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{{CL
{{CL
|id=CL:0000120
|alt_id=
|name=granule cell
|namespace=cell
|def=
|xref=BTO:0003393
|is_a=CL:0000117
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000120
|is_a=CL:0000117
|is_obsolete=
|located_in=
|located_in=
|name=granule cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0003393
}}
}}

Latest revision as of 16:30, 12 September 2014

Name:granule cell
Namespace:FANTOM
Xrefs:
links:
BTO:0003393


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000117(CNS neuron (sensu Vertebrata))



Children


is a:CL:0001031 (cerebellar granule cell)
derives from:FF:0000108 (mouse granule cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000120 (granule cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.33e-65FFCP PHASE2:Mm9::chr1:122498982..122498991,+#_467d6d2a4609b7cfd3223c0f9a60b555p3@En1
1.33e-65FFCP PHASE1:Mm9::chr1:122498982..122498991,+#_467d6d2a4609b7cfd3223c0f9a60b555p3@En1
1.18e-44FFCP PHASE2:Mm9::chr5:120881939..120881946,+#_17f23baa4aa36678d189f675d321791bp2@Lhx5
1.18e-44FFCP PHASE1:Mm9::chr5:120881918..120881921,+#_17f23baa4aa36678d189f675d321791bp5@Lhx5
1.18e-44FFCP PHASE2:Mm9::chr5:120881918..120881921,+#_17f23baa4aa36678d189f675d321791bp5@Lhx5
1.18e-44FFCP PHASE1:Mm9::chr5:120881939..120881946,+#_17f23baa4aa36678d189f675d321791bp2@Lhx5
3.27e-44FFCP PHASE2:Mm9::chr13:40821195..40821200,-#_3e9c99abdb7dd989e282cd2b6becbd41p@chr13:40821195..40821200, -
3.27e-44FFCP PHASE1:Mm9::chr13:40821195..40821200,-#_3e9c99abdb7dd989e282cd2b6becbd41p@chr13:40821195..40821200, -
8.97e-44FFCP PHASE1:Mm9::chr18:46372467..46372475,-#_a08aa737a691508504cc5ce959a50a01p7@Trim36
8.97e-44FFCP PHASE1:Mm9::chr18:42554021..42554024,+#_a08aa737a691508504cc5ce959a50a01p2@Pou4f3
8.97e-44FFCP PHASE2:Mm9::chr18:46372467..46372475,-#_a08aa737a691508504cc5ce959a50a01p7@Trim36
8.97e-44FFCP PHASE2:Mm9::chr18:42554021..42554024,+#_a08aa737a691508504cc5ce959a50a01p2@Pou4f3
2.79e-38FFCP PHASE2:Mm9::chr13:95587649..95587666,+#_33e34b9ea21de9de112979239594de4bp@chr13:95587649..95587666, +
2.79e-38FFCP PHASE1:Mm9::chr13:95587649..95587666,+#_33e34b9ea21de9de112979239594de4bp@chr13:95587649..95587666, +
2.79e-38FFCP PHASE2:Mm9::chr6:138375213..138375222,-#_33e34b9ea21de9de112979239594de4bp19@Lmo3
2.79e-38FFCP PHASE1:Mm9::chr6:138375213..138375222,-#_33e34b9ea21de9de112979239594de4bp19@Lmo3
6.64e-38FFCP PHASE1:Mm9::chr5:28536607..28536622,-#_97e28017397dcbb7f1d1f828b58021c2p2@Cnpy1
6.64e-38FFCP PHASE2:Mm9::chr5:28536607..28536622,-#_97e28017397dcbb7f1d1f828b58021c2p2@Cnpy1
6.64e-38FFCP PHASE2:Mm9::chr10:28864024..28864035,+#_97e28017397dcbb7f1d1f828b58021c2p8@6330407J23Rik
6.64e-38FFCP PHASE1:Mm9::chr10:28864024..28864035,+#_97e28017397dcbb7f1d1f828b58021c2p8@6330407J23Rik
1.58e-37FFCP PHASE1:Mm9::chr19:36992738..36992777,-#_f064d35c466b0f71d8dabe235850878cp@chr19:36992738..36992777, -
1.58e-37FFCP PHASE2:Mm9::chr19:36992738..36992777,-#_f064d35c466b0f71d8dabe235850878cp@chr19:36992738..36992777, -
2.1e-37FFCP PHASE2:Mm9::chr1:79759005..79759018,-#_2142cbe4f1e729ff2af3f4814172ea6ap7@Wdfy1
2.1e-37FFCP PHASE1:Mm9::chr1:79759005..79759018,-#_2142cbe4f1e729ff2af3f4814172ea6ap7@Wdfy1
3.72e-37FFCP PHASE2:Mm9::chr12:28021078..28021088,+#_0ebc6e5c4940a74a4e906d5ee61d6545p@chr12:28021078..28021088, +
3.72e-37FFCP PHASE1:Mm9::chr12:28021078..28021088,+#_0ebc6e5c4940a74a4e906d5ee61d6545p@chr12:28021078..28021088, +
1.02e-33FFCP PHASE1:Mm9::chr1:19094212..19094219,+#_b3794dc712ce7e122215b6d681f19279p@chr1:19094212..19094219, +
1.02e-33FFCP PHASE2:Mm9::chr1:19094212..19094219,+#_b3794dc712ce7e122215b6d681f19279p@chr1:19094212..19094219, +
2.8e-33FFCP PHASE2:Mm9::chr5:28536444..28536454,-#_e57c64e7533e57b75de0927c759a3f58p5@Cnpy1
2.8e-33FFCP PHASE1:Mm9::chr5:28536444..28536454,-#_e57c64e7533e57b75de0927c759a3f58p5@Cnpy1
5.97e-33FFCP PHASE2:Mm9::chr17:80706736..80706753,+#_7df7b3da012ebf5c1f85636c1856f647p1@Arhgef33
5.97e-33FFCP PHASE1:Mm9::chr17:80706736..80706753,+#_7df7b3da012ebf5c1f85636c1856f647p1@Arhgef33
9.86e-33FFCP PHASE2:Mm9::chr9:91273412..91273420,+#_1c125d67560854c62c915ba3ba62f673p7@Zic4
9.86e-33FFCP PHASE1:Mm9::chr9:91273412..91273420,+#_1c125d67560854c62c915ba3ba62f673p7@Zic4
1.16e-30FFCP PHASE1:Mm9::chr3:17226363..17226378,-#_cb65257d8ef3c0e7479cf24725b8177fp@chr3:17226363..17226378, -
1.16e-30FFCP PHASE2:Mm9::chr3:17226363..17226378,-#_cb65257d8ef3c0e7479cf24725b8177fp@chr3:17226363..17226378, -
1.46e-30FFCP PHASE2:Mm9::chr1:19093112..19093124,+#_2dad7723c4d7d7e5cb20789fa39c7b57p1@Tfap2d
1.46e-30FFCP PHASE1:Mm9::chr1:19093112..19093124,+#_2dad7723c4d7d7e5cb20789fa39c7b57p1@Tfap2d
3.62e-30FFCP PHASE1:Mm9::chr19:47098327..47098338,+#_ff2fa627009fe8e539c133b23d2e4e04p@chr19:47098327..47098338, +
3.62e-30FFCP PHASE2:Mm9::chr19:47098327..47098338,+#_ff2fa627009fe8e539c133b23d2e4e04p@chr19:47098327..47098338, +
4.54e-30FFCP PHASE1:Mm9::chr1:140745165..140745180,-#_2892fcd001adf669e8b190a8b2b5a042p6@Lhx9
4.54e-30FFCP PHASE2:Mm9::chr1:140745165..140745180,-#_2892fcd001adf669e8b190a8b2b5a042p6@Lhx9
5.64e-30FFCP PHASE2:Mm9::chr10:80924310..80924312,+#_7feac7927f85084cd0dfdf8ba758d3dap1@ENSMUST00000156926
5.64e-30FFCP PHASE1:Mm9::chr10:80924310..80924312,+#_7feac7927f85084cd0dfdf8ba758d3dap1@ENSMUST00000156926
1.54e-29FFCP PHASE2:Mm9::chr15:99468218..99468227,-#_0c6ef69de65db6bb8394cbf8fb230267p4@Racgap1
1.54e-29FFCP PHASE1:Mm9::chr15:99468218..99468227,-#_0c6ef69de65db6bb8394cbf8fb230267p4@Racgap1
2.19e-29FFCP PHASE2:Mm9::chr19:55969096..55969105,+#_bc0f664e106956d65a0bb115d5ea16ddp52@Tcf7l2
2.19e-29FFCP PHASE1:Mm9::chr19:55969096..55969105,+#_bc0f664e106956d65a0bb115d5ea16ddp52@Tcf7l2
3.42e-29FFCP PHASE2:Mm9::chr19:55968827..55968868,+#_0a2d34827d7f4e870e4812ea94bb550ap29@Tcf7l2
3.42e-29FFCP PHASE1:Mm9::chr12:28020918..28020929,-#_0a2d34827d7f4e870e4812ea94bb550ap@chr12:28020918..28020929, -
3.42e-29FFCP PHASE1:Mm9::chr19:55968827..55968868,+#_0a2d34827d7f4e870e4812ea94bb550ap29@Tcf7l2
3.42e-29FFCP PHASE2:Mm9::chr12:28020918..28020929,-#_0a2d34827d7f4e870e4812ea94bb550ap@chr12:28020918..28020929, -
7.38e-28FFCP PHASE2:Mm9::chr17:37182755..37182764,+#_995860e4ca4191b532835d9f1abe4fcep18@Gabbr1
7.38e-28FFCP PHASE2:Mm9::chr4:139389439..139389450,-#_995860e4ca4191b532835d9f1abe4fcep3@Pax7
7.38e-28FFCP PHASE1:Mm9::chr17:37182755..37182764,+#_995860e4ca4191b532835d9f1abe4fcep18@Gabbr1
7.38e-28FFCP PHASE1:Mm9::chr4:139389439..139389450,-#_995860e4ca4191b532835d9f1abe4fcep3@Pax7
1.68e-27FFCP PHASE1:Mm9::chr4:45839835..45839846,-#_e0e8bafb9c48d32188c0fc103cef7148p6@Igfbpl1
1.68e-27FFCP PHASE2:Mm9::chr4:45839835..45839846,-#_e0e8bafb9c48d32188c0fc103cef7148p6@Igfbpl1
2.06e-27FFCP PHASE1:Mm9::chr7:144388046..144388053,-#_df128e725f5296cba1f730891fcd397ap@chr7:144388046..144388053, -
2.06e-27FFCP PHASE2:Mm9::chr7:144388046..144388053,-#_df128e725f5296cba1f730891fcd397ap@chr7:144388046..144388053, -
2.53e-27FFCP PHASE1:Mm9::chr1:42752036..42752049,-#_45ef735e8bb34d89477fad32722663bap7@2610017I09Rik
2.53e-27FFCP PHASE2:Mm9::chr1:42752036..42752049,-#_45ef735e8bb34d89477fad32722663bap7@2610017I09Rik
3.8e-27FFCP PHASE1:Mm9::chr1:140744193..140744208,-#_98df080accdf8febf21ee58d3fbcf800p4@Lhx9
3.8e-27FFCP PHASE2:Mm9::chr1:140744193..140744208,-#_98df080accdf8febf21ee58d3fbcf800p4@Lhx9
4.66e-27FFCP PHASE2:Mm9::chr9:111254413..111254426,+#_6c66549030043d88d38a3056e0968b61p@chr9:111254413..111254426, +
4.66e-27FFCP PHASE1:Mm9::chr9:111254413..111254426,+#_6c66549030043d88d38a3056e0968b61p@chr9:111254413..111254426, +
4.66e-27FFCP PHASE2:Mm9::chr4:107353563..107353590,-#_6c66549030043d88d38a3056e0968b61p6@Dmrtb1
4.66e-27FFCP PHASE1:Mm9::chr4:107353563..107353590,-#_6c66549030043d88d38a3056e0968b61p6@Dmrtb1
5.7e-27FFCP PHASE1:Mm9::chr2:158436393..158436401,-#_e17d813d047e5e5e8c1368863acfe579p2@ENSMUST00000145773
5.7e-27FFCP PHASE2:Mm9::chr2:158436393..158436401,-#_e17d813d047e5e5e8c1368863acfe579p2@ENSMUST00000145773
1.57e-26FFCP PHASE2:Mm9::chr16:72563629..72563640,+#_4d67dffa2218ef25af2886cb2c49a85fp@chr16:72563629..72563640, +
1.57e-26FFCP PHASE1:Mm9::chr10:80488930..80488949,-#_4d67dffa2218ef25af2886cb2c49a85fp@chr10:80488930..80488949, -
1.57e-26FFCP PHASE1:Mm9::chr8:108128922..108128940,+#_4d67dffa2218ef25af2886cb2c49a85fp3@Fam65a
1.57e-26FFCP PHASE2:Mm9::chr8:108128922..108128940,+#_4d67dffa2218ef25af2886cb2c49a85fp3@Fam65a
1.57e-26FFCP PHASE2:Mm9::chr10:80488930..80488949,-#_4d67dffa2218ef25af2886cb2c49a85fp@chr10:80488930..80488949, -
1.57e-26FFCP PHASE1:Mm9::chr16:72563629..72563640,+#_4d67dffa2218ef25af2886cb2c49a85fp@chr16:72563629..72563640, +
1.91e-26FFCP PHASE2:Mm9::chr17:33766278..33766289,+#_1ab84265d8d39d32e80ef8f48bfa575ep11@Zfp414
1.91e-26FFCP PHASE1:Mm9::chr17:33766278..33766289,+#_1ab84265d8d39d32e80ef8f48bfa575ep11@Zfp414
2.86e-26FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_542d2c6381741fe9bedc63662e5af1b8p@chr2:70399563..70399583, +
2.86e-26FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_542d2c6381741fe9bedc63662e5af1b8p@chr2:70399563..70399583, +
3.49e-26FFCP PHASE2:Mm9::chr4:107353455..107353476,-#_b4f6d913374a53180f3cef38d1a25e7fp8@Dmrtb1
3.49e-26FFCP PHASE1:Mm9::chr4:107353455..107353476,-#_b4f6d913374a53180f3cef38d1a25e7fp8@Dmrtb1
4.47e-25FFCP PHASE1:Mm9::chr5:106887428..106887437,-#_0445346668fa7213499f2892f8819082p4@Barhl2
4.47e-25FFCP PHASE2:Mm9::chr5:106887428..106887437,-#_0445346668fa7213499f2892f8819082p4@Barhl2
6.49e-25FFCP PHASE1:Mm9::chr9:69608856..69608874,+#_06ab08c412babc7acbf66b43d9087bb8p1@B230323A14Rik
6.49e-25FFCP PHASE1:Mm9::chr19:55968998..55969011,+#_06ab08c412babc7acbf66b43d9087bb8p39@Tcf7l2
6.49e-25FFCP PHASE2:Mm9::chr9:69608856..69608874,+#_06ab08c412babc7acbf66b43d9087bb8p1@B230323A14Rik
6.49e-25FFCP PHASE2:Mm9::chr19:55968998..55969011,+#_06ab08c412babc7acbf66b43d9087bb8p39@Tcf7l2
7.81e-25FFCP PHASE2:Mm9::chr4:107353480..107353492,-#_d7b0910b5efba033177b4e0a069a40b9p9@Dmrtb1
7.81e-25FFCP PHASE1:Mm9::chr4:107353480..107353492,-#_d7b0910b5efba033177b4e0a069a40b9p9@Dmrtb1
1.36e-24FFCP PHASE2:Mm9::chr7:67361722..67361744,-#_15f096b1c05adfb06f710d882131f4b2p@chr7:67361722..67361744, -
1.36e-24FFCP PHASE1:Mm9::chr7:67361722..67361744,-#_15f096b1c05adfb06f710d882131f4b2p@chr7:67361722..67361744, -
1.63e-24FFCP PHASE1:Mm9::chr19:55993992..55994008,+#_f88290ceb2ad6d4a8edde8d93c5bbdbcp@chr19:55993992..55994008, +
1.63e-24FFCP PHASE2:Mm9::chr19:55993992..55994008,+#_f88290ceb2ad6d4a8edde8d93c5bbdbcp@chr19:55993992..55994008, +
1.74e-24FFCP PHASE1:Mm9::chr5:28536710..28536719,-#_cc2aa4cd4943ab41071e7a8db9a93832p11@Cnpy1
1.74e-24FFCP PHASE2:Mm9::chr5:28536710..28536719,-#_cc2aa4cd4943ab41071e7a8db9a93832p11@Cnpy1
1.96e-24FFCP PHASE2:Mm9::chr13:29042477..29042484,-#_5b4c5f399e8bbf1e540d72e2a5cdc16bp@chr13:29042477..29042484, -
1.96e-24FFCP PHASE1:Mm9::chr13:29042477..29042484,-#_5b4c5f399e8bbf1e540d72e2a5cdc16bp@chr13:29042477..29042484, -
2.36e-24FFCP PHASE2:Mm9::chr5:37670900..37670910,+#_04ad5d0e54e446ed0518de126efec149p@chr5:37670900..37670910, +
2.36e-24FFCP PHASE1:Mm9::chr5:37670900..37670910,+#_04ad5d0e54e446ed0518de126efec149p@chr5:37670900..37670910, +

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