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{{CL
{{CL
|id=CL:0000549
|alt_id=
|name=basophilic erythroblast
|namespace=efo
|def="A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers." [GOC:tfm, ISBN:0721601464]
|xref=FMA:83505
|is_a=CL:0000765
|synonym="basophilic normoblast" EXACT [ISBN:0721601464];;"early erythroblast" EXACT [ISBN:0721601464];;"early normoblast" EXACT [ISBN:0721601464];;"prorubricyte" EXACT [ISBN:0721601464]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers." [GOC:tfm, ISBN:0721601464]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000547
|develops_from=CL:0000547
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000549
|is_a=CL:0000765
|is_obsolete=
|located_in=
|located_in=
|name=basophilic erythroblast
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="basophilic normoblast" EXACT [ISBN:0721601464];;"early erythroblast" EXACT [ISBN:0721601464];;"early normoblast" EXACT [ISBN:0721601464];;"prorubricyte" EXACT [ISBN:0721601464]
|union_of=
|xref=FMA:83505
}}
}}

Latest revision as of 16:34, 12 September 2014

Name:basophilic erythroblast
Namespace:FANTOM
Definition:"A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers." [GOC:tfm, ISBN:0721601464]
Xrefs:
links:
FMA:83505
Synonyms: "basophilic normoblast" EXACT [ISBN:0721601464]
"early erythroblast" EXACT [ISBN:0721601464]
"early normoblast" EXACT [ISBN:0721601464]
"prorubricyte" EXACT [ISBN:0721601464]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000765(erythroblast)
develops_from:CL:0000547(proerythroblast)



Children


develops from:CL:0000550 (polychromatophilic erythroblast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000549 (basophilic erythroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr11:66676050..66676060,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr11:66676050..66676060, +
3.29e-195FFCP PHASE2:Hg19::chr4:26378984..26378987,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr4:26378984..26378987, +
3.29e-195FFCP PHASE2:Hg19::chr3:49726589..49726592,+#_a24f6a3933cd5fac83495cc823cd44d5p7@RNF123
3.29e-195FFCP PHASE2:Hg19::chr11:5255612..5255613,-#_a24f6a3933cd5fac83495cc823cd44d5p10@HBD
3.29e-195FFCP PHASE1:Hg19::chr11:29581179..29581180,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr11:29581179..29581180, +
3.29e-195FFCP PHASE1:Hg19::chr8:138915590..138915591,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr8:138915590..138915591, +
3.29e-195FFCP PHASE1:Hg19::chr1:2250692..2250695,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr1:2250692..2250695, +
3.29e-195FFCP PHASE2:Hg19::chr2:112191654..112191660,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr2:112191654..112191660, -
3.29e-195FFCP PHASE2:Hg19::chr11:29581179..29581180,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr11:29581179..29581180, +
3.29e-195FFCP PHASE1:Hg19::chr1:25598971..25598977,+#_a24f6a3933cd5fac83495cc823cd44d5p4@RHD
3.29e-195FFCP PHASE2:Hg19::chr13:78682773..78682778,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr13:78682773..78682778, +
3.29e-195FFCP PHASE2:Hg19::chr11:57415965..57415973,+#_a24f6a3933cd5fac83495cc823cd44d5p5@CLP1
3.29e-195FFCP PHASE2:Hg19::chr14:55799575..55799582,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr14:55799575..55799582, +
3.29e-195FFCP PHASE1:Hg19::chr17:42392517..42392522,+#_a24f6a3933cd5fac83495cc823cd44d5p17@RUNDC3A
3.29e-195FFCP PHASE1:Hg19::chr8:63838198..63838201,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr8:63838198..63838201, +
3.29e-195FFCP PHASE2:Hg19::chr4:160049078..160049079,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr4:160049078..160049079, +
3.29e-195FFCP PHASE1:Hg19::chr11:5248435..5248444,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr11:5248435..5248444, +
3.29e-195FFCP PHASE2:Hg19::chr1:25598961..25598966,+#_a24f6a3933cd5fac83495cc823cd44d5p5@RHD
3.29e-195FFCP PHASE2:Hg19::chr16:227522..227524,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr16:227522..227524, +
3.29e-195FFCP PHASE1:Hg19::chr2:62801311..62801318,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr2:62801311..62801318, +
3.29e-195FFCP PHASE1:Hg19::chr2:87816262..87816269,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr2:87816262..87816269, +
3.29e-195FFCP PHASE1:Hg19::chr11:5247730..5247736,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr11:5247730..5247736, -
3.29e-195FFCP PHASE1:Hg19::chr22:30680245..30680254,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr22:30680245..30680254, -
3.29e-195FFCP PHASE2:Hg19::chr11:5248435..5248444,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr11:5248435..5248444, +
3.29e-195FFCP PHASE1:Hg19::chr16:67228546..67228549,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr16:67228546..67228549, +
3.29e-195FFCP PHASE1:Hg19::chr21:27203678..27203684,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr21:27203678..27203684, +
3.29e-195FFCP PHASE2:Hg19::chr8:101412217..101412218,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr8:101412217..101412218, +
3.29e-195FFCP PHASE2:Hg19::chr9:45465498..45465501,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr9:45465498..45465501, +
3.29e-195FFCP PHASE1:Hg19::chr20:24432163..24432165,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr20:24432163..24432165, +
3.29e-195FFCP PHASE2:Hg19::chr11:5247730..5247736,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr11:5247730..5247736, -
3.29e-195FFCP PHASE1:Hg19::chr11:57415965..57415973,+#_a24f6a3933cd5fac83495cc823cd44d5p5@CLP1
3.29e-195FFCP PHASE2:Hg19::chr6:50700492..50700495,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr6:50700492..50700495, +
3.29e-195FFCP PHASE1:Hg19::chr7:23205190..23205198,+#_a24f6a3933cd5fac83495cc823cd44d5p10@KLHL7
3.29e-195FFCP PHASE2:Hg19::chrX:107332036..107332041,+#_a24f6a3933cd5fac83495cc823cd44d5p@chrX:107332036..107332041, +
3.29e-195FFCP PHASE1:Hg19::chr13:78682773..78682778,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr13:78682773..78682778, +
3.29e-195FFCP PHASE2:Hg19::chr3:49726593..49726603,+#_a24f6a3933cd5fac83495cc823cd44d5p4@RNF123
3.29e-195FFCP PHASE2:Hg19::chr1:207823590..207823599,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr1:207823590..207823599, +
3.29e-195FFCP PHASE1:Hg19::chr1:95582484..95582492,+#_a24f6a3933cd5fac83495cc823cd44d5p10@TMEM56
3.29e-195FFCP PHASE1:Hg19::chr1:25598993..25599007,+#_a24f6a3933cd5fac83495cc823cd44d5p1@RHD
3.29e-195FFCP PHASE1:Hg19::chr16:227522..227524,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr16:227522..227524, +
3.29e-195FFCP PHASE2:Hg19::chr20:24432163..24432165,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr20:24432163..24432165, +
3.29e-195FFCP PHASE1:Hg19::chr19:1207927..1207939,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr19:1207927..1207939, -
3.29e-195FFCP PHASE1:Hg19::chr1:220146675..220146678,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr1:220146675..220146678, -
3.29e-195FFCP PHASE1:Hg19::chr1:5543682..5543685,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr1:5543682..5543685, +
3.29e-195FFCP PHASE2:Hg19::chr1:2250692..2250695,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr1:2250692..2250695, +
3.29e-195FFCP PHASE1:Hg19::chr4:82805715..82805717,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr4:82805715..82805717, +
3.29e-195FFCP PHASE2:Hg19::chr18:11740276..11740278,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr18:11740276..11740278, +
3.29e-195FFCP PHASE2:Hg19::chr13:23969126..23969130,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr13:23969126..23969130, +
3.29e-195FFCP PHASE2:Hg19::chr1:25598971..25598977,+#_a24f6a3933cd5fac83495cc823cd44d5p4@RHD
3.29e-195FFCP PHASE1:Hg19::chr6:155472342..155472346,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr6:155472342..155472346, -
3.29e-195FFCP PHASE2:Hg19::chr2:62801311..62801318,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr2:62801311..62801318, +
3.29e-195FFCP PHASE1:Hg19::chr10:94679592..94679594,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr10:94679592..94679594, -
3.29e-195FFCP PHASE1:Hg19::chr4:175593804..175593809,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr4:175593804..175593809, +
3.29e-195FFCP PHASE2:Hg19::chr8:138915590..138915591,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr8:138915590..138915591, +
3.29e-195FFCP PHASE2:Hg19::chr21:27203678..27203684,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr21:27203678..27203684, +
3.29e-195FFCP PHASE1:Hg19::chr7:23205201..23205207,+#_a24f6a3933cd5fac83495cc823cd44d5p13@KLHL7
3.29e-195FFCP PHASE2:Hg19::chr2:87816262..87816269,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr2:87816262..87816269, +
3.29e-195FFCP PHASE1:Hg19::chr6:10585661..10585670,+#_a24f6a3933cd5fac83495cc823cd44d5p26@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr22:30680245..30680254,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr22:30680245..30680254, -
3.29e-195FFCP PHASE2:Hg19::chr10:94679592..94679594,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr10:94679592..94679594, -
3.29e-195FFCP PHASE1:Hg19::chr14:55799575..55799582,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr14:55799575..55799582, +
3.29e-195FFCP PHASE2:Hg19::chr7:23205190..23205198,+#_a24f6a3933cd5fac83495cc823cd44d5p10@KLHL7
3.29e-195FFCP PHASE2:Hg19::chr13:106256314..106256318,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr13:106256314..106256318, +
3.29e-195FFCP PHASE2:Hg19::chr17:27188395..27188398,-#_a24f6a3933cd5fac83495cc823cd44d5p1@MIR451A
3.29e-195FFCP PHASE2:Hg19::chr11:57416011..57416016,+#_a24f6a3933cd5fac83495cc823cd44d5p9@CLP1
3.29e-195FFCP PHASE2:Hg19::chr8:63838198..63838201,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr8:63838198..63838201, +
3.29e-195FFCP PHASE1:Hg19::chr1:25599018..25599028,+#_a24f6a3933cd5fac83495cc823cd44d5p3@RHD
3.29e-195FFCP PHASE1:Hg19::chr9:138852021..138852030,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr9:138852021..138852030, +
3.29e-195FFCP PHASE1:Hg19::chr4:190941380..190941381,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr4:190941380..190941381, +
3.29e-195FFCP PHASE1:Hg19::chr3:49726561..49726577,+#_a24f6a3933cd5fac83495cc823cd44d5p3@RNF123
3.29e-195FFCP PHASE1:Hg19::chr19:19535964..19535966,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr19:19535964..19535966, +
3.29e-195FFCP PHASE1:Hg19::chr13:23969126..23969130,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr13:23969126..23969130, +
3.29e-195FFCP PHASE1:Hg19::chr2:71833597..71833600,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr2:71833597..71833600, +
3.29e-195FFCP PHASE2:Hg19::chr16:15616042..15616045,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr16:15616042..15616045, +
3.29e-195FFCP PHASE2:Hg19::chr1:95582484..95582492,+#_a24f6a3933cd5fac83495cc823cd44d5p10@TMEM56
3.29e-195FFCP PHASE2:Hg19::chr6:10585661..10585670,+#_a24f6a3933cd5fac83495cc823cd44d5p26@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr1:25598993..25599007,+#_a24f6a3933cd5fac83495cc823cd44d5p1@RHD
3.29e-195FFCP PHASE2:Hg19::chr19:1207927..1207939,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr19:1207927..1207939, -
3.29e-195FFCP PHASE2:Hg19::chr17:42366115..42366125,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr17:42366115..42366125, +
3.29e-195FFCP PHASE1:Hg19::chr1:158580993..158580998,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr1:158580993..158580998, -
3.29e-195FFCP PHASE2:Hg19::chr1:220146675..220146678,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr1:220146675..220146678, -
3.29e-195FFCP PHASE1:Hg19::chr9:123853258..123853276,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr9:123853258..123853276, -
3.29e-195FFCP PHASE1:Hg19::chr11:115492263..115492265,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr11:115492263..115492265, +
3.29e-195FFCP PHASE2:Hg19::chr6:155472342..155472346,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr6:155472342..155472346, -
3.29e-195FFCP PHASE1:Hg19::chr18:11740276..11740278,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr18:11740276..11740278, +
3.29e-195FFCP PHASE2:Hg19::chr1:5543682..5543685,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr1:5543682..5543685, +
3.29e-195FFCP PHASE2:Hg19::chr12:75560876..75560881,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr12:75560876..75560881, +
3.29e-195FFCP PHASE2:Hg19::chr4:82805715..82805717,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr4:82805715..82805717, +
3.29e-195FFCP PHASE1:Hg19::chr11:57416011..57416016,+#_a24f6a3933cd5fac83495cc823cd44d5p9@CLP1
3.29e-195FFCP PHASE2:Hg19::chr11:115492263..115492265,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr11:115492263..115492265, +
3.29e-195FFCP PHASE2:Hg19::chr16:67228546..67228549,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr16:67228546..67228549, +
3.29e-195FFCP PHASE1:Hg19::chr13:106256314..106256318,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr13:106256314..106256318, +
3.29e-195FFCP PHASE1:Hg19::chr12:131245491..131245492,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr12:131245491..131245492, +
3.29e-195FFCP PHASE1:Hg19::chr6:10585672..10585677,+#_a24f6a3933cd5fac83495cc823cd44d5p42@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr7:23205201..23205207,+#_a24f6a3933cd5fac83495cc823cd44d5p13@KLHL7
3.29e-195FFCP PHASE2:Hg19::chr14:96742091..96742094,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr14:96742091..96742094, -
3.29e-195FFCP PHASE2:Hg19::chr12:131245491..131245492,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr12:131245491..131245492, +
3.29e-195FFCP PHASE2:Hg19::chr15:71406717..71406718,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr15:71406717..71406718, +
3.29e-195FFCP PHASE2:Hg19::chr4:175593804..175593809,+#_a24f6a3933cd5fac83495cc823cd44d5p@chr4:175593804..175593809, +
3.29e-195FFCP PHASE2:Hg19::chr17:42343955..42343974,-#_a24f6a3933cd5fac83495cc823cd44d5p@chr17:42343955..42343974, -

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