Personal tools

CL:0002076: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0002076 |name=endo-epithelial cell |namespace=cell |def="An epithelial cell derived from endoderm." [FMA:69075, GOC:tfm, http://63.198.234.228/OpenFMA/Endo-epi...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002076
|alt_id=
|name=endo-epithelial cell
|namespace=cell
|def="An epithelial cell derived from endoderm." [FMA:69075, GOC:tfm, http://63.198.234.228/OpenFMA/Endo-epithelial cell.html]
|xref=FMA:69075
|is_a=CL:0000066;;CL:0002371
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-06-29T03:38:14Z
|def="An epithelial cell derived from endoderm." [FMA:69075, GOC:tfm, http://63.198.234.228/OpenFMA/Endo-epithelial%20cell.html]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000223
|develops_from=CL:0000223
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002076
|is_a=CL:0000066 ;;CL:0002371
|is_obsolete=
|located_in=
|located_in=
|name=endo-epithelial cell
|namespace=FANTOM
|obo_creation_date=2010-06-29T03:38:14Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=FMA:69075
}}
}}

Latest revision as of 16:40, 12 September 2014

Name:endo-epithelial cell
Namespace:FANTOM
Definition:"An epithelial cell derived from endoderm." [FMA:69075, GOC:tfm, http://63.198.234.228/OpenFMA/Endo-epithelial%20cell.html]
Xrefs:
links:
FMA:69075
Created by:tmeehan
Creation date:2010-06-29T03:38:14Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000066(epithelial cell),CL:0002371(somatic cell)
develops_from:CL:0000223(endodermal cell)



Children


is a:CL:0002149 (epithelial cell of uterus),CL:0002231 (epithelial cell of prostate),CL:0002251 (epithelial cell of alimentary canal),CL:0002261 (endothelial cell of viscerocranial mucosa),CL:0002293 (epithelial cell of thymus),CL:0002368 (respiratory epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002076 (endo-epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.06e-52FFCP PHASE1:Mm9::chr2:173090551..173090558,+#_e709aa2ebfec49a9fba8cb8d072abd37p@chr2:173090551..173090558, +
5.06e-52FFCP PHASE2:Mm9::chr2:173090551..173090558,+#_e709aa2ebfec49a9fba8cb8d072abd37p@chr2:173090551..173090558, +
5.94e-49FFCP PHASE1:Mm9::chr2:167904248..167904260,+#_6736af1f58aa4dce06b1346b22afce88p@chr2:167904248..167904260, +
5.94e-49FFCP PHASE2:Mm9::chr2:167904248..167904260,+#_6736af1f58aa4dce06b1346b22afce88p@chr2:167904248..167904260, +
1.31e-48FFCP PHASE1:Hg19::chr15:83953694..83953708,-#_50f8dec9b4b2a04e831d780b99d132adp4@BNC1
1.31e-48FFCP PHASE2:Hg19::chr15:83953694..83953708,-#_50f8dec9b4b2a04e831d780b99d132adp4@BNC1
6.25e-47FFCP PHASE2:Mm9::chr1:90912298..90912303,+#_deb1e0498dc8cb0822a154694f7d517ap3@1700067G17Rik
6.25e-47FFCP PHASE1:Mm9::chr1:90912298..90912303,+#_deb1e0498dc8cb0822a154694f7d517ap3@1700067G17Rik
2.35e-46FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_3fb2c77b4603b13f479d0901a1be0e54p@chr8:122335239..122335244, +
2.35e-46FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_3fb2c77b4603b13f479d0901a1be0e54p@chr8:122335239..122335244, +
6.82e-46FFCP PHASE2:Hg19::chr2:131669765..131669776,+#_763f9d536e4f09d4b0f6d29385a397c1p@chr2:131669765..131669776, +
6.82e-46FFCP PHASE1:Hg19::chr2:131669765..131669776,+#_763f9d536e4f09d4b0f6d29385a397c1p@chr2:131669765..131669776, +
3.7e-44FFCP PHASE1:Hg19::chr3:189653493..189653498,-#_f2eef1d1dc4891adbd7d33e8c15afe2fp@chr3:189653493..189653498, -
3.7e-44FFCP PHASE2:Hg19::chr3:189653493..189653498,-#_f2eef1d1dc4891adbd7d33e8c15afe2fp@chr3:189653493..189653498, -
4.73e-44FFCP PHASE2:Hg19::chr6:56484092..56484104,-#_94e9fcc09347e2ee4b7c74a5799cedacp63@DST
4.73e-44FFCP PHASE1:Hg19::chr6:56484092..56484104,-#_94e9fcc09347e2ee4b7c74a5799cedacp63@DST
8.81e-44FFCP PHASE1:Mm9::chr7:123602470..123602475,-#_59774b8b6567f24cc9708cd3ca12f63fp@chr7:123602470..123602475, -
8.81e-44FFCP PHASE2:Mm9::chr7:123602470..123602475,-#_59774b8b6567f24cc9708cd3ca12f63fp@chr7:123602470..123602475, -
1.67e-43FFCP PHASE2:Hg19::chr20:60953877..60953897,-#_ad2dd4d142f61f60defad88e94f3f700p@chr20:60953877..60953897, -
1.67e-43FFCP PHASE1:Hg19::chr20:60953877..60953897,-#_ad2dd4d142f61f60defad88e94f3f700p@chr20:60953877..60953897, -
9.2e-43FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_8cca1d1d952dab1a7ef48a68bcb91e5ep@chr17:57201412..57201418, -
9.2e-43FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_8cca1d1d952dab1a7ef48a68bcb91e5ep@chr17:57201412..57201418, -
1.73e-42FFCP PHASE2:Hg19::chr3:69590414..69590433,-#_7b89c448da949131d1ead15aa162f26ap14@FRMD4B
1.73e-42FFCP PHASE1:Hg19::chr3:69590414..69590433,-#_7b89c448da949131d1ead15aa162f26ap14@FRMD4B
4.83e-42FFCP PHASE2:Hg19::chr17:39942208..39942219,-#_49b933f1d44be20cc80cdbb2b3bff720p7@JUP
4.83e-42FFCP PHASE1:Hg19::chr17:39942208..39942219,-#_49b933f1d44be20cc80cdbb2b3bff720p7@JUP
5.81e-42FFCP PHASE2:Hg19::chr1:153534037..153534052,-#_f115aa91d058350bdea02d51c2fe10e7p@chr1:153534037..153534052, -
5.81e-42FFCP PHASE1:Hg19::chr1:153534037..153534052,-#_f115aa91d058350bdea02d51c2fe10e7p@chr1:153534037..153534052, -
7.07e-42FFCP PHASE2:Hg19::chr1:153536234..153536259,-#_4ac3c77a6996a1743d35e0c4b12fb8cdp9@S100A2
7.07e-42FFCP PHASE1:Hg19::chr1:153536234..153536259,-#_4ac3c77a6996a1743d35e0c4b12fb8cdp9@S100A2
1.64e-41FFCP PHASE1:Hg19::chr8:144815895..144815912,-#_8c21ab541e0cc157db7c0591f285abd5p4@FAM83H
1.64e-41FFCP PHASE2:Hg19::chr8:144815895..144815912,-#_8c21ab541e0cc157db7c0591f285abd5p4@FAM83H
2.3e-41FFCP PHASE2:Hg19::chr1:35220725..35220754,+#_976ba146628c4c26780a1a2073935136p2@GJB5
2.3e-41FFCP PHASE1:Hg19::chr1:35220725..35220754,+#_976ba146628c4c26780a1a2073935136p2@GJB5
3.02e-41FFCP PHASE2:Hg19::chr17:39942245..39942256,-#_bd5dc97225f6f1e051ea3f9b49b058ecp9@JUP
3.02e-41FFCP PHASE1:Hg19::chr17:39942245..39942256,-#_bd5dc97225f6f1e051ea3f9b49b058ecp9@JUP
3.42e-41FFCP PHASE2:Mm9::chr4:155434167..155434177,+#_47add4bfcdb13262961400021ceeca41p@chr4:155434167..155434177, +
3.42e-41FFCP PHASE1:Mm9::chr4:155434167..155434177,+#_47add4bfcdb13262961400021ceeca41p@chr4:155434167..155434177, +
3.68e-41FFCP PHASE2:Hg19::chr1:153536265..153536284,-#_d007c32f0315bfc3833c1fdb5d60551dp11@S100A2
3.68e-41FFCP PHASE1:Hg19::chr1:153536265..153536284,-#_d007c32f0315bfc3833c1fdb5d60551dp11@S100A2
4.0e-41FFCP PHASE1:Mm9::chr18:36576247..36576252,-#_3618b53916512bb518e401c29a21ca7ap@chr18:36576247..36576252, -
4.0e-41FFCP PHASE2:Mm9::chr18:36576247..36576252,-#_3618b53916512bb518e401c29a21ca7ap@chr18:36576247..36576252, -
4.1e-41FFCP PHASE2:Hg19::chr1:2360084..2360095,+#_10987fbd8ad12cbc5e371e9dac2834d8p@chr1:2360084..2360095, +
4.1e-41FFCP PHASE1:Hg19::chr1:2360084..2360095,+#_10987fbd8ad12cbc5e371e9dac2834d8p@chr1:2360084..2360095, +
4.99e-41FFCP PHASE1:Hg19::chr14:51955873..51955899,+#_f5a6dbc8605257b5cde78987f3257ae9p12@FRMD6
4.99e-41FFCP PHASE2:Hg19::chr14:51955873..51955899,+#_f5a6dbc8605257b5cde78987f3257ae9p12@FRMD6
1.03e-40FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_aacbd67e2e53724be0f30d03fb4aa81dp@chr8:64192378..64192389, +
1.03e-40FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_aacbd67e2e53724be0f30d03fb4aa81dp@chr8:64192378..64192389, +
1.34e-40FFCP PHASE2:Hg19::chr14:51955524..51955550,+#_30db77e0c44a2555d6334819bd37fc73p9@FRMD6
1.34e-40FFCP PHASE1:Hg19::chr14:51955524..51955550,+#_30db77e0c44a2555d6334819bd37fc73p9@FRMD6
2.97e-40FFCP PHASE2:Hg19::chr3:189027876..189027892,+#_2a36f27b4613f30e3e7c8049a3e3b344p1@TPRG1
2.97e-40FFCP PHASE1:Hg19::chr3:189027876..189027892,+#_2a36f27b4613f30e3e7c8049a3e3b344p1@TPRG1
3.08e-40FFCP PHASE1:Hg19::chr1:209602671..209602695,+#_533400f4f2c63ec6058467b85ffb42fcp1@ENST00000458250
3.08e-40FFCP PHASE2:Hg19::chr1:209602671..209602695,+#_533400f4f2c63ec6058467b85ffb42fcp1@ENST00000458250
3.29e-40FFCP PHASE2:Mm9::chr7:107413155..107413177,+#_f37c23bd4f97ddb3d14a27475af57ffep1@Gpx2-ps1
3.29e-40FFCP PHASE1:Mm9::chr7:107413155..107413177,+#_f37c23bd4f97ddb3d14a27475af57ffep1@Gpx2-ps1
5.71e-40FFCP PHASE2:Hg19::chr17:39942268..39942282,-#_a021d3be31e3e2be80dad217ce1bbcd8p6@JUP
5.71e-40FFCP PHASE1:Hg19::chr17:39942268..39942282,-#_a021d3be31e3e2be80dad217ce1bbcd8p6@JUP
6.87e-40FFCP PHASE2:Hg19::chr11:72432950..72432974,-#_51ca60bd0336ff3ed8a6a7638becff25p9@ARAP1
6.87e-40FFCP PHASE1:Hg19::chr11:72432950..72432974,-#_51ca60bd0336ff3ed8a6a7638becff25p9@ARAP1
8.62e-40FFCP PHASE2:Hg19::chr15:40532837..40532851,+#_5048c6a3005885c6c3cce02740b46355p8@PAK6
8.62e-40FFCP PHASE1:Hg19::chr15:40532837..40532851,+#_5048c6a3005885c6c3cce02740b46355p8@PAK6
1.12e-39FFCP PHASE2:Hg19::chr2:167041528..167041552,+#_5577f122e80ef16688bcba364d4cc2f5p1@BC029452
1.12e-39FFCP PHASE1:Hg19::chr2:167041528..167041552,+#_5577f122e80ef16688bcba364d4cc2f5p1@BC029452
2.16e-39FFCP PHASE2:Hg19::chr6:150346656..150346674,-#_f88b37642d00d1dda747089f340b6f48p1@RAET1L
2.16e-39FFCP PHASE1:Hg19::chr6:150346656..150346674,-#_f88b37642d00d1dda747089f340b6f48p1@RAET1L
2.66e-39FFCP PHASE2:Hg19::chr1:209979375..209979386,-#_d9a80c3f19e76c7fccfbadf7b1646827p4@IRF6
2.66e-39FFCP PHASE1:Hg19::chr1:209979375..209979386,-#_d9a80c3f19e76c7fccfbadf7b1646827p4@IRF6
4.52e-39FFCP PHASE1:Hg19::chr16:68679261..68679268,+#_8636f9cbe08c78e0dbb210243219fc94p3@CDH3
4.52e-39FFCP PHASE2:Hg19::chr16:68679261..68679268,+#_8636f9cbe08c78e0dbb210243219fc94p3@CDH3
6.24e-39FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_46be5c5943dc3f17cbd6f3b6011b47cdp@chr3:122215917..122215967, -
6.24e-39FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_46be5c5943dc3f17cbd6f3b6011b47cdp@chr3:122215917..122215967, -
7.01e-39FFCP PHASE2:Hg19::chr3:189507523..189507535,+#_88aa4b830e6d1113ebb425c066e9bfcap5@TP63
7.01e-39FFCP PHASE1:Hg19::chr3:189507523..189507535,+#_88aa4b830e6d1113ebb425c066e9bfcap5@TP63
8.61e-39FFCP PHASE1:Hg19::chr11:72432903..72432945,-#_12e9586679ef782dedd3f890eadde783p7@ARAP1
8.61e-39FFCP PHASE2:Hg19::chr11:72432903..72432945,-#_12e9586679ef782dedd3f890eadde783p7@ARAP1
9.06e-39FFCP PHASE2:Hg19::chr4:15939984..15939995,-#_6ad083ad6557efc2ab210732d79e45abp2@FGFBP1
9.06e-39FFCP PHASE1:Hg19::chr4:15939984..15939995,-#_6ad083ad6557efc2ab210732d79e45abp2@FGFBP1
9.27e-39FFCP PHASE2:Hg19::chr3:189507460..189507471,+#_a9646354a04302d1831fd94a8811c1f4p3@TP63
9.27e-39FFCP PHASE1:Hg19::chr3:189507460..189507471,+#_a9646354a04302d1831fd94a8811c1f4p3@TP63
9.3e-39FFCP PHASE2:Hg19::chr12:52913784..52913810,+#_5bbb7e042c02543ff0bf16e85b5a7fc4p@chr12:52913784..52913810, +
9.3e-39FFCP PHASE1:Hg19::chr12:52913784..52913810,+#_5bbb7e042c02543ff0bf16e85b5a7fc4p@chr12:52913784..52913810, +
9.38e-39FFCP PHASE2:Mm9::chr2:143738263..143738267,+#_57d19cb05fd5934c4b457b04546942bap@chr2:143738263..143738267, +
9.38e-39FFCP PHASE1:Mm9::chr2:143738263..143738267,+#_57d19cb05fd5934c4b457b04546942bap@chr2:143738263..143738267, +
9.42e-39FFCP PHASE1:Mm9::chr5:135442713..135442733,+#_e10ecc1b245d0cb91c96462b60446302p@chr5:135442713..135442733, +
9.42e-39FFCP PHASE2:Mm9::chr5:135442713..135442733,+#_e10ecc1b245d0cb91c96462b60446302p@chr5:135442713..135442733, +
9.59e-39FFCP PHASE1:Hg19::chr4:3388057..3388075,+#_486335716d35a0bb021342ce871e5a37p9@RGS12
9.59e-39FFCP PHASE2:Hg19::chr4:3388057..3388075,+#_486335716d35a0bb021342ce871e5a37p9@RGS12
1.18e-38FFCP PHASE2:Hg19::chr1:200864071..200864088,+#_35b42a796a1585ae71628e0040fd8e74p3@C1orf106
1.18e-38FFCP PHASE1:Hg19::chr1:200864071..200864088,+#_35b42a796a1585ae71628e0040fd8e74p3@C1orf106
1.62e-38FFCP PHASE2:Hg19::chr1:24646263..24646277,+#_5bb5b2e81d3a0dd1401990eeba1785a5p4@GRHL3
1.62e-38FFCP PHASE1:Hg19::chr1:24646263..24646277,+#_5bb5b2e81d3a0dd1401990eeba1785a5p4@GRHL3
1.92e-38FFCP PHASE2:Hg19::chr3:189586378..189586390,+#_3d45a7e398ee7aa2127e3d6e48c5c890p@chr3:189586378..189586390, +
1.92e-38FFCP PHASE1:Hg19::chr3:189586378..189586390,+#_3d45a7e398ee7aa2127e3d6e48c5c890p@chr3:189586378..189586390, +
2.14e-38FFCP PHASE2:Hg19::chr19:45281245..45281260,+#_a2528fd57dcfe004bd16ec5f3717210ap1@CU688574
2.14e-38FFCP PHASE1:Hg19::chr19:45281245..45281260,+#_a2528fd57dcfe004bd16ec5f3717210ap1@CU688574
2.9e-38FFCP PHASE2:Hg19::chr1:209827500..209827512,-#_c01830c2322de2c2c2f1cf7570de8ee6p@chr1:209827500..209827512, -
2.9e-38FFCP PHASE1:Hg19::chr1:209827500..209827512,-#_c01830c2322de2c2c2f1cf7570de8ee6p@chr1:209827500..209827512, -
3.76e-38FFCP PHASE2:Hg19::chr17:39741249..39741272,-#_259c9f829d79f6a301ce2dd2e3987107p@chr17:39741249..39741272, -
3.76e-38FFCP PHASE1:Hg19::chr17:39741249..39741272,-#_259c9f829d79f6a301ce2dd2e3987107p@chr17:39741249..39741272, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002076&oldid=3275407"