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{{CL
{{CL
|id=CL:0002304
|alt_id=
|name=non-pigmented ciliary epithelial cell
|namespace=cell
|def="A multi-ciliated cell of the retina that lacks visual pigment and contributes to aqueous humor by secreting chloride ions. This cell type maintains gap junctions with pigmented epithelial cells." [GOC:tfm, PMID:15106942]
|xref=FMA:70607
|is_a=CL:0000710;;CL:0005012
|synonym="NPE" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-09-13T04:09:31Z
|def="A multi-ciliated cell of the retina that lacks visual pigment and contributes to aqueous humor by secreting chloride ions. This cell type maintains gap junctions with pigmented epithelial cells." [GOC:tfm, PMID:15106942]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002304
|is_a=CL:0000067 ;;CL:0000710 ;;CL:0005012
|is_obsolete=
|located_in=
|located_in=
|name=non-pigmented ciliary epithelial cell
|namespace=FANTOM
|obo_creation_date=2010-09-13T04:09:31Z
|part_of=UBERON:0001778
|part_of=UBERON:0001778
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="NPE" EXACT []
|union_of=
|xref=FMA:70607
}}
}}

Latest revision as of 16:41, 12 September 2014

Name:non-pigmented ciliary epithelial cell
Namespace:FANTOM
Definition:"A multi-ciliated cell of the retina that lacks visual pigment and contributes to aqueous humor by secreting chloride ions. This cell type maintains gap junctions with pigmented epithelial cells." [GOC:tfm, PMID:15106942]
Xrefs:
links:
FMA:70607
Synonyms: "NPE" EXACT []
Created by:tmeehan
Creation date:2010-09-13T04:09:31Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000067(ciliated epithelial cell),CL:0000710(neurecto-epithelial cell),CL:0005012(multi-ciliated epithelial cell)
part_of:UBERON:0001778(ciliary epithelium)



Children


derives from:FF:0000040 (human ciliary epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002304 (non-pigmented ciliary epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.93e-147FFCP PHASE1:Hg19::chr12:97856211..97856221,+#_8184d99d61026a7744e8061a0588073cp@chr12:97856211..97856221, +
8.93e-147FFCP PHASE2:Hg19::chr12:97856211..97856221,+#_8184d99d61026a7744e8061a0588073cp@chr12:97856211..97856221, +
7.78e-118FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_cd80e70ecbbe585f4ea23f352b853c0bp@chr13:36052762..36052767, -
7.78e-118FFCP PHASE1:Hg19::chr8:41119800..41119811,-#_cd80e70ecbbe585f4ea23f352b853c0bp5@SFRP1
7.78e-118FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_cd80e70ecbbe585f4ea23f352b853c0bp@chr13:36052762..36052767, -
7.78e-118FFCP PHASE2:Hg19::chr8:41119800..41119811,-#_cd80e70ecbbe585f4ea23f352b853c0bp5@SFRP1
2.59e-117FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_50033488cd35d3cb90b108e102acc412p@chr16:58896129..58896134, -
2.59e-117FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_50033488cd35d3cb90b108e102acc412p@chrX:106198807..106198826, -
2.59e-117FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_50033488cd35d3cb90b108e102acc412p@chrX:106198807..106198826, -
2.59e-117FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_50033488cd35d3cb90b108e102acc412p@chr16:58896129..58896134, -
4.06e-99FFCP PHASE1:Hg19::chr14:61654180..61654191,+#_243e349779dccee30d736c6ef0249f9fp33@PRKCH
4.06e-99FFCP PHASE2:Hg19::chr14:61654180..61654191,+#_243e349779dccee30d736c6ef0249f9fp33@PRKCH
1.55e-98FFCP PHASE1:Hg19::chrX:106146585..106146594,-#_97b215a885eb09efd15b51a8d5446d09p2@RIPPLY1
1.55e-98FFCP PHASE2:Hg19::chrX:106146585..106146594,-#_97b215a885eb09efd15b51a8d5446d09p2@RIPPLY1
6.24e-88FFCP PHASE1:Hg19::chr2:210798666..210798677,+#_8aa09d076864b1e0f981b6bf59a2548ap@chr2:210798666..210798677, +
6.24e-88FFCP PHASE2:Hg19::chr2:210798666..210798677,+#_8aa09d076864b1e0f981b6bf59a2548ap@chr2:210798666..210798677, +
1.52e-87FFCP PHASE1:Hg19::chr13:36052713..36052724,-#_9ad53be5b2696622b3f51f48035547e4p@chr13:36052713..36052724, -
1.52e-87FFCP PHASE2:Hg19::chr13:36052713..36052724,-#_9ad53be5b2696622b3f51f48035547e4p@chr13:36052713..36052724, -
4.06e-85FFCP PHASE1:Hg19::chr11:27240276..27240289,-#_248f96cd241f117204312c5f6e9cc9ccp1@ENST00000526061
4.06e-85FFCP PHASE2:Hg19::chr11:27240276..27240289,-#_248f96cd241f117204312c5f6e9cc9ccp1@ENST00000526061
9.61e-85FFCP PHASE1:Hg19::chr10:91294399..91294401,-#_a39204efccbc72380ff4dbefd6d23951p@chr10:91294399..91294401, -
9.61e-85FFCP PHASE2:Hg19::chr10:91294399..91294401,-#_a39204efccbc72380ff4dbefd6d23951p@chr10:91294399..91294401, -
1.28e-84FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_1e7e0a04362c2d39d7ca9aa3971881f7p1@BC033145
1.28e-84FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_1e7e0a04362c2d39d7ca9aa3971881f7p1@BC033145
4.72e-75FFCP PHASE1:Hg19::chr2:45166478..45166502,-#_d66881573e3fc68191a1ac9dfd654e10p3@ENST00000437916
4.72e-75FFCP PHASE2:Hg19::chr2:45166478..45166502,-#_d66881573e3fc68191a1ac9dfd654e10p3@ENST00000437916
1.66e-74FFCP PHASE1:Hg19::chr8:94713146..94713159,+#_cd54d011bcaa386bcc71995a52b655dfp8@FAM92A1
1.66e-74FFCP PHASE2:Hg19::chr8:94713146..94713159,+#_cd54d011bcaa386bcc71995a52b655dfp8@FAM92A1
2.75e-74FFCP PHASE2:Hg19::chr4:183006122..183006131,-#_850b72408e42196574b92069b042c30dp3@ENST00000505537
2.75e-74FFCP PHASE1:Hg19::chr4:183006122..183006131,-#_850b72408e42196574b92069b042c30dp3@ENST00000505537
7.85e-67FFCP PHASE1:Hg19::chr3:110846331..110846333,+#_12112cac98dc75bdc14babc104ea2dd5p@chr3:110846331..110846333, +
7.85e-67FFCP PHASE2:Hg19::chr3:110846331..110846333,+#_12112cac98dc75bdc14babc104ea2dd5p@chr3:110846331..110846333, +
9.82e-67FFCP PHASE2:Hg19::chr2:237677787..237677800,+#_fca034072a5e6b17e04cc57a37701603p@chr2:237677787..237677800, +
9.82e-67FFCP PHASE1:Hg19::chr2:237677787..237677800,+#_fca034072a5e6b17e04cc57a37701603p@chr2:237677787..237677800, +
1.54e-66FFCP PHASE1:Hg19::chr11:89224826..89224839,-#_5856f47e99a8a17e2d9ea13afcc3cad5p14@NOX4
1.54e-66FFCP PHASE2:Hg19::chr11:89224826..89224839,-#_5856f47e99a8a17e2d9ea13afcc3cad5p14@NOX4
1.71e-66FFCP PHASE1:Hg19::chr1:218579326..218579337,+#_471b078a1c44c4c0ba305081421e8044p@chr1:218579326..218579337, +
1.71e-66FFCP PHASE2:Hg19::chr1:218579326..218579337,+#_471b078a1c44c4c0ba305081421e8044p@chr1:218579326..218579337, +
2.39e-66FFCP PHASE2:Hg19::chr2:63196015..63196016,+#_a7f0f53dbac0130af80f95418970ddbdp@chr2:63196015..63196016, +
2.39e-66FFCP PHASE2:Hg19::chr19:30716539..30716546,+#_a7f0f53dbac0130af80f95418970ddbdp@chr19:30716539..30716546, +
2.39e-66FFCP PHASE1:Hg19::chr2:63196015..63196016,+#_a7f0f53dbac0130af80f95418970ddbdp@chr2:63196015..63196016, +
2.39e-66FFCP PHASE1:Hg19::chr19:30716539..30716546,+#_a7f0f53dbac0130af80f95418970ddbdp@chr19:30716539..30716546, +
2.4e-66FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_46d8e49f2ba811425e829a8382912c6ep@chr7:115723897..115723915, -
2.4e-66FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_46d8e49f2ba811425e829a8382912c6ep@chr7:115723897..115723915, -
2.41e-66FFCP PHASE1:Hg19::chr3:139258648..139258667,+#_2626135cfc3973404057d936967656aap1@ENST00000381790
2.41e-66FFCP PHASE2:Hg19::chr3:139258648..139258667,+#_2626135cfc3973404057d936967656aap1@ENST00000381790
3.35e-66FFCP PHASE1:Hg19::chr15:79501729..79501736,+#_28b8d26f5e6b1a9f3044eb351db414ffp1@MIR184
3.35e-66FFCP PHASE2:Hg19::chr15:79501729..79501736,+#_28b8d26f5e6b1a9f3044eb351db414ffp1@MIR184
4.68e-66FFCP PHASE1:Hg19::chr3:50191610..50191612,-#_c2adc09eb898ba704c976b2d0dc4639dp@chr3:50191610..50191612, -
4.68e-66FFCP PHASE2:Hg19::chr3:50191610..50191612,-#_c2adc09eb898ba704c976b2d0dc4639dp@chr3:50191610..50191612, -
6.53e-66FFCP PHASE1:Hg19::chrX:106142727..106142730,-#_8dd3c90200b5fc5886cfca8e03a258c1p@chrX:106142727..106142730, -
6.53e-66FFCP PHASE1:Hg19::chr1:12416343..12416350,+#_8dd3c90200b5fc5886cfca8e03a258c1p@chr1:12416343..12416350, +
6.53e-66FFCP PHASE2:Hg19::chrX:106142727..106142730,-#_8dd3c90200b5fc5886cfca8e03a258c1p@chrX:106142727..106142730, -
6.53e-66FFCP PHASE2:Hg19::chr1:12416343..12416350,+#_8dd3c90200b5fc5886cfca8e03a258c1p@chr1:12416343..12416350, +
2.43e-60FFCP PHASE1:Hg19::chr5:31235359..31235362,+#_8ead782320e4fc69206a8c5a62735710p@chr5:31235359..31235362, +
2.43e-60FFCP PHASE2:Hg19::chr5:31235359..31235362,+#_8ead782320e4fc69206a8c5a62735710p@chr5:31235359..31235362, +
8.17e-60FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_f4fd2f13d649d2cf0dd6ec22a6ba5337p1@CLRN1
8.17e-60FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_f4fd2f13d649d2cf0dd6ec22a6ba5337p1@CLRN1
2.73e-59FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_8027d81a78da4865c3ac955a73b4f34cp@chr8:124692287..124692298, +
2.73e-59FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_8027d81a78da4865c3ac955a73b4f34cp@chr8:124692287..124692298, +
2.4e-55FFCP PHASE1:Hg19::chr3:110888243..110888248,+#_2ea0909ef635cd847b35da47fc5b3018p@chr3:110888243..110888248, +
2.4e-55FFCP PHASE2:Hg19::chr3:110888243..110888248,+#_2ea0909ef635cd847b35da47fc5b3018p@chr3:110888243..110888248, +
2.4e-55FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_2ea0909ef635cd847b35da47fc5b3018p30@PRKCH
2.4e-55FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_2ea0909ef635cd847b35da47fc5b3018p30@PRKCH
7.24e-55FFCP PHASE1:Hg19::chr14:60975914..60975925,+#_9b3512d60cb401e4b95530e43f39d578p5@SIX6
7.24e-55FFCP PHASE2:Hg19::chr14:60975914..60975925,+#_9b3512d60cb401e4b95530e43f39d578p5@SIX6
1.25e-54FFCP PHASE1:Hg19::chr14:60981789..60981803,+#_9bb1b8697cd7266203da454f0ac64b28p1@ENST00000557618
1.25e-54FFCP PHASE2:Hg19::chr14:60981789..60981803,+#_9bb1b8697cd7266203da454f0ac64b28p1@ENST00000557618
3.76e-54FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_0fa22a387ebb096e4b3d614d40300ad4p1@ENST00000456467
3.76e-54FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_0fa22a387ebb096e4b3d614d40300ad4p1@ENST00000456467
1.68e-53FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_358ce03060be933824d406fb2dd153afp@chr7:115723925..115723935, -
1.68e-53FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_358ce03060be933824d406fb2dd153afp@chr7:115723925..115723935, -
2.87e-53FFCP PHASE2:Hg19::chr11:31671561..31671580,+#_5c1eeba354b1e4377fea2a214f5611dap@chr11:31671561..31671580, +
2.87e-53FFCP PHASE1:Hg19::chr4:169623845..169623853,+#_5c1eeba354b1e4377fea2a214f5611dap@chr4:169623845..169623853, +
2.87e-53FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_5c1eeba354b1e4377fea2a214f5611dap@chr2:35680607..35680613, -
2.87e-53FFCP PHASE2:Hg19::chr4:169623845..169623853,+#_5c1eeba354b1e4377fea2a214f5611dap@chr4:169623845..169623853, +
2.87e-53FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_5c1eeba354b1e4377fea2a214f5611dap@chr2:35680607..35680613, -
2.87e-53FFCP PHASE1:Hg19::chr11:31671561..31671580,+#_5c1eeba354b1e4377fea2a214f5611dap@chr11:31671561..31671580, +
6.39e-53FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_1a21e1623f31f741843f3a1924010c29p@chr7:131803806..131803815, +
6.39e-53FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_1a21e1623f31f741843f3a1924010c29p@chr7:131803806..131803815, +
1.14e-50FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_b75d258c8a4f90f1561d9763d81edd9ap7@PTPRU
1.14e-50FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_b75d258c8a4f90f1561d9763d81edd9ap7@PTPRU
1.89e-50FFCP PHASE2:Hg19::chr13:94028319..94028321,+#_9d91a5f64eeb99a7be870be6507df9acp@chr13:94028319..94028321, +
1.89e-50FFCP PHASE1:Hg19::chr13:94028319..94028321,+#_9d91a5f64eeb99a7be870be6507df9acp@chr13:94028319..94028321, +
4.05e-47FFCP PHASE1:Hg19::chr10:103990396..103990405,+#_886392a5d4cbd5bbff58b1557968872bp@chr10:103990396..103990405, +
4.05e-47FFCP PHASE1:Hg19::chr2:66670833..66670853,+#_886392a5d4cbd5bbff58b1557968872bp@chr2:66670833..66670853, +
4.05e-47FFCP PHASE1:Hg19::chr11:2973356..2973367,-#_886392a5d4cbd5bbff58b1557968872bp11@NAP1L4
4.05e-47FFCP PHASE2:Hg19::chr10:103990396..103990405,+#_886392a5d4cbd5bbff58b1557968872bp@chr10:103990396..103990405, +
4.05e-47FFCP PHASE2:Hg19::chr2:66670833..66670853,+#_886392a5d4cbd5bbff58b1557968872bp@chr2:66670833..66670853, +
4.05e-47FFCP PHASE2:Hg19::chr11:2973356..2973367,-#_886392a5d4cbd5bbff58b1557968872bp11@NAP1L4
8.84e-47FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_c35b13b56332fe925ac9cea617d57907p1@RIPPLY1
8.84e-47FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_c35b13b56332fe925ac9cea617d57907p1@RIPPLY1
8.84e-47FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_c35b13b56332fe925ac9cea617d57907p3@SIX6
8.84e-47FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_c35b13b56332fe925ac9cea617d57907p3@SIX6
1.21e-46FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_9539ed97f622ada28278cdff8ee2cb5ep4@SIX6
1.21e-46FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_9539ed97f622ada28278cdff8ee2cb5ep4@SIX6
1.21e-46FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_9539ed97f622ada28278cdff8ee2cb5ep1@OPTC
1.21e-46FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_9539ed97f622ada28278cdff8ee2cb5ep1@OPTC
4.17e-46FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_afeb2fe8dd60bf09f87c2f530b357712p8@NBEA
4.17e-46FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_afeb2fe8dd60bf09f87c2f530b357712p8@NBEA

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