CL:0000126: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together." [GOC:tfm, ISBN:0721662544] | ||
|derives_from= | |derives_from= | ||
|develops_from=CL:0000339 | |develops_from=CL:0000339 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000126 | |||
|is_a=CL:0000243 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=macroglial cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym="macrogliocyte" EXACT [] | ||
|union_of= | |||
|xref=BTO:0000771;;FMA:54538 | |||
}} | }} | ||
Latest revision as of 16:30, 12 September 2014
| Name: | macroglial cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together." [GOC:tfm, ISBN:0721662544] | ||
| Xrefs: |
| ||
| Synonyms: | "macrogliocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000243(glial cell (sensu Vertebrata)) |
|---|---|
| develops_from: | CL:0000339(glioblast (sensu Vertebrata)) |
Children
| is a: | CL:0000127 (astrocyte),CL:0000128 (oligodendrocyte),CL:2000005 (brain macroglial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10425-106D2 (astrocytoma cell line:TM-31)
- 10753-110D6
- 10762-110E6
- 10763-110E7
- 11235-116D2 (Astrocyte - cerebral cortex, donor1)
- 11316-117D2 (Astrocyte - cerebral cortex, donor2)
- 11392-118C6 (Astrocyte - cerebral cortex, donor3)
- 11496-119F2 (Oligodendrocyte - precursors, donor1)
- 11500-119F6 (Astrocyte - cerebellum, donor1)
- 11550-120C2 (Mouse Astrocytes - cerebellar, donor2)
... further results Mouse (Mus musculus)
- 10425-106D2 (astrocytoma cell line:TM-31)
- 10753-110D6
- 10762-110E6
- 10763-110E7
- 11235-116D2 (Astrocyte - cerebral cortex, donor1)
- 11316-117D2 (Astrocyte - cerebral cortex, donor2)
- 11392-118C6 (Astrocyte - cerebral cortex, donor3)
- 11496-119F2 (Oligodendrocyte - precursors, donor1)
- 11500-119F6 (Astrocyte - cerebellum, donor1)
- 11550-120C2 (Mouse Astrocytes - cerebellar, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000126 (macroglial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.94e-140 | FFCP PHASE1:Hg19::chr4:169553987..169553999,+#_6300da8da1a93d0e7f817c67e310ff2b | p@chr4:169553987..169553999, + |
| 6.94e-140 | FFCP PHASE2:Hg19::chr4:169553987..169553999,+#_6300da8da1a93d0e7f817c67e310ff2b | p@chr4:169553987..169553999, + |
| 1.28e-84 | FFCP PHASE1:Hg19::chr9:122602283..122602290,-#_1b1718ed5bea392b556a41ee4b03192a | p@chr9:122602283..122602290, - |
| 1.28e-84 | FFCP PHASE2:Hg19::chr9:122602283..122602290,-#_1b1718ed5bea392b556a41ee4b03192a | p@chr9:122602283..122602290, - |
| 6.32e-78 | FFCP PHASE1:Hg19::chr2:48919725..48919761,+#_570d2e6fe5bce6c13fa0324df1c308ba | p@chr2:48919725..48919761, + |
| 6.32e-78 | FFCP PHASE2:Hg19::chr2:48919725..48919761,+#_570d2e6fe5bce6c13fa0324df1c308ba | p@chr2:48919725..48919761, + |
| 8.34e-78 | FFCP PHASE1:Hg19::chr2:48919688..48919703,+#_8b1f711985bff341109a9117c040929a | p@chr2:48919688..48919703, + |
| 8.34e-78 | FFCP PHASE2:Hg19::chr2:48919688..48919703,+#_8b1f711985bff341109a9117c040929a | p@chr2:48919688..48919703, + |
| 1.79e-75 | FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_51aca3c035a9d2320801f33c27c99290 | p1@ENST00000437461 |
| 1.79e-75 | FFCP PHASE2:Hg19::chr11:68808268..68808276,-#_51aca3c035a9d2320801f33c27c99290 | p@chr11:68808268..68808276, - |
| 1.79e-75 | FFCP PHASE1:Hg19::chr11:68808268..68808276,-#_51aca3c035a9d2320801f33c27c99290 | p@chr11:68808268..68808276, - |
| 1.79e-75 | FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_51aca3c035a9d2320801f33c27c99290 | p1@ENST00000437461 |
| 2.17e-75 | FFCP PHASE1:Hg19::chr13:99349888..99349893,+#_c9c670b5b5ba3e286199956ec8298b2e | p@chr13:99349888..99349893, + |
| 2.17e-75 | FFCP PHASE2:Hg19::chr13:99349888..99349893,+#_c9c670b5b5ba3e286199956ec8298b2e | p@chr13:99349888..99349893, + |
| 2.83e-68 | FFCP PHASE1:Hg19::chr22:30176932..30176938,+#_4431d4034ea006c94587dcaa0d5a5ad9 | p@chr22:30176932..30176938, + |
| 2.83e-68 | FFCP PHASE2:Hg19::chr22:30176932..30176938,+#_4431d4034ea006c94587dcaa0d5a5ad9 | p@chr22:30176932..30176938, + |
| 2.25e-65 | FFCP PHASE2:Mm9::chr8:96704054..96704065,-#_2579e0133d5e6e536c36a0a951ce318a | p@chr8:96704054..96704065, - |
| 2.25e-65 | FFCP PHASE1:Mm9::chr8:96704054..96704065,-#_2579e0133d5e6e536c36a0a951ce318a | p@chr8:96704054..96704065, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr1:72895689..72895698,-#_3074a409b5a7bdc3a21b7987d7c26042 | p@chr1:72895689..72895698, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr14:70592673..70592699,-#_3074a409b5a7bdc3a21b7987d7c26042 | p@chr14:70592673..70592699, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr14:70592673..70592699,-#_3074a409b5a7bdc3a21b7987d7c26042 | p@chr14:70592673..70592699, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr1:72895689..72895698,-#_3074a409b5a7bdc3a21b7987d7c26042 | p@chr1:72895689..72895698, - |
| 2.34e-60 | FFCP PHASE1:Mm9::chr1:72898728..72898736,+#_35ceeb513fd93e04c70b53ced516170d | p@chr1:72898728..72898736, + |
| 2.34e-60 | FFCP PHASE2:Mm9::chr1:72898728..72898736,+#_35ceeb513fd93e04c70b53ced516170d | p@chr1:72898728..72898736, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr6:92777773..92777784,+#_052d189224e4f67f54a109695684017b | p4@ENSMUST00000133858 |
| 3.91e-58 | FFCP PHASE1:Mm9::chr9:43915826..43915844,+#_052d189224e4f67f54a109695684017b | p@chr9:43915826..43915844, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr7:29152679..29152684,-#_052d189224e4f67f54a109695684017b | p@chr7:29152679..29152684, - |
| 3.91e-58 | FFCP PHASE2:Mm9::chr7:29152679..29152684,-#_052d189224e4f67f54a109695684017b | p@chr7:29152679..29152684, - |
| 3.91e-58 | FFCP PHASE2:Mm9::chr9:43915826..43915844,+#_052d189224e4f67f54a109695684017b | p@chr9:43915826..43915844, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chr6:92777773..92777784,+#_052d189224e4f67f54a109695684017b | p4@ENSMUST00000133858 |
| 4.76e-57 | FFCP PHASE2:Hg19::chr8:32488262..32488265,+#_32adb6b36d54c4678122bd6c13f75087 | p@chr8:32488262..32488265, + |
| 4.76e-57 | FFCP PHASE1:Hg19::chr8:32488262..32488265,+#_32adb6b36d54c4678122bd6c13f75087 | p@chr8:32488262..32488265, + |
| 8.4e-54 | FFCP PHASE1:Hg19::chr6:45296191..45296203,+#_3bb7c7d5a6f4eb57022976d0b76b73fe | p13@RUNX2 |
| 8.4e-54 | FFCP PHASE2:Hg19::chr6:45296191..45296203,+#_3bb7c7d5a6f4eb57022976d0b76b73fe | p13@RUNX2 |
| 2.53e-52 | FFCP PHASE1:Mm9::chr19:17030554..17030565,+#_ff410747d20dddd17654f1d5c028e27d | p5@Prune2 |
| 2.53e-52 | FFCP PHASE2:Mm9::chr19:17030554..17030565,+#_ff410747d20dddd17654f1d5c028e27d | p5@Prune2 |
| 3.23e-52 | FFCP PHASE2:Mm9::chr14:70592626..70592638,-#_159c3cf932ab2c591b84890397722f34 | p@chr14:70592626..70592638, - |
| 3.23e-52 | FFCP PHASE1:Mm9::chr14:70592626..70592638,-#_159c3cf932ab2c591b84890397722f34 | p@chr14:70592626..70592638, - |
| 4.11e-52 | FFCP PHASE2:Mm9::chr1:72873192..72873206,+#_4c0469572ca501433e93f7055e368afe | p@chr1:72873192..72873206, + |
| 4.11e-52 | FFCP PHASE1:Mm9::chr1:72873192..72873206,+#_4c0469572ca501433e93f7055e368afe | p@chr1:72873192..72873206, + |
| 4.11e-52 | FFCP PHASE2:Mm9::chr8:28132545..28132551,+#_4c0469572ca501433e93f7055e368afe | p@chr8:28132545..28132551, + |
| 4.11e-52 | FFCP PHASE1:Mm9::chr8:28132545..28132551,+#_4c0469572ca501433e93f7055e368afe | p@chr8:28132545..28132551, + |
| 5.23e-52 | FFCP PHASE1:Mm9::chr1:72898789..72898796,+#_e1be26baf272796b0b2e8935b0faf0d8 | p@chr1:72898789..72898796, + |
| 5.23e-52 | FFCP PHASE2:Mm9::chr1:72898789..72898796,+#_e1be26baf272796b0b2e8935b0faf0d8 | p@chr1:72898789..72898796, + |
| 5.23e-52 | FFCP PHASE1:Mm9::chr9:37174919..37174932,+#_e1be26baf272796b0b2e8935b0faf0d8 | p3@Hepacam |
| 5.23e-52 | FFCP PHASE2:Mm9::chr9:37174919..37174932,+#_e1be26baf272796b0b2e8935b0faf0d8 | p3@Hepacam |
| 2.3e-51 | FFCP PHASE1:Hg19::chr7:42192092..42192108,-#_522b77efa5fc3c3218435536aa218a43 | p13@GLI3 |
| 2.3e-51 | FFCP PHASE2:Hg19::chr7:42192092..42192108,-#_522b77efa5fc3c3218435536aa218a43 | p13@GLI3 |
| 3.85e-51 | FFCP PHASE1:Hg19::chr20:35856764..35856768,+#_db23cf835e5ba8347a4cc0f76d53f0cb | p25@RPN2 |
| 3.85e-51 | FFCP PHASE2:Hg19::chr20:35856764..35856768,+#_db23cf835e5ba8347a4cc0f76d53f0cb | p25@RPN2 |
| 5.43e-51 | FFCP PHASE1:Hg19::chr14:33403217..33403226,+#_41841675969cc9a547f4f5b93ff5e0cf | p@chr14:33403217..33403226, + |
| 5.43e-51 | FFCP PHASE2:Hg19::chr14:33403217..33403226,+#_41841675969cc9a547f4f5b93ff5e0cf | p@chr14:33403217..33403226, + |
| 6.95e-51 | FFCP PHASE1:Hg19::chr4:169553961..169553972,+#_2bda9a1b00cf61e20584897400dc56a9 | p@chr4:169553961..169553972, + |
| 6.95e-51 | FFCP PHASE2:Hg19::chr4:169553961..169553972,+#_2bda9a1b00cf61e20584897400dc56a9 | p@chr4:169553961..169553972, + |
| 7.9e-51 | FFCP PHASE1:Hg19::chr1:98642833..98642844,+#_a981f66dea8b9be4e810785c87b41578 | p@chr1:98642833..98642844, + |
| 7.9e-51 | FFCP PHASE2:Hg19::chr1:98642833..98642844,+#_a981f66dea8b9be4e810785c87b41578 | p@chr1:98642833..98642844, + |
| 8.98e-51 | FFCP PHASE1:Hg19::chr1:98518907..98518920,+#_f5dbf957567d9aa00a31e553b77cf6b5 | p@chr1:98518907..98518920, + |
| 8.98e-51 | FFCP PHASE2:Hg19::chr1:98518907..98518920,+#_f5dbf957567d9aa00a31e553b77cf6b5 | p@chr1:98518907..98518920, + |
| 4.49e-48 | FFCP PHASE1:Mm9::chr1:72895732..72895747,-#_d0857f43426660779c0153620213604a | p@chr1:72895732..72895747, - |
| 4.49e-48 | FFCP PHASE2:Mm9::chr1:72895732..72895747,-#_d0857f43426660779c0153620213604a | p@chr1:72895732..72895747, - |
| 1.09e-46 | FFCP PHASE1:Mm9::chr1:72895881..72895885,-#_8d745f975a795f02717eda3d8e0b1377 | p@chr1:72895881..72895885, - |
| 1.09e-46 | FFCP PHASE2:Mm9::chr1:72895881..72895885,-#_8d745f975a795f02717eda3d8e0b1377 | p@chr1:72895881..72895885, - |
| 1.09e-46 | FFCP PHASE2:Mm9::chr8:73022520..73022524,+#_8d745f975a795f02717eda3d8e0b1377 | p@chr8:73022520..73022524, + |
| 1.09e-46 | FFCP PHASE1:Mm9::chr8:73022520..73022524,+#_8d745f975a795f02717eda3d8e0b1377 | p@chr8:73022520..73022524, + |
| 1.12e-46 | FFCP PHASE1:Hg19::chr4:77356957..77356973,+#_6ae5d9683e581b2d9c2b2967f47b6901 | p20@SHROOM3 |
| 1.12e-46 | FFCP PHASE2:Hg19::chr4:77356957..77356973,+#_6ae5d9683e581b2d9c2b2967f47b6901 | p20@SHROOM3 |
| 1.42e-46 | FFCP PHASE1:Mm9::chr19:40457627..40457636,-#_25af45ddda7ed5390d048b431425b387 | p9@Sorbs1 |
| 1.42e-46 | FFCP PHASE2:Mm9::chr19:40457627..40457636,-#_25af45ddda7ed5390d048b431425b387 | p9@Sorbs1 |
| 1.86e-46 | FFCP PHASE1:Mm9::chr3:88990698..88990709,+#_16af32e3e7f5380db9c8e36a968e084c | p@chr3:88990698..88990709, + |
| 1.86e-46 | FFCP PHASE2:Mm9::chr3:88990698..88990709,+#_16af32e3e7f5380db9c8e36a968e084c | p@chr3:88990698..88990709, + |
| 4.13e-46 | FFCP PHASE1:Mm9::chr19:8788690..8788697,-#_13835a953a5d9a5a7e79ebe3c8e9ea72 | p17@Slc3a2 |
| 4.13e-46 | FFCP PHASE2:Mm9::chr19:8788690..8788697,-#_13835a953a5d9a5a7e79ebe3c8e9ea72 | p17@Slc3a2 |
| 4.13e-46 | FFCP PHASE1:Mm9::chr19:8788816..8788826,-#_13835a953a5d9a5a7e79ebe3c8e9ea72 | p14@Slc3a2 |
| 4.13e-46 | FFCP PHASE2:Mm9::chr19:8788816..8788826,-#_13835a953a5d9a5a7e79ebe3c8e9ea72 | p14@Slc3a2 |
| 4.13e-46 | FFCP PHASE1:Mm9::chr11:7114172..7114182,-#_13835a953a5d9a5a7e79ebe3c8e9ea72 | p4@Igfbp3 |
| 4.13e-46 | FFCP PHASE2:Mm9::chr11:7114172..7114182,-#_13835a953a5d9a5a7e79ebe3c8e9ea72 | p4@Igfbp3 |
| 7.81e-46 | FFCP PHASE1:Mm9::chr11:7110185..7110197,-#_ca8793154a584be7e93296707de7f2d8 | p@chr11:7110185..7110197, - |
| 7.81e-46 | FFCP PHASE2:Mm9::chr11:7110185..7110197,-#_ca8793154a584be7e93296707de7f2d8 | p@chr11:7110185..7110197, - |
| 1.19e-45 | FFCP PHASE2:Mm9::chr8:11006242..11006246,-#_d4f1fad8fea7ce8bea77df70b167da00 | p@chr8:11006242..11006246, - |
| 1.19e-45 | FFCP PHASE1:Mm9::chr8:11006242..11006246,-#_d4f1fad8fea7ce8bea77df70b167da00 | p@chr8:11006242..11006246, - |
| 1.77e-45 | FFCP PHASE1:Hg19::chr5:135540733..135540788,-#_21e1c4780f00538afdcb94fdee86d532 | p@chr5:135540733..135540788, - |
| 1.77e-45 | FFCP PHASE2:Hg19::chr5:135540733..135540788,-#_21e1c4780f00538afdcb94fdee86d532 | p@chr5:135540733..135540788, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chr6:84135739..84135768,+#_2ef7baf119905b42e632b754aa4f8abd | p@chr6:84135739..84135768, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr1:154940591..154940634,+#_2ef7baf119905b42e632b754aa4f8abd | p@chr1:154940591..154940634, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr11:66340488..66340520,-#_2ef7baf119905b42e632b754aa4f8abd | p@chr11:66340488..66340520, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chr12:86222392..86222395,-#_2ef7baf119905b42e632b754aa4f8abd | p@chr12:86222392..86222395, - |
| 5.38e-44 | FFCP PHASE2:Mm9::chr11:66340488..66340520,-#_2ef7baf119905b42e632b754aa4f8abd | p@chr11:66340488..66340520, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chr11:45940767..45940771,+#_2ef7baf119905b42e632b754aa4f8abd | p@chr11:45940767..45940771, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr14:70592586..70592593,-#_2ef7baf119905b42e632b754aa4f8abd | p@chr14:70592586..70592593, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chr14:70592586..70592593,-#_2ef7baf119905b42e632b754aa4f8abd | p@chr14:70592586..70592593, - |
| 5.38e-44 | FFCP PHASE2:Mm9::chr12:86222392..86222395,-#_2ef7baf119905b42e632b754aa4f8abd | p@chr12:86222392..86222395, - |
| 5.38e-44 | FFCP PHASE2:Mm9::chr11:45940767..45940771,+#_2ef7baf119905b42e632b754aa4f8abd | p@chr11:45940767..45940771, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr1:154940591..154940634,+#_2ef7baf119905b42e632b754aa4f8abd | p@chr1:154940591..154940634, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr6:84135739..84135768,+#_2ef7baf119905b42e632b754aa4f8abd | p@chr6:84135739..84135768, + |
| 5.58e-44 | FFCP PHASE1:Mm9::chr1:72896186..72896195,+#_64360c815241fe7ae5800e9e72877fbf | p@chr1:72896186..72896195, + |
| 5.58e-44 | FFCP PHASE2:Mm9::chr1:72896186..72896195,+#_64360c815241fe7ae5800e9e72877fbf | p@chr1:72896186..72896195, + |
| 5.22e-43 | FFCP PHASE1:Hg19::chr12:41374792..41374806,+#_d3fa7e32e93554467378c6a8659cd3fe | p@chr12:41374792..41374806, + |
| 5.22e-43 | FFCP PHASE2:Hg19::chr12:41374792..41374806,+#_d3fa7e32e93554467378c6a8659cd3fe | p@chr12:41374792..41374806, + |
| 6.96e-43 | FFCP PHASE1:Hg19::chr2:104096987..104096993,-#_2b87ffa26700691c00ce0c3aff5e409d | p@chr2:104096987..104096993, - |
| 6.96e-43 | FFCP PHASE2:Hg19::chr2:104096987..104096993,-#_2b87ffa26700691c00ce0c3aff5e409d | p@chr2:104096987..104096993, - |
