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{{CL
{{CL
|id=CL:0000244
|alt_id=
|name=transitional epithelial cell
|namespace=cell
|def="A cell characteristically found lining hollow organs that are subject to great mechanical change due to contraction and distention; originally thought to represent a transition between stratified squamous and columnar epithelium." [GOC:tfm, ISBN:0721662544]
|xref=FMA:66778
|is_a=CL:0000066;;CL:0002371
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell characteristically found lining hollow organs that are subject to great mechanical change due to contraction and distention; originally thought to represent a transition between stratified squamous and columnar epithelium." [GOC:tfm, ISBN:0721662544]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000244
|is_a=CL:0000066 ;;CL:0002371
|is_obsolete=
|located_in=
|located_in=
|name=transitional epithelial cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:66778
}}
}}

Latest revision as of 16:32, 12 September 2014

Name:transitional epithelial cell
Namespace:FANTOM
Definition:"A cell characteristically found lining hollow organs that are subject to great mechanical change due to contraction and distention; originally thought to represent a transition between stratified squamous and columnar epithelium." [GOC:tfm, ISBN:0721662544]
Xrefs:
links:
FMA:66778


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000066(epithelial cell),CL:0002371(somatic cell)



Children


is a:CL:0000731 (urothelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000244 (transitional epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.31e-99FFCP PHASE2:Hg19::chr10:124050511..124050520,+#_609df7436b8a002567bcd82c1d0dd8acp9@BTBD16
8.31e-99FFCP PHASE1:Hg19::chr10:124050511..124050520,+#_609df7436b8a002567bcd82c1d0dd8acp9@BTBD16
7.02e-88FFCP PHASE2:Hg19::chr10:124050568..124050578,+#_858ba46728ddc331dec5260b5c26cff9p6@BTBD16
7.02e-88FFCP PHASE1:Hg19::chr10:124050568..124050578,+#_858ba46728ddc331dec5260b5c26cff9p6@BTBD16
6.32e-80FFCP PHASE2:Hg19::chr12:28125967..28125978,-#_4f426c9fe6e31229bf3e8aa6552f00f6p16@PTHLH
6.32e-80FFCP PHASE1:Hg19::chr12:28125967..28125978,-#_4f426c9fe6e31229bf3e8aa6552f00f6p16@PTHLH
1.16e-79FFCP PHASE1:Hg19::chr5:61213179..61213189,-#_17ea11fbfe64f63f2096ec2e5255238dp@chr5:61213179..61213189, -
1.16e-79FFCP PHASE2:Hg19::chr5:61213179..61213189,-#_17ea11fbfe64f63f2096ec2e5255238dp@chr5:61213179..61213189, -
3.32e-74FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_54baad3d7b9d3f71acc53700048ca117p@chrX:102977640..102977644, -
3.32e-74FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_54baad3d7b9d3f71acc53700048ca117p@chrX:102977640..102977644, -
4.26e-74FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_d73fef576312ea22cb8abfe474f583f2p4@IFNK
4.26e-74FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_d73fef576312ea22cb8abfe474f583f2p4@IFNK
2.23e-72FFCP PHASE1:Hg19::chr1:40492754..40492762,+#_de84605926027f731185b3a983c646f9p@chr1:40492754..40492762, +
2.23e-72FFCP PHASE2:Hg19::chr1:40492754..40492762,+#_de84605926027f731185b3a983c646f9p@chr1:40492754..40492762, +
2.68e-72FFCP PHASE2:Hg19::chr10:3954276..3954287,+#_43b63565bcb5a04831db711bffc17e50p@chr10:3954276..3954287, +
2.68e-72FFCP PHASE1:Hg19::chr10:3954276..3954287,+#_43b63565bcb5a04831db711bffc17e50p@chr10:3954276..3954287, +
3.47e-67FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_67860149cc6e8e2f28c2b68e98e6c3f9p17@PTHLH
3.47e-67FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_67860149cc6e8e2f28c2b68e98e6c3f9p17@PTHLH
2.4e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_ddc3a03b5cfeddffc85bf577251c52eep38@PTK2
2.4e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_ddc3a03b5cfeddffc85bf577251c52eep38@PTK2
2.61e-64FFCP PHASE1:Hg19::chr5:61213127..61213133,-#_28bd00aa61416a8e496ec86de6c7e9cfp@chr5:61213127..61213133, -
2.61e-64FFCP PHASE2:Hg19::chr5:61213127..61213133,-#_28bd00aa61416a8e496ec86de6c7e9cfp@chr5:61213127..61213133, -
7.67e-64FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_d265504237023e7769656a8642e1eeb3p@chr21:44168074..44168079, +
7.67e-64FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_d265504237023e7769656a8642e1eeb3p@chr21:44168074..44168079, +
1.18e-63FFCP PHASE1:Hg19::chr4:125341514..125341526,-#_a71386fc7633cfff69897874ce36c428p@chr4:125341514..125341526, -
1.18e-63FFCP PHASE2:Hg19::chr4:125341514..125341526,-#_a71386fc7633cfff69897874ce36c428p@chr4:125341514..125341526, -
1.67e-61FFCP PHASE2:Hg19::chr10:127763979..127763984,+#_6bc5a18aeb69fb0a88a22c13ba8072e4p@chr10:127763979..127763984, +
1.67e-61FFCP PHASE1:Hg19::chr10:127763979..127763984,+#_6bc5a18aeb69fb0a88a22c13ba8072e4p@chr10:127763979..127763984, +
1.06e-56FFCP PHASE2:Hg19::chr11:127965855..127965866,+#_160208c6c2c632d3ede4fad417cf82b5p@chr11:127965855..127965866, +
1.06e-56FFCP PHASE1:Hg19::chr11:127965855..127965866,+#_160208c6c2c632d3ede4fad417cf82b5p@chr11:127965855..127965866, +
1.64e-56FFCP PHASE2:Hg19::chr19:15065111..15065171,-#_f9658674d86f04adb687cba2211d03a3p@chr19:15065111..15065171, -
1.64e-56FFCP PHASE1:Hg19::chr19:15065111..15065171,-#_f9658674d86f04adb687cba2211d03a3p@chr19:15065111..15065171, -
4.09e-54FFCP PHASE2:Hg19::chr10:124050535..124050566,+#_57010f4383a912d08a65c47e27144c11p3@BTBD16
4.09e-54FFCP PHASE1:Hg19::chr10:124050535..124050566,+#_57010f4383a912d08a65c47e27144c11p3@BTBD16
1.81e-53FFCP PHASE2:Hg19::chr6:151358048..151358060,+#_50497459846ae12225c7c6c6413cd443p13@MTHFD1L
1.81e-53FFCP PHASE1:Hg19::chr6:151358048..151358060,+#_50497459846ae12225c7c6c6413cd443p13@MTHFD1L
7.95e-53FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_8105c6b559777fef179b6b755815b084p@chr7:2019948..2019961, -
7.95e-53FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_8105c6b559777fef179b6b755815b084p@chr7:2019948..2019961, -
1.07e-50FFCP PHASE1:Hg19::chr7:150813498..150813509,+#_94a4911fb33e1d880b83713ee034c449p30@AGAP3
1.07e-50FFCP PHASE2:Hg19::chr7:150813498..150813509,+#_94a4911fb33e1d880b83713ee034c449p30@AGAP3
1.21e-50FFCP PHASE2:Hg19::chr2:31560793..31560814,-#_2e158ba17e66105ce80d03266c6874e6p@chr2:31560793..31560814, -
1.21e-50FFCP PHASE1:Hg19::chr2:31560793..31560814,-#_2e158ba17e66105ce80d03266c6874e6p@chr2:31560793..31560814, -
2.23e-50FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_c711b08b9d0ba76dc8f7d872e3821874p@chr13:20934450..20934456, +
2.23e-50FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_c711b08b9d0ba76dc8f7d872e3821874p@chr13:20934450..20934456, +
5.14e-50FFCP PHASE1:Hg19::chr14:85935018..85935023,-#_ba406d4affbaa43bc7b8b63d0c5dc52ap@chr14:85935018..85935023, -
5.14e-50FFCP PHASE2:Hg19::chr14:85935018..85935023,-#_ba406d4affbaa43bc7b8b63d0c5dc52ap@chr14:85935018..85935023, -
6.6e-50FFCP PHASE1:Hg19::chr9:113802868..113802878,-#_0524b5f60ef3b2dbbd26048b2f386db0p@chr9:113802868..113802878, -
6.6e-50FFCP PHASE1:Hg19::chr9:21564382..21564387,-#_0524b5f60ef3b2dbbd26048b2f386db0p@chr9:21564382..21564387, -
6.6e-50FFCP PHASE2:Hg19::chr9:113802868..113802878,-#_0524b5f60ef3b2dbbd26048b2f386db0p@chr9:113802868..113802878, -
6.6e-50FFCP PHASE2:Hg19::chr9:21564382..21564387,-#_0524b5f60ef3b2dbbd26048b2f386db0p@chr9:21564382..21564387, -
8.47e-50FFCP PHASE2:Hg19::chr19:43965689..43965700,-#_50f652efae485eaaa16c5d288ec53463p@chr19:43965689..43965700, -
8.47e-50FFCP PHASE1:Hg19::chr19:43965689..43965700,-#_50f652efae485eaaa16c5d288ec53463p@chr19:43965689..43965700, -
1.41e-49FFCP PHASE1:Hg19::chr14:51956090..51956101,+#_13ebc93352b065d47e0afea4a55641c6p32@FRMD6
1.41e-49FFCP PHASE2:Hg19::chr14:51956090..51956101,+#_13ebc93352b065d47e0afea4a55641c6p32@FRMD6
5.41e-48FFCP PHASE2:Hg19::chr21:45020721..45020728,-#_c45ef719d13a042a598bc6894540d238p@chr21:45020721..45020728, -
5.41e-48FFCP PHASE1:Hg19::chr21:45020721..45020728,-#_c45ef719d13a042a598bc6894540d238p@chr21:45020721..45020728, -
8.73e-48FFCP PHASE1:Hg19::chr8:143814087..143814102,-#_395a6bbf04d5bcd264166da97f74012fp@chr8:143814087..143814102, -
8.73e-48FFCP PHASE2:Hg19::chr8:143814087..143814102,-#_395a6bbf04d5bcd264166da97f74012fp@chr8:143814087..143814102, -
2.66e-45FFCP PHASE1:Hg19::chr1:183192299..183192310,+#_b06aa7aec7c03905f95f5ee007eed696p@chr1:183192299..183192310, +
2.66e-45FFCP PHASE2:Hg19::chr1:183192299..183192310,+#_b06aa7aec7c03905f95f5ee007eed696p@chr1:183192299..183192310, +
3.1e-45FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_de53bc5598ae5ff62594deba1f9c1515p@chr2:20402306..20402318, -
3.1e-45FFCP PHASE2:Hg19::chr4:125341479..125341498,-#_de53bc5598ae5ff62594deba1f9c1515p@chr4:125341479..125341498, -
3.1e-45FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_de53bc5598ae5ff62594deba1f9c1515p@chr2:20402306..20402318, -
3.1e-45FFCP PHASE1:Hg19::chr4:125341479..125341498,-#_de53bc5598ae5ff62594deba1f9c1515p@chr4:125341479..125341498, -
4.87e-45FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_6f5f34b0b246b701308110dc85a4b2ecp1@IFNK
4.87e-45FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_6f5f34b0b246b701308110dc85a4b2ecp1@IFNK
5.66e-45FFCP PHASE2:Hg19::chr13:20805611..20805619,-#_047aed3c2ed4e9f4cdef0274562b7e0ep6@GJB6
5.66e-45FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_047aed3c2ed4e9f4cdef0274562b7e0ep@chr1:99387558..99387571, -
5.66e-45FFCP PHASE1:Hg19::chr13:20805611..20805619,-#_047aed3c2ed4e9f4cdef0274562b7e0ep6@GJB6
5.66e-45FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_047aed3c2ed4e9f4cdef0274562b7e0ep@chr1:99387558..99387571, -
1.56e-43FFCP PHASE1:Hg19::chr10:124050485..124050505,+#_467cdade7fc2592dec97deaf8512253bp2@BTBD16
1.56e-43FFCP PHASE2:Hg19::chr10:124050485..124050505,+#_467cdade7fc2592dec97deaf8512253bp2@BTBD16
1.27e-41FFCP PHASE2:Hg19::chr1:183212642..183212654,+#_f3f211c9f3b819eff2728becf7b50898p@chr1:183212642..183212654, +
1.27e-41FFCP PHASE1:Hg19::chr1:183212642..183212654,+#_f3f211c9f3b819eff2728becf7b50898p@chr1:183212642..183212654, +
2.53e-41FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_fad72b185a6222c7b81e115275e5c7fbp@chr6:44096519..44096530, -
2.53e-41FFCP PHASE2:Hg19::chr5:149877396..149877405,+#_fad72b185a6222c7b81e115275e5c7fbp19@NDST1
2.53e-41FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_fad72b185a6222c7b81e115275e5c7fbp@chr6:44096519..44096530, -
2.53e-41FFCP PHASE1:Hg19::chr5:149877396..149877405,+#_fad72b185a6222c7b81e115275e5c7fbp19@NDST1
2.79e-41FFCP PHASE1:Hg19::chr13:20762566..20762577,-#_8d05fe5f12d50a26ce41fc1d9e840377p@chr13:20762566..20762577, -
2.79e-41FFCP PHASE2:Hg19::chr13:20762566..20762577,-#_8d05fe5f12d50a26ce41fc1d9e840377p@chr13:20762566..20762577, -
7.76e-41FFCP PHASE1:Hg19::chr5:146263947..146263959,-#_f9f4bab6535566951ca876e44950a789p@chr5:146263947..146263959, -
7.76e-41FFCP PHASE2:Hg19::chr5:146263947..146263959,-#_f9f4bab6535566951ca876e44950a789p@chr5:146263947..146263959, -
1.75e-40FFCP PHASE2:Hg19::chr1:183204832..183204840,+#_81344674af14a6462fb888afbc6b60fdp@chr1:183204832..183204840, +
1.75e-40FFCP PHASE1:Hg19::chr1:183204832..183204840,+#_81344674af14a6462fb888afbc6b60fdp@chr1:183204832..183204840, +
1.81e-40FFCP PHASE1:Hg19::chr21:39628993..39628998,+#_5d28b5a9e71b2b34c75eceab98b07686p25@KCNJ15
1.81e-40FFCP PHASE2:Hg19::chr21:39628993..39628998,+#_5d28b5a9e71b2b34c75eceab98b07686p25@KCNJ15
4.05e-40FFCP PHASE1:Hg19::chr2:31560770..31560779,-#_e33bb7e92fdf29007a999a07a55c7d88p@chr2:31560770..31560779, -
4.05e-40FFCP PHASE2:Hg19::chr2:31560770..31560779,-#_e33bb7e92fdf29007a999a07a55c7d88p@chr2:31560770..31560779, -
1.54e-39FFCP PHASE1:Hg19::chr10:3954241..3954256,+#_5d5e186b3f437255718df429932cf2b5p@chr10:3954241..3954256, +
1.54e-39FFCP PHASE2:Hg19::chr10:3954241..3954256,+#_5d5e186b3f437255718df429932cf2b5p@chr10:3954241..3954256, +
1.44e-38FFCP PHASE1:Hg19::chr1:183204785..183204796,+#_76e1a39402cca785bd71b2dade019febp@chr1:183204785..183204796, +
1.44e-38FFCP PHASE2:Hg19::chr1:183204785..183204796,+#_76e1a39402cca785bd71b2dade019febp@chr1:183204785..183204796, +
5.23e-38FFCP PHASE1:Hg19::chr3:52083895..52083904,-#_6665582fd091c71ff0cbbe0d3489870cp21@DUSP7
5.23e-38FFCP PHASE2:Hg19::chr3:52083895..52083904,-#_6665582fd091c71ff0cbbe0d3489870cp21@DUSP7
6.73e-38FFCP PHASE1:Hg19::chr1:183205712..183205723,+#_0b8cc8c5bad0fa29072f649d58dd5719p@chr1:183205712..183205723, +
6.73e-38FFCP PHASE2:Hg19::chr1:183205712..183205723,+#_0b8cc8c5bad0fa29072f649d58dd5719p@chr1:183205712..183205723, +
7.63e-38FFCP PHASE2:Hg19::chr2:43266741..43266748,-#_a7247a611ce8523ef6d5b89364398db5p2@ENST00000449766
7.63e-38FFCP PHASE1:Hg19::chr2:43266741..43266748,-#_a7247a611ce8523ef6d5b89364398db5p2@ENST00000449766
2.18e-37FFCP PHASE1:Hg19::chr13:20763282..20763295,-#_432ccf604c46ce0efe980092c2175238p6@GJB2
2.18e-37FFCP PHASE2:Hg19::chr13:20763282..20763295,-#_432ccf604c46ce0efe980092c2175238p6@GJB2

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