb8e6abfba1059eb0fb1cd32e6 | p@chr10:5529595..5529606, - |
| 5.17e-21 | FFCP PHASE2:Hg19::chr10:5529595..5529606,-#_4deb1bbb8e6abfba1059eb0fb1cd32e6 | p@chr10:5529595..5529606, - |
| 7.74e-21 | FFCP PHASE1:Hg19::chr19:1249729..1249741,+#_69f8ddbac083e4b946254e244db21ad8 | p19@MIDN |
| 7.74e-21 | FFCP PHASE2:Hg19::chr19:1249729..1249741,+#_69f8ddbac083e4b946254e244db21ad8 | p19@MIDN |
| 1.15e-20 | FFCP PHASE1:Hg19::chr2:131669803..131669810,+#_dc7d9e66b08492e455383cc672f9157c | p@chr2:131669803..131669810, + |
| 1.15e-20 | FFCP PHASE2:Hg19::chr2:131669803..131669810,+#_dc7d9e66b08492e455383cc672f9157c | p@chr2:131669803..131669810, + |
| 1.28e-20 | FFCP PHASE1:Hg19::chr9:127212697..127212708,+#_6740eb9dd808b13fa59831b99e857f2b | p@chr9:127212697..127212708, + |
| 1.28e-20 | FFCP PHASE2:Hg19::chr9:127212697..127212708,+#_6740eb9dd808b13fa59831b99e857f2b | p@chr9:127212697..127212708, + |
| 1.56e-20 | FFCP PHASE1:Hg19::chr19:1905001..1905006,+#_83e48e8d0ae62862157c642135088431 | p11@SCAMP4 |
| 1.56e-20 | FFCP PHASE2:Hg19::chr19:1905001..1905006,+#_83e48e8d0ae62862157c642135088431 | p11@SCAMP4 |
| 1.9e-20 | FFCP PHASE2:Hg19::chr19:50709335..50709346,+#_13d1756e698b7ce896e2ab569cc022d4 | p@chr19:50709335..50709346, + |
| 1.9e-20 | FFCP PHASE2:Hg19::chr15:72490099..72490109,-#_13d1756e698b7ce896e2ab569cc022d4 | p3@GRAMD2 |
| 1.9e-20 | FFCP PHASE1:Hg19::chr15:72490099..72490109,-#_13d1756e698b7ce896e2ab569cc022d4 | p3@GRAMD2 |
| 1.9e-20 | FFCP PHASE1:Hg19::chr19:50709335..50709346,+#_13d1756e698b7ce896e2ab569cc022d4 | p@chr19:50709335..50709346, + |
| 2.76e-19 | FFCP PHASE1:Hg19::chr20:25176603..25176614,+#_e253a16b1ea445677dff38f736c1da2c | p@chr20:25176603..25176614, + |
| 2.76e-19 | FFCP PHASE2:Hg19::chr20:25176603..25176614,+#_e253a16b1ea445677dff38f736c1da2c | p@chr20:25176603..25176614, + |
| 6.77e-19 | FFCP PHASE1:Hg19::chr19:44306567..44306574,-#_73dec7b3626376f5eb800426c20f99ca | p7@LYPD5 |
| 6.77e-19 | FFCP PHASE2:Hg19::chr19:44306567..44306574,-#_73dec7b3626376f5eb800426c20f99ca | p7@LYPD5 |
| 8.88e-19 | FFCP PHASE2:Hg19::chr2:28853455..28853476,+#_7fc65f4d33e86c7a20a8c085e8c32fc5 | p@chr2:28853455..28853476, + |
| 8.88e-19 | FFCP PHASE1:Hg19::chr2:28853455..28853476,+#_7fc65f4d33e86c7a20a8c085e8c32fc5 | p@chr2:28853455..28853476, + |
| 9.72e-19 | FFCP PHASE1:Hg19::chr20:42816206..42816211,-#_2e6844ccfc71d246f5a347efe0f8f9e9 | p8@JPH2 |
| 9.72e-19 | FFCP PHASE1:Hg19::chr19:51538121..51538134,-#_2e6844ccfc71d246f5a347efe0f8f9e9 | p4@KLK12 |
| 9.72e-19 | FFCP PHASE2:Hg19::chr20:42816206..42816211,-#_2e6844ccfc71d246f5a347efe0f8f9e9 | p8@JPH2 |
| 9.72e-19 | FFCP PHASE2:Hg19::chr19:51538121..51538134,-#_2e6844ccfc71d246f5a347efe0f8f9e9 | p4@KLK12 |
| 8.69e-18 | FFCP PHASE2:Hg19::chr6:151770193..151770196,-#_53ee90a450f57a81c7c38bf832b6ee92 | p@chr6:151770193..151770196, - |
| 8.69e-18 | FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_53ee90a450f57a81c7c38bf832b6ee92 | p@chr3:124535316..124535340, + |
| 8.69e-18 | FFCP PHASE1:Hg19::chr5:59064162..59064173,-#_53ee90a450f57a81c7c38bf832b6ee92 | p72@PDE4D |
| 8.69e-18 | FFCP PHASE1:Hg19::chr1:44820685..44820695,-#_53ee90a450f57a81c7c38bf832b6ee92 | p10@ERI3 |
| 8.69e-18 | FFCP PHASE2:Hg19::chr5:59064162..59064173,-#_53ee90a450f57a81c7c38bf832b6ee92 | p72@PDE4D |
| 8.69e-18 | FFCP PHASE1:Hg19::chr21:47410794..47410799,+#_53ee90a450f57a81c7c38bf832b6ee92 | p@chr21:47410794..47410799, + |
| 8.69e-18 | FFCP PHASE2:Hg19::chr1:44820685..44820695,-#_53ee90a450f57a81c7c38bf832b6ee92 | p10@ERI3 |
| 8.69e-18 | FFCP PHASE1:Hg19::chr6:151770193..151770196,-#_53ee90a450f57a81c7c38bf832b6ee92 | p@chr6:151770193..151770196, - |
| 8.69e-18 | FFCP PHASE2:Hg19::chr21:47410794..47410799,+#_53ee90a450f57a81c7c38bf832b6ee92 | p@chr21:47410794..47410799, + |
| 8.69e-18 | FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_53ee90a450f57a81c7c38bf832b6ee92 | p@chr3:124535316..124535340, + |
| 1.03e-17 | FFCP PHASE2:Hg19::chr1:9970194..9970195,-#_03c7e4f3fe12fd80c8d31250333075e7 | p14@CTNNBIP1 |
| 1.03e-17 | FFCP PHASE1:Hg19::chr5:79375654..79375674,+#_03c7e4f3fe12fd80c8d31250333075e7 | p@chr5:79375654..79375674, + |
| 1.03e-17 | FFCP PHASE1:Hg19::chr2:25383828..25383855,-#_03c7e4f3fe12fd80c8d31250333075e7 | p4@POMC |
| 1.03e-17 | FFCP PHASE1:Hg19::chr15:101459410..101459421,-#_03c7e4f3fe12fd80c8d31250333075e7 | p2@ENST00000560068 |
| 1.03e-17 | FFCP PHASE2:Hg19::chr5:79375654..79375674,+#_03c7e4f3fe12fd80c8d31250333075e7 | p@chr5:79375654..79375674, + |
| 1.03e-17 | FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_03c7e4f3fe12fd80c8d31250333075e7 | p@chr10:74020629..74020634, - |
| 1.03e-17 | FFCP PHASE2:Hg19::chr2:25383828..25383855,-#_03c7e4f3fe12fd80c8d31250333075e7 | p4@POMC |
| 1.03e-17 | FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_03c7e4f3fe12fd80c8d31250333075e7 | p@chr10:74020629..74020634, - |
| 1.03e-17 | FFCP PHASE1:Hg19::chr10:43133595..43133606,-#_03c7e4f3fe12fd80c8d31250333075e7 | p@chr10:43133595..43133606, - |
| 1.03e-17 | FFCP PHASE1:Hg19::chr11:65265332..65265342,+#_03c7e4f3fe12fd80c8d31250333075e7 | p19@MALAT1 |
| 1.03e-17 | FFCP PHASE2:Hg19::chr10:43133595..43133606,-#_03c7e4f3fe12fd80c8d31250333075e7 | p@chr10:43133595..43133606, - |
| 1.03e-17 | FFCP PHASE2:Hg19::chr11:65265332..65265342,+#_03c7e4f3fe12fd80c8d31250333075e7 | p19@MALAT1 |
| 1.03e-17 | FFCP PHASE1:Hg19::chr1:9970194..9970195,-#_03c7e4f3fe12fd80c8d31250333075e7 | p14@CTNNBIP1 |
| 1.03e-17 | FFCP PHASE2:Hg19::chr15:101459410..101459421,-#_03c7e4f3fe12fd80c8d31250333075e7 | p2@ENST00000560068 |
| 2.59e-17 | FFCP PHASE2:Hg19::chr11:119039069..119039081,+#_518f97610ac239a23c3b31a7f443265c | p9@NLRX1 |
| 2.59e-17 | FFCP PHASE1:Hg19::chr11:119039069..119039081,+#_518f97610ac239a23c3b31a7f443265c | p9@NLRX1 |
| 2.09e-16 | FFCP PHASE2:Hg19::chr12:48164812..48164829,-#_0bb090b540e5ce2eb47a5b679fa2f7ea | p14@RAPGEF3 |
| 2.09e-16 | FFCP PHASE1:Hg19::chr12:48164812..48164829,-#_0bb090b540e5ce2eb47a5b679fa2f7ea | p14@RAPGEF3 |
| 2.64e-16 | FFCP PHASE1:Hg19::chr2:131669791..131669801,+#_ae7ad33367442dfe905db53700349d34 | p@chr2:131669791..131669801, + |
| 2.64e-16 | FFCP PHASE2:Hg19::chr2:131669791..131669801,+#_ae7ad33367442dfe905db53700349d34 | p@chr2:131669791..131669801, + |
| 3.32e-16 | FFCP PHASE2:Hg19::chr17:39742822..39742850,+#_4542b62f360c74fa04dc23e73eea0b10 | p@chr17:39742822..39742850, + |
| 3.32e-16 | FFCP PHASE1:Hg19::chr17:39742822..39742850,+#_4542b62f360c74fa04dc23e73eea0b10 | p@chr17:39742822..39742850, + |
| 3.59e-16 | FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_cd29b053f71c9c800d4c3c757f5590ce | p@chr1:3591362..3591369, - |
| 3.59e-16 | FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_cd29b053f71c9c800d4c3c757f5590ce | p@chr1:3591362..3591369, - |
