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{{CL
{{CL
|id=CL:0000342
|alt_id=
|name=pigment cell (sensu Vertebrata)
|namespace=cell
|def="Any animal cell containing pigment granules." [GOC:tfm, ISBN:0721662544]
|xref=
|is_a=CL:0000147
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Any animal cell containing pigment granules." [GOC:tfm, ISBN:0721662544]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000342
|is_a=CL:0000147
|is_obsolete=
|located_in=
|located_in=
|name=pigment cell (sensu Vertebrata)
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:33, 12 September 2014

Name:pigment cell (sensu Vertebrata)
Namespace:FANTOM
Definition:"Any animal cell containing pigment granules." [GOC:tfm, ISBN:0721662544]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000147(pigment cell)



Children


is a:CL:0002565 (iris pigment epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000342 (pigment cell (sensu Vertebrata)), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr15:71583868..71583874,-#_27d39cdf0cb0790a5feae026d4f4e494p@chr15:71583868..71583874, -
9.37e-99FFCP PHASE2:Hg19::chr15:71583868..71583874,-#_27d39cdf0cb0790a5feae026d4f4e494p@chr15:71583868..71583874, -
1.23e-66FFCP PHASE2:Hg19::chr5:78112479..78112482,+#_5d2055a32069799bc7ee769e128be522p@chr5:78112479..78112482, +
1.23e-66FFCP PHASE1:Hg19::chr5:78112479..78112482,+#_5d2055a32069799bc7ee769e128be522p@chr5:78112479..78112482, +
2.39e-66FFCP PHASE1:Hg19::chr15:74495062..74495063,-#_d5902c8d1bf97dffbeaa38854258869cp13@STRA6
2.39e-66FFCP PHASE2:Hg19::chr15:74495062..74495063,-#_d5902c8d1bf97dffbeaa38854258869cp13@STRA6
4.66e-66FFCP PHASE2:Hg19::chr22:50667406..50667412,+#_977f032101d6121fcfcb26ee2408a88bp@chr22:50667406..50667412, +
4.66e-66FFCP PHASE1:Hg19::chr22:50667406..50667412,+#_977f032101d6121fcfcb26ee2408a88bp@chr22:50667406..50667412, +
1.46e-50FFCP PHASE2:Hg19::chr8:53853688..53853698,-#_8b016c87a1de5c88ad58a7060c73bb02p3@BC033145
1.46e-50FFCP PHASE1:Hg19::chr8:53853688..53853698,-#_8b016c87a1de5c88ad58a7060c73bb02p3@BC033145
2.42e-50FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_34cf3355b2e7a2547af23d1c8c0ea5a6p@chr7:115723897..115723915, -
2.42e-50FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_34cf3355b2e7a2547af23d1c8c0ea5a6p@chr7:115723897..115723915, -
6.58e-50FFCP PHASE1:Hg19::chr14:100847969..100847980,+#_2192270109af71b469a39f10e12d4ba1p6@WDR25
6.58e-50FFCP PHASE2:Hg19::chr14:100847969..100847980,+#_2192270109af71b469a39f10e12d4ba1p6@WDR25
6.62e-41FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_6136e6b3ed132b87d0f72044ae3431a4p@chr2:35680607..35680613, -
6.62e-41FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_6136e6b3ed132b87d0f72044ae3431a4p@chr2:35680607..35680613, -
6.62e-41FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_6136e6b3ed132b87d0f72044ae3431a4p@chr7:131803806..131803815, +
6.62e-41FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_6136e6b3ed132b87d0f72044ae3431a4p@chr7:131803806..131803815, +
9.91e-41FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_d40e8f249c9318692495c8587799f716p@chr7:115723925..115723935, -
9.91e-41FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_d40e8f249c9318692495c8587799f716p@chr7:115723925..115723935, -
9.91e-41FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_d40e8f249c9318692495c8587799f716p@chrX:106198807..106198826, -
9.91e-41FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_d40e8f249c9318692495c8587799f716p@chrX:106198807..106198826, -
1.48e-40FFCP PHASE1:Hg19::chr5:34728676..34728679,+#_04262bfcb5694ab0c3fd99ce63362af2p26@RAI14
1.48e-40FFCP PHASE2:Hg19::chr5:34728676..34728679,+#_04262bfcb5694ab0c3fd99ce63362af2p26@RAI14
2.21e-40FFCP PHASE1:Hg19::chr15:41062022..41062028,+#_c0dc37af1012654371ba7480a70508a8p3@C15orf62
2.21e-40FFCP PHASE2:Hg19::chr15:41062022..41062028,+#_c0dc37af1012654371ba7480a70508a8p3@C15orf62
3.3e-40FFCP PHASE2:Hg19::chr1:94583454..94583465,-#_a94887f6dadbd546de76679573d28928p@chr1:94583454..94583465, -
3.3e-40FFCP PHASE1:Hg19::chr1:94583454..94583465,-#_a94887f6dadbd546de76679573d28928p@chr1:94583454..94583465, -
3.3e-40FFCP PHASE1:Hg19::chr4:88447806..88447810,+#_a94887f6dadbd546de76679573d28928p@chr4:88447806..88447810, +
3.3e-40FFCP PHASE2:Hg19::chr16:80552480..80552487,-#_a94887f6dadbd546de76679573d28928p@chr16:80552480..80552487, -
3.3e-40FFCP PHASE1:Hg19::chr16:80552480..80552487,-#_a94887f6dadbd546de76679573d28928p@chr16:80552480..80552487, -
3.3e-40FFCP PHASE2:Hg19::chr3:98671855..98671858,+#_a94887f6dadbd546de76679573d28928p@chr3:98671855..98671858, +
3.3e-40FFCP PHASE1:Hg19::chr3:98671855..98671858,+#_a94887f6dadbd546de76679573d28928p@chr3:98671855..98671858, +
3.3e-40FFCP PHASE2:Hg19::chr4:88447806..88447810,+#_a94887f6dadbd546de76679573d28928p@chr4:88447806..88447810, +
2.58e-34FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_a61a0cefa0f306e9045c59b5ee201bbfp@chr11:31667372..31667383, -
2.58e-34FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_a61a0cefa0f306e9045c59b5ee201bbfp@chr11:31667372..31667383, -
2.58e-34FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_a61a0cefa0f306e9045c59b5ee201bbfp@chr3:98672197..98672201, +
2.58e-34FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_a61a0cefa0f306e9045c59b5ee201bbfp@chr3:98672197..98672201, +
3.61e-34FFCP PHASE2:Hg19::chr15:69339407..69339410,+#_7354ca0c53fd5e4090b44a72fc514694p3@NOX5
3.61e-34FFCP PHASE1:Hg19::chr15:69339407..69339410,+#_7354ca0c53fd5e4090b44a72fc514694p3@NOX5
7.06e-34FFCP PHASE2:Hg19::chr14:85705824..85705844,-#_f41c82663f1a6f40da2a084bae4c0a18p1@ENST00000556016
7.06e-34FFCP PHASE2:Hg19::chr14:61929802..61929817,+#_f41c82663f1a6f40da2a084bae4c0a18p35@PRKCH
7.06e-34FFCP PHASE2:Hg19::chr1:8938123..8938135,-#_f41c82663f1a6f40da2a084bae4c0a18p3@ENO1-IT1
7.06e-34FFCP PHASE1:Hg19::chr1:8938123..8938135,-#_f41c82663f1a6f40da2a084bae4c0a18p3@ENO1-IT1
7.06e-34FFCP PHASE1:Hg19::chr14:85705824..85705844,-#_f41c82663f1a6f40da2a084bae4c0a18p1@ENST00000556016
7.06e-34FFCP PHASE1:Hg19::chr14:61929802..61929817,+#_f41c82663f1a6f40da2a084bae4c0a18p35@PRKCH
7.48e-30FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_9c90d5865359b1d382234c0b60067fe4p1@BC033145
7.48e-30FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_9c90d5865359b1d382234c0b60067fe4p1@BC033145
9.99e-30FFCP PHASE2:Hg19::chr9:75489043..75489052,-#_7cfcb9ed7b8509b16d65f4c0cb4b2fe8p1@ENST00000453787
9.99e-30FFCP PHASE1:Hg19::chr9:75489043..75489052,-#_7cfcb9ed7b8509b16d65f4c0cb4b2fe8p1@ENST00000453787
1.33e-29FFCP PHASE2:Hg19::chr7:43417422..43417435,+#_460203b2aadab4cbbda86c6892da8422p16@HECW1
1.33e-29FFCP PHASE1:Hg19::chr7:43417422..43417435,+#_460203b2aadab4cbbda86c6892da8422p16@HECW1
2.37e-29FFCP PHASE2:Hg19::chr21:16374688..16374703,-#_e671cc2b77215357cbb30409d0af39dbp6@NRIP1
2.37e-29FFCP PHASE1:Hg19::chr21:16374688..16374703,-#_e671cc2b77215357cbb30409d0af39dbp6@NRIP1
3.16e-29FFCP PHASE2:Hg19::chr7:151433200..151433217,-#_8a4e4caaf7559902737d2a12622a6253p31@PRKAG2
3.16e-29FFCP PHASE1:Hg19::chr7:151433200..151433217,-#_8a4e4caaf7559902737d2a12622a6253p31@PRKAG2
3.16e-29FFCP PHASE2:Hg19::chr10:91043389..91043400,+#_8a4e4caaf7559902737d2a12622a6253p3@ENST00000444849
3.16e-29FFCP PHASE1:Hg19::chr10:91043389..91043400,+#_8a4e4caaf7559902737d2a12622a6253p3@ENST00000444849
4.2e-29FFCP PHASE1:Hg19::chr12:13025302..13025313,+#_f9c75d97a661b303fa82b777d07aa77cp@chr12:13025302..13025313, +
4.2e-29FFCP PHASE2:Hg19::chr12:13025302..13025313,+#_f9c75d97a661b303fa82b777d07aa77cp@chr12:13025302..13025313, +
5.93e-26FFCP PHASE2:Hg19::chr6:125540724..125540736,+#_1aba9ec3de298396d1e87ebeb3c93d77p12@TPD52L1
5.93e-26FFCP PHASE1:Hg19::chr6:125540724..125540736,+#_1aba9ec3de298396d1e87ebeb3c93d77p12@TPD52L1
9.79e-26FFCP PHASE2:Hg19::chr21:41160614..41160621,+#_920f2a8cd600e76782241ca5687ab338p@chr21:41160614..41160621, +
9.79e-26FFCP PHASE1:Hg19::chr21:41160614..41160621,+#_920f2a8cd600e76782241ca5687ab338p@chr21:41160614..41160621, +
2.1e-23FFCP PHASE1:Hg19::chr14:61929948..61929975,+#_63b39dbfe4456d9c3129fbfcb0ad0143p20@PRKCH
2.1e-23FFCP PHASE2:Hg19::chr14:61929948..61929975,+#_63b39dbfe4456d9c3129fbfcb0ad0143p20@PRKCH
4.1e-23FFCP PHASE2:Hg19::chr2:16804394..16804406,-#_e20568c4fbae8ad78b24ae61344a8f0cp6@FAM49A
4.1e-23FFCP PHASE1:Hg19::chr2:16804394..16804406,-#_e20568c4fbae8ad78b24ae61344a8f0cp6@FAM49A
1.88e-21FFCP PHASE2:Hg19::chr3:55002159..55002164,+#_ae9cd99c516ff5f5c88c29a98fef5e54p@chr3:55002159..55002164, +
1.88e-21FFCP PHASE1:Hg19::chr3:55002159..55002164,+#_ae9cd99c516ff5f5c88c29a98fef5e54p@chr3:55002159..55002164, +
4.22e-21FFCP PHASE2:Hg19::chr21:16374660..16374679,-#_c1c83446771d75a233e9413dbe11bd2ap4@NRIP1
4.22e-21FFCP PHASE1:Hg19::chr21:16374660..16374679,-#_c1c83446771d75a233e9413dbe11bd2ap4@NRIP1
6.31e-21FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_cc9e4ed4c5bb0caeff55939ad83179acp2@ENST00000354541
6.31e-21FFCP PHASE2:Hg19::chr8:145011875..145011879,+#_cc9e4ed4c5bb0caeff55939ad83179acp@chr8:145011875..145011879, +
6.31e-21FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_cc9e4ed4c5bb0caeff55939ad83179acp2@ENST00000354541
6.31e-21FFCP PHASE1:Hg19::chr8:145011875..145011879,+#_cc9e4ed4c5bb0caeff55939ad83179acp@chr8:145011875..145011879, +
7.72e-21FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_edf666ea732d341938168e4ae06585fbp@chr8:124692287..124692298, +
7.72e-21FFCP PHASE2:Hg19::chr15:67524744..67524745,+#_edf666ea732d341938168e4ae06585fbp1@ENST00000497294
7.72e-21FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_edf666ea732d341938168e4ae06585fbp@chr8:124692287..124692298, +
7.72e-21FFCP PHASE2:Hg19::chr11:31014065..31014073,-#_edf666ea732d341938168e4ae06585fbp1@DCDC5
7.72e-21FFCP PHASE1:Hg19::chr15:67524744..67524745,+#_edf666ea732d341938168e4ae06585fbp1@ENST00000497294
7.72e-21FFCP PHASE1:Hg19::chr11:31014065..31014073,-#_edf666ea732d341938168e4ae06585fbp1@DCDC5
9.43e-21FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_c67b29bb8408777b9bd2c364a504c8aap1@CLRN1
9.43e-21FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_c67b29bb8408777b9bd2c364a504c8aap1@CLRN1
1.3e-19FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_868991654ca229defb99d9da7fe0cc7ep@chr14:87636652..87636657, -
1.3e-19FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_868991654ca229defb99d9da7fe0cc7ep@chr14:87636652..87636657, -
2.25e-19FFCP PHASE2:Hg19::chr14:61929781..61929801,+#_0680145bd2dadfaed206c18f487fa116p27@PRKCH
2.25e-19FFCP PHASE1:Hg19::chr14:61929781..61929801,+#_0680145bd2dadfaed206c18f487fa116p27@PRKCH
3.25e-19FFCP PHASE2:Hg19::chrX:106243285..106243290,-#_f9d6cb70c89cd68e4de7fcd5c513525dp8@MORC4
3.25e-19FFCP PHASE2:Hg19::chr3:147131290..147131301,+#_f9d6cb70c89cd68e4de7fcd5c513525dp@chr3:147131290..147131301, +
3.25e-19FFCP PHASE1:Hg19::chrX:106243285..106243290,-#_f9d6cb70c89cd68e4de7fcd5c513525dp8@MORC4
3.25e-19FFCP PHASE1:Hg19::chr3:147131290..147131301,+#_f9d6cb70c89cd68e4de7fcd5c513525dp@chr3:147131290..147131301, +
3.91e-19FFCP PHASE1:Hg19::chr14:62037117..62037132,+#_0b0669206c63c339d05cf478db6ca091p7@FLJ22447
3.91e-19FFCP PHASE2:Hg19::chr14:62037117..62037132,+#_0b0669206c63c339d05cf478db6ca091p7@FLJ22447
4.44e-18FFCP PHASE2:Hg19::chr4:150666211..150666212,+#_657cb7197bfdc953229d171fb5171016p@chr4:150666211..150666212, +
4.44e-18FFCP PHASE1:Hg19::chr4:150666211..150666212,+#_657cb7197bfdc953229d171fb5171016p@chr4:150666211..150666212, +
5.26e-18FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_1353446153273a3a904b446e84406db7p7@PTPRU
5.26e-18FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_1353446153273a3a904b446e84406db7p7@PTPRU
6.23e-18FFCP PHASE1:Hg19::chr5:138852090..138852095,+#_1f7971fe107e94d58c178087c148a498p@chr5:138852090..138852095, +
6.23e-18FFCP PHASE2:Hg19::chr5:138852090..138852095,+#_1f7971fe107e94d58c178087c148a498p@chr5:138852090..138852095, +

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