CL:0000202: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 12: | Line 12: | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=auditory | |name=auditory hair cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002227 | |part_of=UBERON:0002227 | ||
Latest revision as of 16:31, 12 September 2014
| Name: | auditory hair cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [MESH:A.08.663.650.250] | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory receptor cell" EXACT [] "cochlear hair cell" EXACT [] "inner ear hair cell" EXACT [GO:0060119] "inner ear receptor cell" EXACT [GO:0060119] | ||
| Comments: | In mammals these cells are located in the organ of Corti. | ||
| Alt_id: | CL:0000201 |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000006(neuronal receptor cell),CL:0002374(ear hair cell),CL:0002491(auditory epithelial cell) |
|---|---|
| part_of: | UBERON:0002227(spiral organ of cochlea) |
Children
| is a: | CL:0000589 (cochlear inner hair cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Mouse (Mus musculus)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000202 (auditory hair cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:83129695..83129696,+#_11fa8e49030c043265c7b5924e6ceeae | p24@Dctn1 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:18246142..18246145,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr10:18246142..18246145, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:92087990..92087995,+#_11fa8e49030c043265c7b5924e6ceeae | p3@Plscr5 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:114652018..114652020,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr11:114652018..114652020, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:36966723..36966734,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr6:36966723..36966734, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:92087990..92087995,+#_11fa8e49030c043265c7b5924e6ceeae | p3@Plscr5 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34185389..34185401,+#_11fa8e49030c043265c7b5924e6ceeae | p8@Col11a2 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:97828021..97828028,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr15:97828021..97828028, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:94283075..94283082,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr8:94283075..94283082, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:94371110..94371111,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr11:94371110..94371111, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:127520184..127520191,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr3:127520184..127520191, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:12032746..12032751,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr2:12032746..12032751, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:83129695..83129696,+#_11fa8e49030c043265c7b5924e6ceeae | p24@Dctn1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:15466888..15466898,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr17:15466888..15466898, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:142907424..142907448,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr2:142907424..142907448, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:64684505..64684512,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr6:64684505..64684512, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34185362..34185370,+#_11fa8e49030c043265c7b5924e6ceeae | p10@Col11a2 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:114652018..114652020,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr11:114652018..114652020, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:180335744..180335746,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr2:180335744..180335746, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:15466888..15466898,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr17:15466888..15466898, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:72652671..72652676,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr5:72652671..72652676, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:36966993..36966996,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr6:36966993..36966996, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:127520184..127520191,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr3:127520184..127520191, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:36966723..36966734,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr6:36966723..36966734, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:87599703..87599714,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr9:87599703..87599714, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:64684505..64684512,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr6:64684505..64684512, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:94283075..94283082,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr8:94283075..94283082, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:87599703..87599714,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr9:87599703..87599714, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34185343..34185356,+#_11fa8e49030c043265c7b5924e6ceeae | p7@Col11a2 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34185378..34185383,+#_11fa8e49030c043265c7b5924e6ceeae | p11@Col11a2 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:91379135..91379143,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr15:91379135..91379143, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr19:10535924..10535927,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr19:10535924..10535927, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:142906965..142906982,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr2:142906965..142906982, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:94371110..94371111,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr11:94371110..94371111, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:53464193..53464197,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr2:53464193..53464197, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:53464193..53464197,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr2:53464193..53464197, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:36966993..36966996,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr6:36966993..36966996, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:66033513..66033517,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr18:66033513..66033517, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:106770202..106770208,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr4:106770202..106770208, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:64684637..64684654,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr6:64684637..64684654, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:64684637..64684654,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr6:64684637..64684654, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:12032746..12032751,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr2:12032746..12032751, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:66033513..66033517,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr18:66033513..66033517, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34185362..34185370,+#_11fa8e49030c043265c7b5924e6ceeae | p10@Col11a2 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34185389..34185401,+#_11fa8e49030c043265c7b5924e6ceeae | p8@Col11a2 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:142907424..142907448,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr2:142907424..142907448, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:91379135..91379143,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr15:91379135..91379143, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:55283394..55283400,-#_11fa8e49030c043265c7b5924e6ceeae | p1@Zpld1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:31171742..31171745,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr13:31171742..31171745, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:97828021..97828028,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr15:97828021..97828028, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:64684692..64684697,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr6:64684692..64684697, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:64684692..64684697,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr6:64684692..64684697, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:180335744..180335746,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr2:180335744..180335746, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:55283394..55283400,-#_11fa8e49030c043265c7b5924e6ceeae | p1@Zpld1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:18246142..18246145,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr10:18246142..18246145, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34185378..34185383,+#_11fa8e49030c043265c7b5924e6ceeae | p11@Col11a2 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:72652671..72652676,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr5:72652671..72652676, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:106770202..106770208,+#_11fa8e49030c043265c7b5924e6ceeae | p@chr4:106770202..106770208, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:10535924..10535927,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr19:10535924..10535927, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:142906965..142906982,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr2:142906965..142906982, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:31171742..31171745,-#_11fa8e49030c043265c7b5924e6ceeae | p@chr13:31171742..31171745, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34185343..34185356,+#_11fa8e49030c043265c7b5924e6ceeae | p7@Col11a2 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_4094126718b698ad3dd1a47764dbdd97 | p@chr14:63099970..63099980, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr5:28035962..28035983, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_4094126718b698ad3dd1a47764dbdd97 | p2@Tomt |
| 2.74e-44 | FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_4094126718b698ad3dd1a47764dbdd97 | p2@Gpr152 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr15:89215333..89215341, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr17:13983198..13983203, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr5:72652660..72652667, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_4094126718b698ad3dd1a47764dbdd97 | p@chr11:4689837..4689845, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr12:13508046..13508055, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr17:13983198..13983203, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_4094126718b698ad3dd1a47764dbdd97 | p@chr4:63079735..63079745, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_4094126718b698ad3dd1a47764dbdd97 | p@chr16:93971325..93971337, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_4094126718b698ad3dd1a47764dbdd97 | p1@Gm1322 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_4094126718b698ad3dd1a47764dbdd97 | p@chr6:86745686..86745727, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_4094126718b698ad3dd1a47764dbdd97 | p@chr13:37195838..37195870, - |
| 2.74e-44 | FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr3:154459246..154459253, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_4094126718b698ad3dd1a47764dbdd97 | p@chr9:56208792..56208814, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_4094126718b698ad3dd1a47764dbdd97 | p3@Fanca |
| 2.74e-44 | FFCP PHASE1:Mm9::chr13:31877112..31877122,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr13:31877112..31877122, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr2:53464168..53464175, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr1:93235253..93235264, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr5:3909290..3909299, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_4094126718b698ad3dd1a47764dbdd97 | p10@Sec11a |
| 2.74e-44 | FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr5:28035962..28035983, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_4094126718b698ad3dd1a47764dbdd97 | p@chr11:4689837..4689845, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_4094126718b698ad3dd1a47764dbdd97 | p7@Pkn3 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_4094126718b698ad3dd1a47764dbdd97 | p4@Kncn |
| 2.74e-44 | FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr3:100724698..100724706, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_4094126718b698ad3dd1a47764dbdd97 | p@chr2:170417150..170417155, - |
| 2.74e-44 | FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_4094126718b698ad3dd1a47764dbdd97 | p9@Otof |
| 2.74e-44 | FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_4094126718b698ad3dd1a47764dbdd97 | p4@Kncn |
| 2.74e-44 | FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr15:89215306..89215315, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr8:13414289..13414295, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr12:13508015..13508019, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_4094126718b698ad3dd1a47764dbdd97 | p1@Tmprss3 |
| 2.74e-44 | FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr2:53464168..53464175, + |
| 2.74e-44 | FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr3:154459184..154459195, + |
| 2.74e-44 | FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_4094126718b698ad3dd1a47764dbdd97 | p@chr6:113251614..113251623, + |
