UBERON:0006215: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0006215 | |||
|is_a=UBERON:0001048 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON:0002028 | |name=rhombic lip | ||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0002028;;UBERON:0010092 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string | ||
| | |subset=vertebrate_core | ||
| | |synonym="cerebellum primordium" RELATED [EMAPA:17074];;"dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074] | ||
|union_of= | |||
|xref=EHDAA2:0000229;;EMAPA:17074;;TAO:0001440;;XAO:0004135;;ZFA:0001440 | |||
}} | }} | ||
Revision as of 11:38, 12 September 2014
| Name: | rhombic lip | ||
|---|---|---|---|
| Definition: | "The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"cerebellum primordium" RELATED [EMAPA:17074] "dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001048(primordium) |
|---|---|
| part_of: | UBERON:0002028(hindbrain),UBERON:0010092(future metencephalon) |
Children
| develops from: | UBERON:0002037 (cerebellum) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006215 (rhombic lip), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.83e-98 | FFCP PHASE2:Hg19::chr17:72673744..72673754,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr17:72673744..72673754, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:161112675..161112678,+#_313c5c6a1300570bfbc9c72afbf5a297 | p10@GABRA6 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr2:39894333..39894353,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr2:39894333..39894353, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:59775744..59775751,+#_313c5c6a1300570bfbc9c72afbf5a297 | p24@FGGY |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:89680444..89680453,-#_313c5c6a1300570bfbc9c72afbf5a297 | p31@FAM13A |
| 1.83e-98 | FFCP PHASE1:Hg19::chr20:45062007..45062020,+#_313c5c6a1300570bfbc9c72afbf5a297 | p7@AK054905 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr18:8783620..8783627,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr18:8783620..8783627, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:106499338..106499354,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr1:106499338..106499354, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr18:39687774..39687782,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr18:39687774..39687782, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr16:3656599..3656608,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr16:3656599..3656608, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr14:77582887..77582896,+#_313c5c6a1300570bfbc9c72afbf5a297 | p12@TMEM63C |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:65999337..65999347,+#_313c5c6a1300570bfbc9c72afbf5a297 | p26@PACS1 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr3:147141170..147141181,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr3:147141170..147141181, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr14:24898471..24898476,-#_313c5c6a1300570bfbc9c72afbf5a297 | p13@CBLN3 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr17:72673771..72673779,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr17:72673771..72673779, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:2257102..2257110,-#_313c5c6a1300570bfbc9c72afbf5a297 | p6@MXD4 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr3:147114396..147114403,-#_313c5c6a1300570bfbc9c72afbf5a297 | p23@ZIC4 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr22:51137783..51137794,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr22:51137783..51137794, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr18:39687774..39687782,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr18:39687774..39687782, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:123396575..123396583,+#_313c5c6a1300570bfbc9c72afbf5a297 | p9@GRAMD1B |
| 1.83e-98 | FFCP PHASE2:Hg19::chr14:79746650..79746659,+#_313c5c6a1300570bfbc9c72afbf5a297 | p23@NRXN3 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr12:113682304..113682315,+#_313c5c6a1300570bfbc9c72afbf5a297 | p17@TPCN1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:228602576..228602587,-#_313c5c6a1300570bfbc9c72afbf5a297 | p1@CU689740 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:49815147..49815153,+#_313c5c6a1300570bfbc9c72afbf5a297 | p5@VWC2 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr10:71562284..71562291,+#_313c5c6a1300570bfbc9c72afbf5a297 | p14@COL13A1 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:64146900..64146905,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr11:64146900..64146905, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:71928371..71928382,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr4:71928371..71928382, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr2:149835072..149835078,+#_313c5c6a1300570bfbc9c72afbf5a297 | p39@KIF5C |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:161112862..161112869,+#_313c5c6a1300570bfbc9c72afbf5a297 | p11@GABRA6 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:106499338..106499354,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr1:106499338..106499354, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr20:45062290..45062300,+#_313c5c6a1300570bfbc9c72afbf5a297 | p3@AK054905 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:242613002..242613023,-#_313c5c6a1300570bfbc9c72afbf5a297 | p11@PLD5 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr6:34046479..34046486,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr6:34046479..34046486, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:3287626..3287633,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr4:3287626..3287633, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr15:81489344..81489353,+#_313c5c6a1300570bfbc9c72afbf5a297 | p31@IL16 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr13:100633107..100633110,+#_313c5c6a1300570bfbc9c72afbf5a297 | p7@AK298232 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:24526024..24526028,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr1:24526024..24526028, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr14:77582934..77582947,+#_313c5c6a1300570bfbc9c72afbf5a297 | p9@TMEM63C |
| 1.83e-98 | FFCP PHASE2:Hg19::chr3:22108366..22108373,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr3:22108366..22108373, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr8:140666585..140666599,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr8:140666585..140666599, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr2:202634440..202634472,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr2:202634440..202634472, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr6:72922572..72922582,+#_313c5c6a1300570bfbc9c72afbf5a297 | p30@RIMS1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr5:161113132..161113181,+#_313c5c6a1300570bfbc9c72afbf5a297 | p9@GABRA6 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr6:152884494..152884503,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr6:152884494..152884503, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr4:93225020..93225031,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr4:93225020..93225031, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr21:47314143..47314154,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr21:47314143..47314154, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr20:44935658..44935665,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr20:44935658..44935665, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr17:72667483..72667484,+#_313c5c6a1300570bfbc9c72afbf5a297 | p18@RAB37 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr14:60048980..60048989,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr14:60048980..60048989, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr18:66918040..66918047,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr18:66918040..66918047, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:155302128..155302137,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr7:155302128..155302137, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr22:32022290..32022297,-#_313c5c6a1300570bfbc9c72afbf5a297 | p30@PISD |
| 1.83e-98 | FFCP PHASE2:Hg19::chr21:32624517..32624531,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr21:32624517..32624531, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr16:612039..612048,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr16:612039..612048, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr14:24898354..24898366,-#_313c5c6a1300570bfbc9c72afbf5a297 | p8@CBLN3 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:133902562..133902580,+#_313c5c6a1300570bfbc9c72afbf5a297 | p1@ENST00000529070 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr22:31968960..31968972,+#_313c5c6a1300570bfbc9c72afbf5a297 | p13@SFI1 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr18:59415396..59415427,+#_313c5c6a1300570bfbc9c72afbf5a297 | p1@uc002lig.1 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr6:146350267..146350276,+#_313c5c6a1300570bfbc9c72afbf5a297 | p10@GRM1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr13:113624941..113624962,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr13:113624941..113624962, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr16:609808..609817,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr16:609808..609817, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:29162047..29162055,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr7:29162047..29162055, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr17:72673771..72673779,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr17:72673771..72673779, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:161112693..161112696,+#_313c5c6a1300570bfbc9c72afbf5a297 | p12@GABRA6 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:114254131..114254143,+#_313c5c6a1300570bfbc9c72afbf5a297 | p35@ANK2 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr2:39892073..39892078,+#_313c5c6a1300570bfbc9c72afbf5a297 | p25@TMEM178 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:59775752..59775763,+#_313c5c6a1300570bfbc9c72afbf5a297 | p19@FGGY |
| 1.83e-98 | FFCP PHASE1:Hg19::chr20:45062029..45062044,+#_313c5c6a1300570bfbc9c72afbf5a297 | p6@AK054905 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr6:34004237..34004248,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr6:34004237..34004248, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr17:39553443..39553452,-#_313c5c6a1300570bfbc9c72afbf5a297 | p2@KRT31 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr8:17579288..17579296,-#_313c5c6a1300570bfbc9c72afbf5a297 | p69@MTUS1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr16:3656616..3656628,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr16:3656616..3656628, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr13:100633194..100633202,+#_313c5c6a1300570bfbc9c72afbf5a297 | p6@AK298232 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:20012479..20012482,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr5:20012479..20012482, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr4:166678786..166678822,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr4:166678786..166678822, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr3:22062741..22062742,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr3:22062741..22062742, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr18:50985377..50985386,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr18:50985377..50985386, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr20:45061641..45061646,-#_313c5c6a1300570bfbc9c72afbf5a297 | p13@ELMO2 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr5:161112767..161112774,+#_313c5c6a1300570bfbc9c72afbf5a297 | p5@GABRA6 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr19:6501203..6501206,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr19:6501203..6501206, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr16:87376991..87377002,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr16:87376991..87377002, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr6:34041419..34041429,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr6:34041419..34041429, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr13:100623731..100623747,-#_313c5c6a1300570bfbc9c72afbf5a297 | p8@ZIC5 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:87777127..87777141,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr5:87777127..87777141, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:29237354..29237369,+#_313c5c6a1300570bfbc9c72afbf5a297 | p32@CHN2 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr14:77582822..77582838,+#_313c5c6a1300570bfbc9c72afbf5a297 | p6@TMEM63C |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:46639505..46639517,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr1:46639505..46639517, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr12:72667119..72667130,+#_313c5c6a1300570bfbc9c72afbf5a297 | p16@TRHDE |
| 1.83e-98 | FFCP PHASE2:Hg19::chr16:87376991..87377002,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr16:87376991..87377002, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:244355163..244355179,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr1:244355163..244355179, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr20:30616884..30616898,-#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr20:30616884..30616898, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chrX:71131124..71131135,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chrX:71131124..71131135, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr9:109460295..109460307,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr9:109460295..109460307, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:159766567..159766580,-#_313c5c6a1300570bfbc9c72afbf5a297 | p8@CCNJL |
| 1.83e-98 | FFCP PHASE2:Hg19::chr11:108438755..108438763,-#_313c5c6a1300570bfbc9c72afbf5a297 | p20@EXPH5 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:71928391..71928403,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr4:71928391..71928403, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr2:155565839..155565848,+#_313c5c6a1300570bfbc9c72afbf5a297 | p12@KCNJ3 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr6:72922523..72922536,+#_313c5c6a1300570bfbc9c72afbf5a297 | p26@RIMS1 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:161112907..161112928,+#_313c5c6a1300570bfbc9c72afbf5a297 | p8@GABRA6 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:93224771..93224774,+#_313c5c6a1300570bfbc9c72afbf5a297 | p@chr4:93224771..93224774, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
