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{{CL
{{CL
|id=CL:0002306
|alt_id=
|name=epithelial cell of proximal tubule
|namespace=cell
|def="An epithelial cell of the proximal tubule of the kidney." [GOC:tfm, ISBN:1-4160-2328-3]
|xref=FMA:62125;;FMA:70973;;KUPO:0001044
|is_a=CL:0000239;;CL:0002078;;CL:1000615
|synonym="kidney proximal tubule epithelial cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelial cell of the proximal tubule of the kidney." [GOC:tfm, ISBN:1-4160-2328-3]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002306
|is_a=CL:0000239 ;;CL:0002078 ;;CL:1000615
|is_obsolete=
|located_in=
|located_in=
|name=epithelial cell of proximal tubule
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004134
|part_of=UBERON:0004134
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="kidney proximal tubule epithelial cell" EXACT []
|union_of=
|xref=FMA:62125;;FMA:70973;;KUPO:0001044
}}
}}

Latest revision as of 16:41, 12 September 2014

Name:epithelial cell of proximal tubule
Namespace:FANTOM
Definition:"An epithelial cell of the proximal tubule of the kidney." [GOC:tfm, ISBN:1-4160-2328-3]
Xrefs:
links:

FMA:62125
FMA:70973

KUPO:0001044
Synonyms: "kidney proximal tubule epithelial cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000239(brush border epithelial cell),CL:0002078(meso-epithelial cell),CL:1000615(kidney cortex tubule cell)
part_of:UBERON:0004134(proximal tubule)



Children


derives from:FF:0000155 (human renal proximal tubular epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)

Mouse (Mus musculus)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002306 (epithelial cell of proximal tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_070083c2c09490497baf71e6363a8e5ep10@WWC1
8.98e-131FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_070083c2c09490497baf71e6363a8e5ep10@WWC1
1.01e-74FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_63aea17744b83e2a21fcd895e708808cp39@WWTR1
1.01e-74FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_63aea17744b83e2a21fcd895e708808cp39@WWTR1
1.24e-73FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_9d82f414a53d87d4e66ef6447b83c6a0p1@ENST00000491264
1.24e-73FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_9d82f414a53d87d4e66ef6447b83c6a0p1@ENST00000491264
2.39e-66FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_0ce88925b116fee54578f963f1d860edp@chr8:6614884..6614885, +
2.39e-66FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_0ce88925b116fee54578f963f1d860edp@chr3:123667850..123667851, +
2.39e-66FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_0ce88925b116fee54578f963f1d860edp@chr8:6614884..6614885, +
2.39e-66FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_0ce88925b116fee54578f963f1d860edp@chr16:61687533..61687551, -
2.39e-66FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_0ce88925b116fee54578f963f1d860edp@chr16:61687533..61687551, -
2.39e-66FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_0ce88925b116fee54578f963f1d860edp@chr3:123667850..123667851, +
2.39e-66FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_0ce88925b116fee54578f963f1d860edp@chr16:62055187..62055188, +
2.39e-66FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_0ce88925b116fee54578f963f1d860edp@chr16:62055187..62055188, +
1.22e-59FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_07a25621bacc4bda87e39a6091eb9defp4@MEGF11
1.22e-59FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_07a25621bacc4bda87e39a6091eb9defp4@MEGF11
3.75e-53FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_0606a773ff1d9cd90abec06853cddfc5p@chr9:114828174..114828179, +
3.75e-53FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_0606a773ff1d9cd90abec06853cddfc5p@chr9:114828174..114828179, +
1.65e-46FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_f25fc69358b6a563540fc2a3d6d99eabp@chr7:140227349..140227360, -
1.65e-46FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_f25fc69358b6a563540fc2a3d6d99eabp@chr7:140227349..140227360, -
7.81e-45FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_7db05200e154192456f8abe660d49277p9@VARS2
7.81e-45FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_7db05200e154192456f8abe660d49277p9@VARS2
6.91e-39FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_363f58ddd56cc7a1977ec78fd7c98e53p11@VARS2
6.91e-39FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_363f58ddd56cc7a1977ec78fd7c98e53p11@VARS2
1.49e-38FFCP PHASE1:Hg19::chr11:33718564..33718585,-#_0ed3539d7048387a91afbaa3e813def0p1@ENST00000534431
1.49e-38FFCP PHASE2:Hg19::chr11:33718564..33718585,-#_0ed3539d7048387a91afbaa3e813def0p1@ENST00000534431
2.64e-38FFCP PHASE2:Hg19::chr7:53466339..53466356,-#_33646693557353713012cb0cfb231a83p@chr7:53466339..53466356, -
2.64e-38FFCP PHASE1:Hg19::chr7:53466339..53466356,-#_33646693557353713012cb0cfb231a83p@chr7:53466339..53466356, -
3.48e-38FFCP PHASE1:Hg19::chr17:18160552..18160565,-#_1e9c23203d1b4a636f5fcded3d53cd95p@chr17:18160552..18160565, -
3.48e-38FFCP PHASE2:Hg19::chr17:18160552..18160565,-#_1e9c23203d1b4a636f5fcded3d53cd95p@chr17:18160552..18160565, -
3.86e-38FFCP PHASE2:Hg19::chr3:190105820..190105829,+#_33d4c902de9a59a463e3e0b737c08332p3@CLDN16
3.86e-38FFCP PHASE1:Hg19::chr3:190105820..190105829,+#_33d4c902de9a59a463e3e0b737c08332p3@CLDN16
5.76e-38FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_563eb77dc64953a03305c6d64d4d3029p@chr1:1100457..1100470, +
5.76e-38FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_563eb77dc64953a03305c6d64d4d3029p@chr1:1100457..1100470, +
2.08e-36FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_f23856de3ad92c840a02f6e228966891p4@AIF1L
2.08e-36FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_f23856de3ad92c840a02f6e228966891p4@AIF1L
2.25e-35FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_1d14af0c09c69c2e083942cf397b5709p4@PAX2
2.25e-35FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_1d14af0c09c69c2e083942cf397b5709p4@PAX2
3.2e-35FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_1b749a3423cceac3e2bb04bdee996ae9p18@SCNN1A
3.2e-35FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_1b749a3423cceac3e2bb04bdee996ae9p18@SCNN1A
5.96e-34FFCP PHASE2:Hg19::chr6:31023284..31023287,-#_081b7d1b32adcbcd4c6fde4707f8afd5p@chr6:31023284..31023287, -
5.96e-34FFCP PHASE1:Hg19::chr6:31023284..31023287,-#_081b7d1b32adcbcd4c6fde4707f8afd5p@chr6:31023284..31023287, -
2.09e-33FFCP PHASE2:Hg19::chr2:113994209..113994222,-#_aa8130b272117ea19b18cc7ca76efa19p11@PAX8
2.09e-33FFCP PHASE1:Hg19::chr2:113994209..113994222,-#_aa8130b272117ea19b18cc7ca76efa19p11@PAX8
1.41e-32FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_1f4f03965f8da919a1287785fdbd9b08p2@C14orf105
1.41e-32FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_1f4f03965f8da919a1287785fdbd9b08p2@C14orf105
2.17e-32FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_19e67eda8d07770660e1aef1a19d7a35p1@CLDN16
2.17e-32FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_19e67eda8d07770660e1aef1a19d7a35p1@CLDN16
3.1e-30FFCP PHASE1:Hg19::chr3:112127710..112127713,-#_65f329c9ce0f65072f2d9204e2826496p@chr3:112127710..112127713, -
3.1e-30FFCP PHASE2:Hg19::chr3:112127710..112127713,-#_65f329c9ce0f65072f2d9204e2826496p@chr3:112127710..112127713, -
4.84e-30FFCP PHASE1:Hg19::chr20:49347516..49347535,-#_967823544e4152f149934d5c1e6e0628p@chr20:49347516..49347535, -
4.84e-30FFCP PHASE2:Hg19::chr20:49347516..49347535,-#_967823544e4152f149934d5c1e6e0628p@chr20:49347516..49347535, -
6.17e-30FFCP PHASE1:Hg19::chr6:30890348..30890372,+#_668e70f9fcf7a006778b2603ffee16a4p5@VARS2
6.17e-30FFCP PHASE2:Hg19::chr6:30890348..30890372,+#_668e70f9fcf7a006778b2603ffee16a4p5@VARS2
8.26e-30FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_e10735510cbd7779b4ed6aa0b18851c6p3@AIF1L
8.26e-30FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_e10735510cbd7779b4ed6aa0b18851c6p3@AIF1L
8.74e-30FFCP PHASE1:Hg19::chr3:190106002..190106011,+#_b4f57100dba35d08bf2ff8d4f868ef34p4@CLDN16
8.74e-30FFCP PHASE2:Hg19::chr3:190106002..190106011,+#_b4f57100dba35d08bf2ff8d4f868ef34p4@CLDN16
4.28e-29FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_69cd2656cee6685454cb4eea45b3ad4fp@chr7:7606139..7606151, -
4.28e-29FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_69cd2656cee6685454cb4eea45b3ad4fp@chr7:7606139..7606151, -
5.09e-29FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_675a31a29580312183e92276fd021839p4@VARS2
5.09e-29FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_675a31a29580312183e92276fd021839p4@VARS2
4.74e-28FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_4ad1de87c7229ea3013fe86e25ac769bp7@FXYD2
4.74e-28FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_4ad1de87c7229ea3013fe86e25ac769bp7@FXYD2
2.38e-27FFCP PHASE2:Hg19::chr11:117695233..117695244,-#_ef99cbf3c466eca6bde98cd667284b01p11@FXYD2
2.38e-27FFCP PHASE1:Hg19::chr11:117695233..117695244,-#_ef99cbf3c466eca6bde98cd667284b01p11@FXYD2
3.11e-27FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_56e07e9039e5d3345bc33393646183bcp2@ENST00000354541
3.11e-27FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_56e07e9039e5d3345bc33393646183bcp2@ENST00000354541
5.07e-27FFCP PHASE2:Hg19::chr1:17519128..17519138,+#_07bd7f7c2c5f924d6e442316183a5c6cp@chr1:17519128..17519138, +
5.07e-27FFCP PHASE1:Hg19::chr1:17519128..17519138,+#_07bd7f7c2c5f924d6e442316183a5c6cp@chr1:17519128..17519138, +
1.22e-26FFCP PHASE1:Hg19::chr18:77104123..77104150,+#_cb9a8e278e7697b67efe4324fee5d8b4p5@ATP9B
1.22e-26FFCP PHASE2:Hg19::chr18:77104123..77104150,+#_cb9a8e278e7697b67efe4324fee5d8b4p5@ATP9B
2.01e-25FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_f9c4d82e4c0e913b570a1edce0880767p@chr7:98453821..98453843, -
2.01e-25FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_f9c4d82e4c0e913b570a1edce0880767p@chr7:98453821..98453843, -
4.31e-25FFCP PHASE2:Hg19::chr2:167467988..167467993,-#_fd06a8b12e19d20ff9ab989800c0e534p@chr2:167467988..167467993, -
4.31e-25FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_fd06a8b12e19d20ff9ab989800c0e534p7@AIF1L
4.31e-25FFCP PHASE1:Hg19::chr2:167467988..167467993,-#_fd06a8b12e19d20ff9ab989800c0e534p@chr2:167467988..167467993, -
4.31e-25FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_fd06a8b12e19d20ff9ab989800c0e534p7@AIF1L
5.5e-25FFCP PHASE1:Hg19::chr2:189157368..189157381,-#_f1dd03102c0879b83096076d0c90fbdcp@chr2:189157368..189157381, -
5.5e-25FFCP PHASE2:Hg19::chr2:189157368..189157381,-#_f1dd03102c0879b83096076d0c90fbdcp@chr2:189157368..189157381, -
7.93e-25FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_2925e035c78d7bfa048cba26030c1cdcp@chr9:119741711..119741743, -
7.93e-25FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_2925e035c78d7bfa048cba26030c1cdcp@chr9:119741711..119741743, -
8.07e-25FFCP PHASE2:Hg19::chr19:51472081..51472088,-#_e547b16a3a3ffe8d9df1633f759dca95p8@KLK6
8.07e-25FFCP PHASE1:Hg19::chr19:51472081..51472088,-#_e547b16a3a3ffe8d9df1633f759dca95p8@KLK6
1.21e-24FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_37596bb6354fd0930b8b1b6f8197ed01p7@HOXA10
1.21e-24FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_37596bb6354fd0930b8b1b6f8197ed01p7@HOXA10
1.29e-24FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_d6ddb676f2436c34b70ff16a30db4c2ep@chr20:6034241..6034256, -
1.29e-24FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_d6ddb676f2436c34b70ff16a30db4c2ep@chr20:6034241..6034256, -
7.91e-24FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_2eb7c49ce364cef5841f679cc30b64c1p3@FXYD2
7.91e-24FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_2eb7c49ce364cef5841f679cc30b64c1p2@B3GALT5
7.91e-24FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_2eb7c49ce364cef5841f679cc30b64c1p3@FXYD2
7.91e-24FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_2eb7c49ce364cef5841f679cc30b64c1p2@B3GALT5
9.99e-24FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_b413e03daee294bd338c6e3b659df342p3@PAX2
9.99e-24FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_b413e03daee294bd338c6e3b659df342p@chr18:3456189..3456200, +
9.99e-24FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_b413e03daee294bd338c6e3b659df342p3@PAX2
9.99e-24FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_b413e03daee294bd338c6e3b659df342p@chr18:3456189..3456200, +
3.27e-23FFCP PHASE2:Hg19::chr12:6484832..6484841,+#_7e93b10d1349e4068c6938b65c8b3dc9p@chr12:6484832..6484841, +
3.27e-23FFCP PHASE1:Hg19::chr12:6484832..6484841,+#_7e93b10d1349e4068c6938b65c8b3dc9p@chr12:6484832..6484841, +
3.29e-23FFCP PHASE2:Hg19::chr3:43532224..43532252,-#_dbb82708653144b94d6f291593aec326p@chr3:43532224..43532252, -
3.29e-23FFCP PHASE1:Hg19::chr3:43532224..43532252,-#_dbb82708653144b94d6f291593aec326p@chr3:43532224..43532252, -

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