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{{CL
{{CL
|id=CL:0000047
|alt_id=
|name=neuronal stem cell
|namespace=efo
|def="Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, http://en.wikipedia.org/wiki/Neural_stem_cell, MESH:D058953, PMID:15247488]
|xref=BTO:0002881;;FMA:86684
|is_a=CL:0000034;;CL:0000048
|synonym="neural stem cell" EXACT [];;"NSC" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, http://en.wikipedia.org/wiki/Neural_stem_cell, MESH:D058953, PMID:15247488]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000133
|develops_from=CL:0000133
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000047
|is_a=CL:0000048 ;;CL:0002319
|is_obsolete=
|located_in=
|located_in=
|name=neuronal stem cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001017
|part_of=UBERON:0001017
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="neural stem cell" EXACT [];;"NSC" EXACT []
|union_of=
|xref=BTO:0002881;;FMA:86684
}}
}}

Latest revision as of 16:28, 12 September 2014

Name:neuronal stem cell
Namespace:FANTOM
Definition:"Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, http://en.wikipedia.org/wiki/Neural_stem_cell, MESH:D058953, PMID:15247488]
Xrefs:
links:

BTO:0002881

FMA:86684
Synonyms: "neural stem cell" EXACT []
"NSC" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000048(multi fate stem cell),CL:0002319(neural cell)
develops_from:CL:0000133(neurectodermal cell)
part_of:UBERON:0001017(central nervous system)



Children


is a:CL:0000031 (neuroblast)
derives from:FF:0000120 (human neural stem cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000047 (neuronal stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.33e-86FFCP PHASE2:Hg19::chr12:86727911..86727925,-#_5694c65be0e63fe2317cda232095142ep@chr12:86727911..86727925, -
4.33e-86FFCP PHASE1:Hg19::chr12:86727911..86727925,-#_5694c65be0e63fe2317cda232095142ep@chr12:86727911..86727925, -
4.74e-79FFCP PHASE2:Hg19::chr9:100199938..100199951,-#_9b01687514c12af442aadfe29e56ded5p@chr9:100199938..100199951, -
4.74e-79FFCP PHASE1:Hg19::chr9:76707423..76707428,+#_9b01687514c12af442aadfe29e56ded5p@chr9:76707423..76707428, +
4.74e-79FFCP PHASE1:Hg19::chr9:100199938..100199951,-#_9b01687514c12af442aadfe29e56ded5p@chr9:100199938..100199951, -
4.74e-79FFCP PHASE2:Hg19::chr9:76707423..76707428,+#_9b01687514c12af442aadfe29e56ded5p@chr9:76707423..76707428, +
3.11e-74FFCP PHASE1:Hg19::chr6:18759117..18759122,-#_0fe4ae294ffafb473460bef2c47daefcp@chr6:18759117..18759122, -
3.11e-74FFCP PHASE1:Hg19::chr10:74804784..74804793,-#_0fe4ae294ffafb473460bef2c47daefcp@chr10:74804784..74804793, -
3.11e-74FFCP PHASE1:Hg19::chr7:89853761..89853768,+#_0fe4ae294ffafb473460bef2c47daefcp@chr7:89853761..89853768, +
3.11e-74FFCP PHASE2:Hg19::chr3:162430587..162430591,+#_0fe4ae294ffafb473460bef2c47daefcp@chr3:162430587..162430591, +
3.11e-74FFCP PHASE2:Hg19::chr7:93269596..93269602,+#_0fe4ae294ffafb473460bef2c47daefcp@chr7:93269596..93269602, +
3.11e-74FFCP PHASE1:Hg19::chr8:494169..494176,+#_0fe4ae294ffafb473460bef2c47daefcp@chr8:494169..494176, +
3.11e-74FFCP PHASE2:Hg19::chr12:23738971..23738975,+#_0fe4ae294ffafb473460bef2c47daefcp@chr12:23738971..23738975, +
3.11e-74FFCP PHASE2:Hg19::chr6:121759714..121759721,+#_0fe4ae294ffafb473460bef2c47daefcp@chr6:121759714..121759721, +
3.11e-74FFCP PHASE2:Hg19::chr10:63305248..63305260,-#_0fe4ae294ffafb473460bef2c47daefcp@chr10:63305248..63305260, -
3.11e-74FFCP PHASE2:Hg19::chr7:89853761..89853768,+#_0fe4ae294ffafb473460bef2c47daefcp@chr7:89853761..89853768, +
3.11e-74FFCP PHASE1:Hg19::chr12:23738971..23738975,+#_0fe4ae294ffafb473460bef2c47daefcp@chr12:23738971..23738975, +
3.11e-74FFCP PHASE1:Hg19::chr6:121759714..121759721,+#_0fe4ae294ffafb473460bef2c47daefcp@chr6:121759714..121759721, +
3.11e-74FFCP PHASE2:Hg19::chr6:18759117..18759122,-#_0fe4ae294ffafb473460bef2c47daefcp@chr6:18759117..18759122, -
3.11e-74FFCP PHASE2:Hg19::chr8:494169..494176,+#_0fe4ae294ffafb473460bef2c47daefcp@chr8:494169..494176, +
3.11e-74FFCP PHASE1:Hg19::chr7:93269596..93269602,+#_0fe4ae294ffafb473460bef2c47daefcp@chr7:93269596..93269602, +
3.11e-74FFCP PHASE2:Hg19::chr10:74804784..74804793,-#_0fe4ae294ffafb473460bef2c47daefcp@chr10:74804784..74804793, -
3.11e-74FFCP PHASE2:Hg19::chr1:178235815..178235824,-#_0fe4ae294ffafb473460bef2c47daefcp@chr1:178235815..178235824, -
3.11e-74FFCP PHASE1:Hg19::chr3:162430587..162430591,+#_0fe4ae294ffafb473460bef2c47daefcp@chr3:162430587..162430591, +
3.11e-74FFCP PHASE1:Hg19::chr1:178235815..178235824,-#_0fe4ae294ffafb473460bef2c47daefcp@chr1:178235815..178235824, -
3.11e-74FFCP PHASE1:Hg19::chr10:63305248..63305260,-#_0fe4ae294ffafb473460bef2c47daefcp@chr10:63305248..63305260, -
2.87e-71FFCP PHASE2:Hg19::chr1:33231268..33231284,+#_b6e96031b2ffb2ed36f92a7f84babd7fp20@KIAA1522
2.87e-71FFCP PHASE1:Hg19::chr1:33231268..33231284,+#_b6e96031b2ffb2ed36f92a7f84babd7fp20@KIAA1522
2.2e-70FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_73a69d768287c47c29653b27ae7ec19bp@chr8:125944624..125944663, +
2.2e-70FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_73a69d768287c47c29653b27ae7ec19bp@chr8:125944624..125944663, +
1.41e-68FFCP PHASE2:Hg19::chr7:137030541..137030575,-#_de949a643fb51487a5f76a8e86f382aap@chr7:137030541..137030575, -
1.41e-68FFCP PHASE1:Hg19::chr7:137030541..137030575,-#_de949a643fb51487a5f76a8e86f382aap@chr7:137030541..137030575, -
2.46e-68FFCP PHASE1:Hg19::chr17:76266195..76266208,-#_15b2727f9d999c0cc6a1611ef6d2370cp@chr17:76266195..76266208, -
2.46e-68FFCP PHASE2:Hg19::chr17:76266195..76266208,-#_15b2727f9d999c0cc6a1611ef6d2370cp@chr17:76266195..76266208, -
7.15e-66FFCP PHASE2:Hg19::chrX:91359754..91359757,-#_8860963d02cc21928a5d45d71f461661p2@ENST00000540909, p2@uc004efp.1
7.15e-66FFCP PHASE1:Hg19::chrX:91359754..91359757,-#_8860963d02cc21928a5d45d71f461661p2@ENST00000540909, p2@uc004efp.1
1.0e-65FFCP PHASE1:Hg19::chr3:38289177..38289184,+#_a3ee4aaad50f1221b7078bb39f7050fcp@chr3:38289177..38289184, +
1.0e-65FFCP PHASE2:Hg19::chr3:38289177..38289184,+#_a3ee4aaad50f1221b7078bb39f7050fcp@chr3:38289177..38289184, +
4.4e-62FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_e8e28732d38f1c59865d9413f49e11d0p@chr1:142537912..142537938, -
4.4e-62FFCP PHASE1:Hg19::chr20:20472232..20472244,-#_e8e28732d38f1c59865d9413f49e11d0p@chr20:20472232..20472244, -
4.4e-62FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_e8e28732d38f1c59865d9413f49e11d0p@chr1:142537912..142537938, -
4.4e-62FFCP PHASE2:Hg19::chr20:20472232..20472244,-#_e8e28732d38f1c59865d9413f49e11d0p@chr20:20472232..20472244, -
4.99e-62FFCP PHASE2:Hg19::chr2:104496621..104496635,-#_b599d0aed75757bd60b683f9983d5326p1@ENST00000455716
4.99e-62FFCP PHASE1:Hg19::chr2:104496621..104496635,-#_b599d0aed75757bd60b683f9983d5326p1@ENST00000455716
2.25e-61FFCP PHASE1:Hg19::chr5:135540733..135540788,-#_5245a1ec3e36d094dfee72602e301cb0p@chr5:135540733..135540788, -
2.25e-61FFCP PHASE2:Hg19::chr5:135540733..135540788,-#_5245a1ec3e36d094dfee72602e301cb0p@chr5:135540733..135540788, -
1.11e-58FFCP PHASE2:Mm9::chr7:109167666..109167667,+#_dc851c3cc86c0372ad56686e7f321e20p@chr7:109167666..109167667, +
1.11e-58FFCP PHASE1:Mm9::chr7:109167666..109167667,+#_dc851c3cc86c0372ad56686e7f321e20p@chr7:109167666..109167667, +
1.97e-58FFCP PHASE1:Hg19::chr21:33976809..33976828,-#_4ab225861a104b3242e19a6b528186e1p9@C21orf59
1.97e-58FFCP PHASE2:Hg19::chr21:33976809..33976828,-#_4ab225861a104b3242e19a6b528186e1p9@C21orf59
5.77e-57FFCP PHASE1:Hg19::chr7:23146271..23146285,+#_28b60dbf5b6a196a59c10e56f82ec1b3p4@KLHL7
5.77e-57FFCP PHASE2:Hg19::chr7:23146271..23146285,+#_28b60dbf5b6a196a59c10e56f82ec1b3p4@KLHL7
5.95e-57FFCP PHASE2:Hg19::chr6:88877062..88877073,-#_ff2c066a000af62ef1d3ab1212dd2f2bp3@BC037581
5.95e-57FFCP PHASE1:Hg19::chr6:88877062..88877073,-#_ff2c066a000af62ef1d3ab1212dd2f2bp3@BC037581
9.15e-57FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_dd4dc1de5ebf75cd9e4298b830bce8aap@chr1:142537706..142537723, -
9.15e-57FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_dd4dc1de5ebf75cd9e4298b830bce8aap@chr1:142537706..142537723, -
1.63e-56FFCP PHASE1:Hg19::chr17:37763867..37763873,-#_cc3a349665c6d5e6e9adbc908a6ee347p@chr17:37763867..37763873, -
1.63e-56FFCP PHASE2:Hg19::chr17:37763867..37763873,-#_cc3a349665c6d5e6e9adbc908a6ee347p@chr17:37763867..37763873, -
2.85e-56FFCP PHASE2:Hg19::chr11:30605486..30605499,-#_d3302a323805fd0de0c22782adacf9bap@chr11:30605486..30605499, -
2.85e-56FFCP PHASE1:Hg19::chr11:30605486..30605499,-#_d3302a323805fd0de0c22782adacf9bap@chr11:30605486..30605499, -
4.57e-56FFCP PHASE2:Hg19::chr3:65939393..65939412,+#_c54670b23ee0d2b7accb3f19251de48bp@chr3:65939393..65939412, +
4.57e-56FFCP PHASE1:Hg19::chr3:65939393..65939412,+#_c54670b23ee0d2b7accb3f19251de48bp@chr3:65939393..65939412, +
4.57e-56FFCP PHASE1:Hg19::chr7:125557914..125557920,+#_c54670b23ee0d2b7accb3f19251de48bp1@ENST00000411856
4.57e-56FFCP PHASE2:Hg19::chr4:187163434..187163439,+#_c54670b23ee0d2b7accb3f19251de48bp@chr4:187163434..187163439, +
4.57e-56FFCP PHASE2:Hg19::chr2:210164412..210164415,+#_c54670b23ee0d2b7accb3f19251de48bp@chr2:210164412..210164415, +
4.57e-56FFCP PHASE1:Hg19::chr4:113571661..113571692,-#_c54670b23ee0d2b7accb3f19251de48bp1@ENST00000510655
4.57e-56FFCP PHASE1:Hg19::chr4:187163434..187163439,+#_c54670b23ee0d2b7accb3f19251de48bp@chr4:187163434..187163439, +
4.57e-56FFCP PHASE1:Hg19::chr2:210164412..210164415,+#_c54670b23ee0d2b7accb3f19251de48bp@chr2:210164412..210164415, +
4.57e-56FFCP PHASE2:Hg19::chr7:125557914..125557920,+#_c54670b23ee0d2b7accb3f19251de48bp1@ENST00000411856
4.57e-56FFCP PHASE2:Hg19::chr1:232254205..232254216,+#_c54670b23ee0d2b7accb3f19251de48bp@chr1:232254205..232254216, +
4.57e-56FFCP PHASE1:Hg19::chr1:232254205..232254216,+#_c54670b23ee0d2b7accb3f19251de48bp@chr1:232254205..232254216, +
4.57e-56FFCP PHASE2:Hg19::chr4:113571661..113571692,-#_c54670b23ee0d2b7accb3f19251de48bp1@ENST00000510655
5.05e-56FFCP PHASE1:Hg19::chr2:197791691..197791702,-#_7c662ded092fff9bc23655780ce3d16fp8@PGAP1
5.05e-56FFCP PHASE2:Hg19::chr2:197791691..197791702,-#_7c662ded092fff9bc23655780ce3d16fp8@PGAP1
5.52e-56FFCP PHASE1:Hg19::chr13:93868779..93868791,+#_6b88c2382bf2fda0e56e296b1827bdfep@chr13:93868779..93868791, +
5.52e-56FFCP PHASE2:Hg19::chr13:93868779..93868791,+#_6b88c2382bf2fda0e56e296b1827bdfep@chr13:93868779..93868791, +
5.52e-56FFCP PHASE2:Hg19::chr22:27038766..27038806,-#_6b88c2382bf2fda0e56e296b1827bdfep@chr22:27038766..27038806, -
5.52e-56FFCP PHASE1:Hg19::chr22:27038766..27038806,-#_6b88c2382bf2fda0e56e296b1827bdfep@chr22:27038766..27038806, -
6.66e-56FFCP PHASE1:Hg19::chr6:132234089..132234094,+#_b18196984334497e3b448f0e26fcd29ep@chr6:132234089..132234094, +
6.66e-56FFCP PHASE2:Hg19::chr6:132234089..132234094,+#_b18196984334497e3b448f0e26fcd29ep@chr6:132234089..132234094, +
8.04e-56FFCP PHASE1:Hg19::chrX:16141567..16141572,+#_bf0379266b3830f55e776cdc84996230p4@GRPR
8.04e-56FFCP PHASE2:Hg19::chrX:16141567..16141572,+#_bf0379266b3830f55e776cdc84996230p4@GRPR
8.04e-56FFCP PHASE1:Hg19::chr13:54688155..54688160,-#_bf0379266b3830f55e776cdc84996230p@chr13:54688155..54688160, -
8.04e-56FFCP PHASE2:Hg19::chr13:54688155..54688160,-#_bf0379266b3830f55e776cdc84996230p@chr13:54688155..54688160, -
1.12e-55FFCP PHASE1:Hg19::chr6:98264504..98264513,+#_498d3c25af995228e46c138d50aa78ecp@chr6:98264504..98264513, +
1.12e-55FFCP PHASE2:Hg19::chr6:98264504..98264513,+#_498d3c25af995228e46c138d50aa78ecp@chr6:98264504..98264513, +
1.99e-55FFCP PHASE1:Hg19::chr5:146257992..146258003,-#_3c440aa684f8f36775deb8c750eb50b1p18@PPP2R2B
1.99e-55FFCP PHASE2:Hg19::chr5:146257992..146258003,-#_3c440aa684f8f36775deb8c750eb50b1p18@PPP2R2B
3.23e-55FFCP PHASE2:Hg19::chr8:39759861..39759881,+#_74c46c59d01479efeb567939d6cfcd51p3@IDO1
3.23e-55FFCP PHASE1:Hg19::chr8:39759861..39759881,+#_74c46c59d01479efeb567939d6cfcd51p3@IDO1
8.29e-55FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_4e98a3d58c5fe8e40c038beabcb95cb3p22@Zmiz1
8.29e-55FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_4e98a3d58c5fe8e40c038beabcb95cb3p22@Zmiz1
2.41e-54FFCP PHASE2:Mm9::chr13:9279895..9279899,+#_797ddd90e2b92a2fb2ae060998f709abp@chr13:9279895..9279899, +
2.41e-54FFCP PHASE1:Mm9::chr13:9279895..9279899,+#_797ddd90e2b92a2fb2ae060998f709abp@chr13:9279895..9279899, +
3.73e-51FFCP PHASE1:Hg19::chrX:110654147..110654194,-#_2024da4ed788d3a0ad0c35151b59af43p4@DCX
3.73e-51FFCP PHASE2:Hg19::chrX:110654147..110654194,-#_2024da4ed788d3a0ad0c35151b59af43p4@DCX
1.31e-50FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_e1e4a0b048fe46695dc0b71b14fad239p@chr8:125944694..125944740, +
1.31e-50FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_e1e4a0b048fe46695dc0b71b14fad239p@chr8:125944694..125944740, +
1.38e-50FFCP PHASE2:Mm9::chr3:55849731..55849735,-#_dec3f1c97a68a95798ef081f1f8885a1p@chr3:55849731..55849735, -
1.38e-50FFCP PHASE1:Mm9::chr3:55849731..55849735,-#_dec3f1c97a68a95798ef081f1f8885a1p@chr3:55849731..55849735, -

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