Personal tools

UBERON:0009034: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0009034
|alt_id=
|name=stomach region
|namespace=
|def=
|xref=MA:0002561;;SCTID:245415005
|is_a=UBERON:0000064;;UBERON:0004119
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009034
|is_a=UBERON:0000064
|is_obsolete=
|located_in=
|located_in=
|name=stomach region
|namespace=
|obo_creation_date=
|part_of=UBERON:0000945
|part_of=UBERON:0000945
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=MA:0002561;;SCTID:245415005
}}
}}

Revision as of 11:46, 12 September 2014

Name:stomach region
Xrefs:
links:

MA:0002561

SCTID:245415005

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part)
part_of:UBERON:0000945(stomach)



Children

is a:UBERON:0003281 (mesentery of stomach)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009034 (stomach region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr9:127269434..127269438,-#_069ce0ef634b7ffd8806660c6e03de89p8@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr6:119812455..119812476,-#_069ce0ef634b7ffd8806660c6e03de89p1@uc003pyn.1
8.98e-131FFCP PHASE2:Hg19::chr14:75904485..75904519,+#_069ce0ef634b7ffd8806660c6e03de89p12@JDP2
8.98e-131FFCP PHASE2:Hg19::chr9:79894790..79894797,+#_069ce0ef634b7ffd8806660c6e03de89p10@VPS13A
8.98e-131FFCP PHASE1:Hg19::chr11:56859693..56859701,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:56859693..56859701, -
8.98e-131FFCP PHASE1:Hg19::chr7:22259740..22259751,-#_069ce0ef634b7ffd8806660c6e03de89p19@RAPGEF5
8.98e-131FFCP PHASE2:Hg19::chr4:76901930..76901942,+#_069ce0ef634b7ffd8806660c6e03de89p1@ENST00000501239
8.98e-131FFCP PHASE2:Hg19::chr11:56859693..56859701,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:56859693..56859701, -
8.98e-131FFCP PHASE1:Hg19::chr9:127269488..127269495,-#_069ce0ef634b7ffd8806660c6e03de89p5@NR5A1
8.98e-131FFCP PHASE2:Hg19::chr1:159172187..159172197,-#_069ce0ef634b7ffd8806660c6e03de89p1@uc001ftm.1
8.98e-131FFCP PHASE2:Hg19::chr9:127260615..127260651,-#_069ce0ef634b7ffd8806660c6e03de89p@chr9:127260615..127260651, -
8.98e-131FFCP PHASE2:Hg19::chr8:22436248..22436259,+#_069ce0ef634b7ffd8806660c6e03de89p11@PDLIM2
8.98e-131FFCP PHASE1:Hg19::chr9:124516729..124516752,+#_069ce0ef634b7ffd8806660c6e03de89p@chr9:124516729..124516752, +
8.98e-131FFCP PHASE1:Hg19::chr1:28520450..28520453,-#_069ce0ef634b7ffd8806660c6e03de89p21@PTAFR
8.98e-131FFCP PHASE1:Hg19::chr1:157811772..157811796,-#_069ce0ef634b7ffd8806660c6e03de89p7@CD5L
8.98e-131FFCP PHASE1:Hg19::chr11:56859584..56859589,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:56859584..56859589, -
8.98e-131FFCP PHASE2:Hg19::chr9:133973310..133973321,+#_069ce0ef634b7ffd8806660c6e03de89p18@AIF1L
8.98e-131FFCP PHASE2:Hg19::chr21:28820941..28820952,-#_069ce0ef634b7ffd8806660c6e03de89p2@ENST00000420186, p2@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr8:22424709..22424716,-#_069ce0ef634b7ffd8806660c6e03de89p2@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chr17:78171885..78171900,+#_069ce0ef634b7ffd8806660c6e03de89p@chr17:78171885..78171900, +
8.98e-131FFCP PHASE1:Hg19::chr16:84218794..84218800,+#_069ce0ef634b7ffd8806660c6e03de89p@chr16:84218794..84218800, +
8.98e-131FFCP PHASE2:Hg19::chr11:56859584..56859589,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:56859584..56859589, -
8.98e-131FFCP PHASE2:Hg19::chr9:127269462..127269484,-#_069ce0ef634b7ffd8806660c6e03de89p2@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr21:28820892..28820899,-#_069ce0ef634b7ffd8806660c6e03de89p4@ENST00000420186, p4@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr11:925449..925458,+#_069ce0ef634b7ffd8806660c6e03de89p17@AP2A2
8.98e-131FFCP PHASE2:Hg19::chr6:152639579..152639586,-#_069ce0ef634b7ffd8806660c6e03de89p60@SYNE1
8.98e-131FFCP PHASE2:Hg19::chr8:47834174..47834213,+#_069ce0ef634b7ffd8806660c6e03de89p1@ENST00000524012
8.98e-131FFCP PHASE1:Hg19::chr19:32401253..32401271,-#_069ce0ef634b7ffd8806660c6e03de89p@chr19:32401253..32401271, -
8.98e-131FFCP PHASE1:Hg19::chr8:22424743..22424759,-#_069ce0ef634b7ffd8806660c6e03de89p1@ENST00000517384
8.98e-131FFCP PHASE1:Hg19::chrX:69645652..69645664,+#_069ce0ef634b7ffd8806660c6e03de89p7@GDPD2
8.98e-131FFCP PHASE2:Hg19::chr7:22259740..22259751,-#_069ce0ef634b7ffd8806660c6e03de89p19@RAPGEF5
8.98e-131FFCP PHASE1:Hg19::chr11:56859603..56859606,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:56859603..56859606, -
8.98e-131FFCP PHASE2:Hg19::chr21:28820954..28820963,-#_069ce0ef634b7ffd8806660c6e03de89p3@ENST00000420186, p3@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr11:56859603..56859606,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:56859603..56859606, -
8.98e-131FFCP PHASE2:Hg19::chr9:127269488..127269495,-#_069ce0ef634b7ffd8806660c6e03de89p5@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr21:28820911..28820933,-#_069ce0ef634b7ffd8806660c6e03de89p1@ENST00000420186, p1@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr17:78171885..78171900,+#_069ce0ef634b7ffd8806660c6e03de89p@chr17:78171885..78171900, +
8.98e-131FFCP PHASE2:Hg19::chr9:124516729..124516752,+#_069ce0ef634b7ffd8806660c6e03de89p@chr9:124516729..124516752, +
8.98e-131FFCP PHASE2:Hg19::chr6:119812455..119812476,-#_069ce0ef634b7ffd8806660c6e03de89p1@uc003pyn.1
8.98e-131FFCP PHASE1:Hg19::chr9:79894790..79894797,+#_069ce0ef634b7ffd8806660c6e03de89p10@VPS13A
8.98e-131FFCP PHASE1:Hg19::chr10:98014908..98014919,-#_069ce0ef634b7ffd8806660c6e03de89p@chr10:98014908..98014919, -
8.98e-131FFCP PHASE1:Hg19::chr4:76901930..76901942,+#_069ce0ef634b7ffd8806660c6e03de89p1@ENST00000501239
8.98e-131FFCP PHASE1:Hg19::chr8:22436248..22436259,+#_069ce0ef634b7ffd8806660c6e03de89p11@PDLIM2
8.98e-131FFCP PHASE1:Hg19::chr1:159172187..159172197,-#_069ce0ef634b7ffd8806660c6e03de89p1@uc001ftm.1
8.98e-131FFCP PHASE1:Hg19::chr11:56859608..56859619,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:56859608..56859619, -
8.98e-131FFCP PHASE2:Hg19::chr10:98014908..98014919,-#_069ce0ef634b7ffd8806660c6e03de89p@chr10:98014908..98014919, -
8.98e-131FFCP PHASE2:Hg19::chr1:28520450..28520453,-#_069ce0ef634b7ffd8806660c6e03de89p21@PTAFR
8.98e-131FFCP PHASE2:Hg19::chr11:56859608..56859619,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:56859608..56859619, -
8.98e-131FFCP PHASE1:Hg19::chr9:127269434..127269438,-#_069ce0ef634b7ffd8806660c6e03de89p8@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr21:28820941..28820952,-#_069ce0ef634b7ffd8806660c6e03de89p2@ENST00000420186, p2@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr15:95561320..95561328,-#_069ce0ef634b7ffd8806660c6e03de89p@chr15:95561320..95561328, -
8.98e-131FFCP PHASE2:Hg19::chr8:22424709..22424716,-#_069ce0ef634b7ffd8806660c6e03de89p2@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chr1:157811772..157811796,-#_069ce0ef634b7ffd8806660c6e03de89p7@CD5L
8.98e-131FFCP PHASE2:Hg19::chr21:28820892..28820899,-#_069ce0ef634b7ffd8806660c6e03de89p4@ENST00000420186, p4@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr9:127260615..127260651,-#_069ce0ef634b7ffd8806660c6e03de89p@chr9:127260615..127260651, -
8.98e-131FFCP PHASE2:Hg19::chr16:84218794..84218800,+#_069ce0ef634b7ffd8806660c6e03de89p@chr16:84218794..84218800, +
8.98e-131FFCP PHASE1:Hg19::chr10:98014943..98014960,-#_069ce0ef634b7ffd8806660c6e03de89p@chr10:98014943..98014960, -
8.98e-131FFCP PHASE1:Hg19::chr6:152639579..152639586,-#_069ce0ef634b7ffd8806660c6e03de89p60@SYNE1
8.98e-131FFCP PHASE1:Hg19::chr9:133973310..133973321,+#_069ce0ef634b7ffd8806660c6e03de89p18@AIF1L
8.98e-131FFCP PHASE2:Hg19::chr15:95561320..95561328,-#_069ce0ef634b7ffd8806660c6e03de89p@chr15:95561320..95561328, -
8.98e-131FFCP PHASE1:Hg19::chr11:56859638..56859643,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:56859638..56859643, -
8.98e-131FFCP PHASE2:Hg19::chr10:98014943..98014960,-#_069ce0ef634b7ffd8806660c6e03de89p@chr10:98014943..98014960, -
8.98e-131FFCP PHASE1:Hg19::chr14:75904485..75904519,+#_069ce0ef634b7ffd8806660c6e03de89p12@JDP2
8.98e-131FFCP PHASE1:Hg19::chr8:47834174..47834213,+#_069ce0ef634b7ffd8806660c6e03de89p1@ENST00000524012
8.98e-131FFCP PHASE2:Hg19::chr11:56859638..56859643,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:56859638..56859643, -
8.98e-131FFCP PHASE2:Hg19::chr19:32401253..32401271,-#_069ce0ef634b7ffd8806660c6e03de89p@chr19:32401253..32401271, -
8.98e-131FFCP PHASE1:Hg19::chr9:127269462..127269484,-#_069ce0ef634b7ffd8806660c6e03de89p2@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr21:28820954..28820963,-#_069ce0ef634b7ffd8806660c6e03de89p3@ENST00000420186, p3@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr11:1891326..1891337,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:1891326..1891337, -
8.98e-131FFCP PHASE2:Hg19::chr8:22424743..22424759,-#_069ce0ef634b7ffd8806660c6e03de89p1@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chrX:69645652..69645664,+#_069ce0ef634b7ffd8806660c6e03de89p7@GDPD2
8.98e-131FFCP PHASE2:Hg19::chr11:1891326..1891337,-#_069ce0ef634b7ffd8806660c6e03de89p@chr11:1891326..1891337, -
8.98e-131FFCP PHASE2:Hg19::chr11:925449..925458,+#_069ce0ef634b7ffd8806660c6e03de89p17@AP2A2
8.98e-131FFCP PHASE2:Hg19::chr21:28820911..28820933,-#_069ce0ef634b7ffd8806660c6e03de89p1@ENST00000420186, p1@uc002ymh.2
6.24e-88FFCP PHASE2:Hg19::chr1:21011608..21011618,-#_45ccae8a5e7ffdd8308d5127d411f176p15@KIF17
6.24e-88FFCP PHASE2:Hg19::chr19:32401274..32401289,-#_45ccae8a5e7ffdd8308d5127d411f176p@chr19:32401274..32401289, -
6.24e-88FFCP PHASE1:Hg19::chr22:36718586..36718593,-#_45ccae8a5e7ffdd8308d5127d411f176p@chr22:36718586..36718593, -
6.24e-88FFCP PHASE2:Hg19::chr21:40459334..40459341,+#_45ccae8a5e7ffdd8308d5127d411f176p@chr21:40459334..40459341, +
6.24e-88FFCP PHASE1:Hg19::chr11:56859722..56859732,-#_45ccae8a5e7ffdd8308d5127d411f176p@chr11:56859722..56859732, -
6.24e-88FFCP PHASE2:Hg19::chr11:56859722..56859732,-#_45ccae8a5e7ffdd8308d5127d411f176p@chr11:56859722..56859732, -
6.24e-88FFCP PHASE1:Hg19::chr4:146461014..146461025,+#_45ccae8a5e7ffdd8308d5127d411f176p@chr4:146461014..146461025, +
6.24e-88FFCP PHASE1:Hg19::chr3:130267501..130267516,+#_45ccae8a5e7ffdd8308d5127d411f176p@chr3:130267501..130267516, +
6.24e-88FFCP PHASE1:Hg19::chr9:127267367..127267383,+#_45ccae8a5e7ffdd8308d5127d411f176p@chr9:127267367..127267383, +
6.24e-88FFCP PHASE1:Hg19::chr1:21011608..21011618,-#_45ccae8a5e7ffdd8308d5127d411f176p15@KIF17
6.24e-88FFCP PHASE2:Hg19::chr22:36718586..36718593,-#_45ccae8a5e7ffdd8308d5127d411f176p@chr22:36718586..36718593, -
6.24e-88FFCP PHASE1:Hg19::chr19:32401274..32401289,-#_45ccae8a5e7ffdd8308d5127d411f176p@chr19:32401274..32401289, -
6.24e-88FFCP PHASE1:Hg19::chr21:40459334..40459341,+#_45ccae8a5e7ffdd8308d5127d411f176p@chr21:40459334..40459341, +
6.24e-88FFCP PHASE2:Hg19::chr9:127267367..127267383,+#_45ccae8a5e7ffdd8308d5127d411f176p@chr9:127267367..127267383, +
6.24e-88FFCP PHASE2:Hg19::chr4:146461014..146461025,+#_45ccae8a5e7ffdd8308d5127d411f176p@chr4:146461014..146461025, +
6.24e-88FFCP PHASE2:Hg19::chr3:130267501..130267516,+#_45ccae8a5e7ffdd8308d5127d411f176p@chr3:130267501..130267516, +
9.74e-88FFCP PHASE2:Hg19::chr16:70680361..70680370,+#_566ed821600d60a7078cda2ba503c55bp6@IL34
9.74e-88FFCP PHASE1:Hg19::chr12:72481040..72481051,+#_566ed821600d60a7078cda2ba503c55bp19@TRHDE
9.74e-88FFCP PHASE1:Hg19::chr14:24168655..24168686,+#_566ed821600d60a7078cda2ba503c55bp@chr14:24168655..24168686, +
9.74e-88FFCP PHASE1:Hg19::chr2:1508349..1508357,+#_566ed821600d60a7078cda2ba503c55bp@chr2:1508349..1508357, +
9.74e-88FFCP PHASE2:Hg19::chr12:72481040..72481051,+#_566ed821600d60a7078cda2ba503c55bp19@TRHDE
9.74e-88FFCP PHASE1:Hg19::chr16:70680361..70680370,+#_566ed821600d60a7078cda2ba503c55bp6@IL34
9.74e-88FFCP PHASE2:Hg19::chr2:128321491..128321509,+#_566ed821600d60a7078cda2ba503c55bp@chr2:128321491..128321509, +
9.74e-88FFCP PHASE2:Hg19::chr14:24168655..24168686,+#_566ed821600d60a7078cda2ba503c55bp@chr14:24168655..24168686, +
9.74e-88FFCP PHASE2:Hg19::chr7:151070957..151070988,+#_566ed821600d60a7078cda2ba503c55bp@chr7:151070957..151070988, +
9.74e-88FFCP PHASE2:Hg19::chr2:1508349..1508357,+#_566ed821600d60a7078cda2ba503c55bp@chr2:1508349..1508357, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0009034&oldid=3274628"