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{{CL
{{CL
|id=CL:0000076
|alt_id=
|name=squamous epithelial cell
|namespace=cell
|def=
|xref=
|is_a=CL:0000066
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000076
|is_a=CL:0000066
|is_obsolete=
|located_in=
|located_in=
|name=squamous epithelial cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:29, 12 September 2014

Name:squamous epithelial cell
Namespace:FANTOM


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000066(epithelial cell)



Children


is a:CL:0000071 (blood vessel endothelial cell),CL:0000077 (mesothelial cell),CL:0000240 (stratified squamous epithelial cell),CL:0000575 (corneal epithelial cell)
derives from:FF:0102024 (squamous cell carcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000076 (squamous epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.01e-41FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_0ed4a3c11d68531ab3c730242386966dp@chr18:33046982..33046991, -
4.01e-41FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_0ed4a3c11d68531ab3c730242386966dp@chr18:33046982..33046991, -
7.09e-34FFCP PHASE2:Hg19::chr7:139741849..139741879,-#_21c9d8faeb544156c0acf9c3d540b5f7p12@PARP12
7.09e-34FFCP PHASE1:Hg19::chr7:139741849..139741879,-#_21c9d8faeb544156c0acf9c3d540b5f7p12@PARP12
9.9e-34FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_f7d3f6d1aaed2da2f1a7610cd6caf578p1@MIR216A
9.9e-34FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_f7d3f6d1aaed2da2f1a7610cd6caf578p1@MIR216A
6.61e-33FFCP PHASE2:Hg19::chr6:78171774..78171792,+#_1f80586e1ef999f3c0c6b65cd342e5aep@chr6:78171774..78171792, +
6.61e-33FFCP PHASE1:Hg19::chr6:78171774..78171792,+#_1f80586e1ef999f3c0c6b65cd342e5aep@chr6:78171774..78171792, +
1.58e-32FFCP PHASE1:Hg19::chr18:33047157..33047168,-#_fb04eb88c2f920e0333da37d7ebc4935p@chr18:33047157..33047168, -
1.58e-32FFCP PHASE2:Hg19::chr18:33047157..33047168,-#_fb04eb88c2f920e0333da37d7ebc4935p@chr18:33047157..33047168, -
6.55e-32FFCP PHASE1:Hg19::chr7:139741594..139741615,-#_2ac036d005a688273a47f675e89a1d9cp5@PARP12
6.55e-32FFCP PHASE2:Hg19::chr7:139741594..139741615,-#_2ac036d005a688273a47f675e89a1d9cp5@PARP12
9.29e-32FFCP PHASE2:Hg19::chr4:145566874..145566889,+#_2c18878af97a00b3739503da5db0320bp15@HHIP
9.29e-32FFCP PHASE1:Hg19::chr4:145566874..145566889,+#_2c18878af97a00b3739503da5db0320bp15@HHIP
1.88e-31FFCP PHASE1:Hg19::chr12:118112251..118112272,-#_51c9b7cb826be7d7e7ae4dc83fef876dp12@KSR2
1.88e-31FFCP PHASE2:Hg19::chr12:118112251..118112272,-#_51c9b7cb826be7d7e7ae4dc83fef876dp12@KSR2
2.75e-31FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_9603a88e17fc5739dee25f2a94fa40fap@chr3:43538305..43538325, -
2.75e-31FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_9603a88e17fc5739dee25f2a94fa40fap@chr3:43538305..43538325, -
6.38e-30FFCP PHASE2:Hg19::chr10:50153703..50153720,+#_877b0fb89ec378bb607eb84a4f4ee232p7@WDFY4
6.38e-30FFCP PHASE1:Hg19::chr10:50153703..50153720,+#_877b0fb89ec378bb607eb84a4f4ee232p7@WDFY4
1.0e-29FFCP PHASE2:Hg19::chr2:36796813..36796868,-#_b50bdd8d9695786eadb876f4902559f7p@chr2:36796813..36796868, -
1.0e-29FFCP PHASE1:Hg19::chr2:36796813..36796868,-#_b50bdd8d9695786eadb876f4902559f7p@chr2:36796813..36796868, -
1.02e-29FFCP PHASE2:Hg19::chrX:71299684..71299699,+#_49b93ce8a0ee42a61ec0cc5232925282p@chrX:71299684..71299699, +
1.02e-29FFCP PHASE1:Hg19::chrX:71299684..71299699,+#_49b93ce8a0ee42a61ec0cc5232925282p@chrX:71299684..71299699, +
3.22e-29FFCP PHASE1:Hg19::chr10:50153735..50153750,+#_0d041820adea83f09ddf3ecfe51a0960p6@WDFY4
3.22e-29FFCP PHASE2:Hg19::chr10:50153735..50153750,+#_0d041820adea83f09ddf3ecfe51a0960p6@WDFY4
8.8e-29FFCP PHASE2:Hg19::chr12:7585997..7586021,-#_df5a511c5b99c4622cfec5295cc84239p@chr12:7585997..7586021, -
8.8e-29FFCP PHASE1:Hg19::chr12:7585997..7586021,-#_df5a511c5b99c4622cfec5295cc84239p@chr12:7585997..7586021, -
4.75e-28FFCP PHASE2:Hg19::chr12:52080755..52080778,+#_da53d6c497354c30ef8c80f812959a87p@chr12:52080755..52080778, +
4.75e-28FFCP PHASE1:Hg19::chr12:52080755..52080778,+#_da53d6c497354c30ef8c80f812959a87p@chr12:52080755..52080778, +
5.89e-28FFCP PHASE1:Hg19::chrX:15518894..15518905,+#_0c364aa7c4f5f5d73cd227ab2d0364bfp2@BMX
5.89e-28FFCP PHASE2:Hg19::chrX:15518894..15518905,+#_0c364aa7c4f5f5d73cd227ab2d0364bfp2@BMX
8.93e-28FFCP PHASE1:Hg19::chr3:58034268..58034295,+#_cc9b39523b734246ed242391c5adc946p@chr3:58034268..58034295, +
8.93e-28FFCP PHASE2:Hg19::chr3:58034268..58034295,+#_cc9b39523b734246ed242391c5adc946p@chr3:58034268..58034295, +
1.03e-27FFCP PHASE1:Hg19::chr14:75469820..75469826,+#_ae3c4d484c04d447ab1e0b7f100da36cp4@EIF2B2
1.03e-27FFCP PHASE2:Hg19::chr14:75469820..75469826,+#_ae3c4d484c04d447ab1e0b7f100da36cp4@EIF2B2
1.63e-27FFCP PHASE2:Hg19::chr7:150329732..150329739,-#_d58884ce6da3d6afec5c7b1a7563d7a5p8@GIMAP6
1.63e-27FFCP PHASE1:Hg19::chr7:150329732..150329739,-#_d58884ce6da3d6afec5c7b1a7563d7a5p8@GIMAP6
1.67e-27FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_563975f4f7926df22e7466727aa1f540p@chr6:3753188..3753192, -
1.67e-27FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_563975f4f7926df22e7466727aa1f540p@chr6:3753188..3753192, -
1.74e-27FFCP PHASE2:Hg19::chr12:12491541..12491552,-#_d92ed2676740ff8e9045a8e6c30fefa5p11@MANSC1
1.74e-27FFCP PHASE1:Hg19::chr12:12491541..12491552,-#_d92ed2676740ff8e9045a8e6c30fefa5p11@MANSC1
1.82e-27FFCP PHASE1:Hg19::chr6:148664333..148664338,-#_fbd328bfeddc6a91b3d27e98fc7219b0p@chr6:148664333..148664338, -
1.82e-27FFCP PHASE2:Hg19::chr6:148664333..148664338,-#_fbd328bfeddc6a91b3d27e98fc7219b0p@chr6:148664333..148664338, -
2.66e-27FFCP PHASE1:Hg19::chr10:99655692..99655725,-#_97f014acbb120c2e8d63e7b9f116b3f0p@chr10:99655692..99655725, -
2.66e-27FFCP PHASE2:Hg19::chr10:99655692..99655725,-#_97f014acbb120c2e8d63e7b9f116b3f0p@chr10:99655692..99655725, -
3.22e-27FFCP PHASE1:Hg19::chr1:6479968..6479986,-#_46fa6aa3df0fc3b97a8e0de4cee72851p1@HES2
3.22e-27FFCP PHASE2:Hg19::chr1:6479968..6479986,-#_46fa6aa3df0fc3b97a8e0de4cee72851p1@HES2
4.93e-27FFCP PHASE2:Hg19::chr5:95920642..95920681,+#_f8acf7b16fcd3176da153a868ee46c8ep1@ENST00000513158
4.93e-27FFCP PHASE1:Hg19::chr5:95920642..95920681,+#_f8acf7b16fcd3176da153a868ee46c8ep1@ENST00000513158
5.58e-27FFCP PHASE1:Hg19::chr15:83953373..83953386,-#_719128b844eb9b27c80be91b440bb79ep2@BNC1
5.58e-27FFCP PHASE2:Hg19::chr15:83953373..83953386,-#_719128b844eb9b27c80be91b440bb79ep2@BNC1
5.61e-27FFCP PHASE2:Hg19::chr9:139563124..139563129,+#_4fb42e1a4c5e6ea025f2f7307495589ep@chr9:139563124..139563129, +
5.61e-27FFCP PHASE1:Hg19::chr9:139563124..139563129,+#_4fb42e1a4c5e6ea025f2f7307495589ep@chr9:139563124..139563129, +
8.05e-27FFCP PHASE1:Hg19::chr12:80084018..80084035,-#_322da4dbda8d3e86f555b571a24a4ab3p17@PAWR
8.05e-27FFCP PHASE2:Hg19::chr12:80084018..80084035,-#_322da4dbda8d3e86f555b571a24a4ab3p17@PAWR
1.95e-26FFCP PHASE2:Hg19::chr19:38794797..38794810,+#_845ea808f255b47cfc5d42bdf1a95055p2@C19orf33
1.95e-26FFCP PHASE1:Hg19::chr19:38794797..38794810,+#_845ea808f255b47cfc5d42bdf1a95055p2@C19orf33
2.17e-26FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_bc1fffa18a848f9e946a25d45d9ad5f2p@chr6:78171746..78171769, +
2.17e-26FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_bc1fffa18a848f9e946a25d45d9ad5f2p@chr6:78171746..78171769, +
3.65e-26FFCP PHASE2:Hg19::chr7:150690812..150690817,+#_845805177440e0cf29a0415a0bf011fdp10@NOS3
3.65e-26FFCP PHASE1:Hg19::chr7:150690812..150690817,+#_845805177440e0cf29a0415a0bf011fdp10@NOS3
4.74e-26FFCP PHASE2:Hg19::chr5:176433333..176433349,-#_aabc9b6bbda6e0b45ce5c1775cf22ceap11@UIMC1
4.74e-26FFCP PHASE1:Hg19::chr5:176433333..176433349,-#_aabc9b6bbda6e0b45ce5c1775cf22ceap11@UIMC1
8.11e-26FFCP PHASE1:Hg19::chr2:237076069..237076110,+#_c7f735a7f852d3026af7d5d8d7ff93e8p1@ENST00000415226, p1@ENST00000483218
8.11e-26FFCP PHASE2:Hg19::chr2:237076069..237076110,+#_c7f735a7f852d3026af7d5d8d7ff93e8p1@ENST00000415226, p1@ENST00000483218
8.2e-26FFCP PHASE2:Hg19::chr5:34656634..34656645,+#_bcd7c391f2720e76cb51e5a6b6b171a7p15@RAI14
8.2e-26FFCP PHASE1:Hg19::chr5:34656634..34656645,+#_bcd7c391f2720e76cb51e5a6b6b171a7p15@RAI14
1.05e-25FFCP PHASE2:Hg19::chr4:79472785..79472796,+#_c335fc4dfe78663ea9dcd5402233dc2fp3@ANXA3
1.05e-25FFCP PHASE1:Hg19::chr4:79472785..79472796,+#_c335fc4dfe78663ea9dcd5402233dc2fp3@ANXA3
1.3e-25FFCP PHASE1:Hg19::chr14:38725228..38725236,-#_db378bfc394b48cb1d70b6be1cabb0c4p5@CLEC14A
1.3e-25FFCP PHASE2:Hg19::chr14:38725228..38725236,-#_db378bfc394b48cb1d70b6be1cabb0c4p5@CLEC14A
1.81e-25FFCP PHASE1:Hg19::chr13:34727644..34727660,-#_8e9e1ce60b3a6783ce841cfecc0da953p@chr13:34727644..34727660, -
1.81e-25FFCP PHASE2:Hg19::chr13:34727644..34727660,-#_8e9e1ce60b3a6783ce841cfecc0da953p@chr13:34727644..34727660, -
1.89e-25FFCP PHASE1:Hg19::chr14:59830398..59830424,+#_8787713b364ac162d31ba17533329fa9p@chr14:59830398..59830424, +
1.89e-25FFCP PHASE2:Hg19::chr14:59830398..59830424,+#_8787713b364ac162d31ba17533329fa9p@chr14:59830398..59830424, +
3.02e-25FFCP PHASE1:Hg19::chr17:62084108..62084111,-#_6b1de2495f8f8caffbdad2c6b3189064p5@ICAM2
3.02e-25FFCP PHASE2:Hg19::chr17:62084108..62084111,-#_6b1de2495f8f8caffbdad2c6b3189064p5@ICAM2
3.33e-25FFCP PHASE1:Hg19::chr1:22264210..22264241,+#_106ff8f439e2e68230245f0532389b38p@chr1:22264210..22264241, +
3.33e-25FFCP PHASE2:Hg19::chr1:22264210..22264241,+#_106ff8f439e2e68230245f0532389b38p@chr1:22264210..22264241, +
4.29e-25FFCP PHASE2:Hg19::chr6:11607864..11607875,+#_2df8e7e4db5c5b50ab0e56e7a2643c23p@chr6:11607864..11607875, +
4.29e-25FFCP PHASE1:Hg19::chr6:11607864..11607875,+#_2df8e7e4db5c5b50ab0e56e7a2643c23p@chr6:11607864..11607875, +
5.52e-25FFCP PHASE1:Hg19::chr11:124761247..124761258,-#_54dfbb7bee2eda40a5b4936af4cfeb28p@chr11:124761247..124761258, -
5.52e-25FFCP PHASE2:Hg19::chr11:124761247..124761258,-#_54dfbb7bee2eda40a5b4936af4cfeb28p@chr11:124761247..124761258, -
6.31e-25FFCP PHASE2:Hg19::chr12:105863705..105863718,+#_c6e6f33d3550cbbf8598d56841c42aafp@chr12:105863705..105863718, +
6.31e-25FFCP PHASE1:Hg19::chr12:105863705..105863718,+#_c6e6f33d3550cbbf8598d56841c42aafp@chr12:105863705..105863718, +
1.14e-24FFCP PHASE1:Hg19::chr14:38725249..38725254,-#_42721c056c76554b37d35754d8a2f6ccp6@CLEC14A
1.14e-24FFCP PHASE2:Hg19::chr14:38725249..38725254,-#_42721c056c76554b37d35754d8a2f6ccp6@CLEC14A
1.17e-24FFCP PHASE1:Hg19::chr9:139541134..139541139,+#_bc81f65ec8986fb32300dd8cb0cd8044p@chr9:139541134..139541139, +
1.17e-24FFCP PHASE2:Hg19::chr9:139541134..139541139,+#_bc81f65ec8986fb32300dd8cb0cd8044p@chr9:139541134..139541139, +
1.26e-24FFCP PHASE2:Hg19::chr4:85791667..85791699,-#_d2c2751de3411d62611dc2a982d901bdp@chr4:85791667..85791699, -
1.26e-24FFCP PHASE1:Hg19::chr4:85791667..85791699,-#_d2c2751de3411d62611dc2a982d901bdp@chr4:85791667..85791699, -
1.58e-24FFCP PHASE1:Hg19::chr3:148599249..148599271,+#_e164af0010c15f8c119e11b4390307dap2@CPA3
1.58e-24FFCP PHASE2:Hg19::chr3:148599249..148599271,+#_e164af0010c15f8c119e11b4390307dap2@CPA3
2.44e-24FFCP PHASE2:Hg19::chr9:139543445..139543462,+#_bee8f1ee1f75580ecd6fbf1c1444478ep@chr9:139543445..139543462, +
2.44e-24FFCP PHASE1:Hg19::chr9:139543445..139543462,+#_bee8f1ee1f75580ecd6fbf1c1444478ep@chr9:139543445..139543462, +
3.04e-24FFCP PHASE2:Hg19::chr12:96830523..96830532,+#_2dd2e9ea65514429f8e1249171cdc194p@chr12:96830523..96830532, +
3.04e-24FFCP PHASE1:Hg19::chr12:96830523..96830532,+#_2dd2e9ea65514429f8e1249171cdc194p@chr12:96830523..96830532, +
4.4e-24FFCP PHASE1:Hg19::chr20:50721803..50721857,-#_472ce9d5f9f4a873e546b50f9da9b96ap2@ZFP64
4.4e-24FFCP PHASE2:Hg19::chr20:50721803..50721857,-#_472ce9d5f9f4a873e546b50f9da9b96ap2@ZFP64

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