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{{CL
{{CL
|id=CL:0002367
|alt_id=
|name=trabecular meshwork cell
|namespace=cell
|def="A cell that lines the trabecular meshwork, which is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). This cell may play a role in regulating intraocular pressure." [GOC:tfm, PMID:14500801]
|xref=
|is_a=CL:0000115
|synonym="trabeculocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-09-23T04:18:50Z
|def="A cell that lines the trabecular meshwork, which is an area of tissue in the��eye��located around the base of the��cornea, near the��ciliary body, and is responsible for draining the��aqueous humor��from the eye via the��anterior chamber��(the chamber on the front of the eye covered by the cornea). This cell may play a role in regulating intraocular pressure." [GOC:tfm, PMID:14500801]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002367
|is_a=CL:0000115
|is_obsolete=
|located_in=
|located_in=
|name=trabecular meshwork cell
|namespace=FANTOM
|obo_creation_date=2010-09-23T04:18:50Z
|part_of=UBERON:0005969
|part_of=UBERON:0005969
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="trabeculocyte" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:42, 12 September 2014

Name:trabecular meshwork cell
Namespace:FANTOM
Definition:"A cell that lines the trabecular meshwork, which is an area of tissue in the��eye��located around the base of the��cornea, near the��ciliary body, and is responsible for draining the��aqueous humor��from the eye via the��anterior chamber��(the chamber on the front of the eye covered by the cornea). This cell may play a role in regulating intraocular pressure." [GOC:tfm, PMID:14500801]
Synonyms: "trabeculocyte" EXACT []
Created by:tmeehan
Creation date:2010-09-23T04:18:50Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000115(endothelial cell)
part_of:UBERON:0005969(reticulum trabeculare)



Children


derives from:FF:0000188 (human trabecular meshwork cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002367 (trabecular meshwork cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.52e-50FFCP PHASE2:Hg19::chr4:111558887..111558892,-#_5a8edc84a318b2903ce313a4caf8dba8p14@PITX2
4.52e-50FFCP PHASE1:Hg19::chr4:111558887..111558892,-#_5a8edc84a318b2903ce313a4caf8dba8p14@PITX2
2.01e-40FFCP PHASE2:Hg19::chr6:105232902..105232908,-#_44169c723ea4c28dac5365c545449aeap8@HACE1
2.01e-40FFCP PHASE1:Hg19::chr6:105232902..105232908,-#_44169c723ea4c28dac5365c545449aeap8@HACE1
9.84e-37FFCP PHASE2:Hg19::chr19:10983098..10983110,+#_8e115855223e7d7ee8757e0bf86b0b85p@chr19:10983098..10983110, +
9.84e-37FFCP PHASE1:Hg19::chr19:10983098..10983110,+#_8e115855223e7d7ee8757e0bf86b0b85p@chr19:10983098..10983110, +
7.33e-32FFCP PHASE2:Hg19::chr6:50786479..50786490,+#_f3bcc032d2a88c39496041f8bcfb8f1dp6@TFAP2B
7.33e-32FFCP PHASE1:Hg19::chr6:50786479..50786490,+#_f3bcc032d2a88c39496041f8bcfb8f1dp6@TFAP2B
5.5e-31FFCP PHASE2:Hg19::chr4:111536662..111536674,-#_afacb0ce2ceb34ff65bfba590be472cfp3@ENST00000513690
5.5e-31FFCP PHASE1:Hg19::chr4:111536662..111536674,-#_afacb0ce2ceb34ff65bfba590be472cfp3@ENST00000513690
6.96e-30FFCP PHASE2:Hg19::chr3:129279438..129279448,-#_af22ea63efd1c5ecea3afc419cad0aacp17@PLXND1
6.96e-30FFCP PHASE1:Hg19::chr3:129279438..129279448,-#_af22ea63efd1c5ecea3afc419cad0aacp17@PLXND1
2.96e-29FFCP PHASE2:Hg19::chr6:50786631..50786635,+#_297cf22c6e0dcc88767677337aa54f08p11@TFAP2B
2.96e-29FFCP PHASE1:Hg19::chr6:50786631..50786635,+#_297cf22c6e0dcc88767677337aa54f08p11@TFAP2B
6.99e-29FFCP PHASE2:Hg19::chr1:153744081..153744096,+#_484f24029b45cb41d77d72254f2353cfp@chr1:153744081..153744096, +
6.99e-29FFCP PHASE1:Hg19::chr1:153744081..153744096,+#_484f24029b45cb41d77d72254f2353cfp@chr1:153744081..153744096, +
9.18e-26FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_aeaf73c8be1212d62cc4351ecf30859bp@chr11:61634768..61634777, +
9.18e-26FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_aeaf73c8be1212d62cc4351ecf30859bp@chr11:61634768..61634777, +
3.91e-25FFCP PHASE1:Hg19::chr6:50789737..50789746,+#_4d38f1fdcbe69b2e626f454e4c539da2p10@TFAP2B
3.91e-25FFCP PHASE2:Hg19::chr6:50789737..50789746,+#_4d38f1fdcbe69b2e626f454e4c539da2p10@TFAP2B
2.3e-22FFCP PHASE2:Hg19::chr8:60032478..60032492,+#_b10a6f66680495d8380b5cd0b049dc2ap2@ENST00000517898, p2@uc003xty.1
2.3e-22FFCP PHASE1:Hg19::chr8:60032478..60032492,+#_b10a6f66680495d8380b5cd0b049dc2ap2@ENST00000517898, p2@uc003xty.1
3.81e-21FFCP PHASE1:Hg19::chr6:41562324..41562340,+#_652a7fa8129054e7483761a2db983e1ep16@FOXP4
3.81e-21FFCP PHASE2:Hg19::chr6:41562324..41562340,+#_652a7fa8129054e7483761a2db983e1ep16@FOXP4
4.66e-21FFCP PHASE1:Hg19::chr11:61634723..61634731,+#_c93caa103ac6ce3285ffc5e35d65ba9ap@chr11:61634723..61634731, +
4.66e-21FFCP PHASE2:Hg19::chr11:61634723..61634731,+#_c93caa103ac6ce3285ffc5e35d65ba9ap@chr11:61634723..61634731, +
1.7e-19FFCP PHASE2:Hg19::chr19:11306638..11306657,-#_07b26f239b56cd431e351ea5c2924b47p13@KANK2
1.7e-19FFCP PHASE1:Hg19::chr19:11306638..11306657,-#_07b26f239b56cd431e351ea5c2924b47p13@KANK2
3.16e-18FFCP PHASE1:Hg19::chr6:78171774..78171792,+#_c25dcb4f8b0d7be95c6d0bf97322ec2ep@chr6:78171774..78171792, +
3.16e-18FFCP PHASE2:Hg19::chr6:78171774..78171792,+#_c25dcb4f8b0d7be95c6d0bf97322ec2ep@chr6:78171774..78171792, +
6.82e-18FFCP PHASE2:Hg19::chr6:50787466..50787500,+#_9db70357962f6985262170f23b1e2334p@chr6:50787466..50787500, +
6.82e-18FFCP PHASE1:Hg19::chr6:50787466..50787500,+#_9db70357962f6985262170f23b1e2334p@chr6:50787466..50787500, +
8.24e-18FFCP PHASE1:Hg19::chr11:47279167..47279178,+#_268b3237b5e8b5a487678e4e467c800ep10@NR1H3
8.24e-18FFCP PHASE2:Hg19::chr11:47279167..47279178,+#_268b3237b5e8b5a487678e4e467c800ep10@NR1H3
1.27e-17FFCP PHASE2:Hg19::chr7:143079562..143079573,+#_e2e815be7d00eac1179babc198531402p39@ZYX
1.27e-17FFCP PHASE1:Hg19::chr7:143079562..143079573,+#_e2e815be7d00eac1179babc198531402p39@ZYX
1.46e-17FFCP PHASE2:Hg19::chr4:13379049..13379051,+#_9f2bf65d7252f71addc5d87db105c714p@chr4:13379049..13379051, +
1.46e-17FFCP PHASE1:Hg19::chr4:13379049..13379051,+#_9f2bf65d7252f71addc5d87db105c714p@chr4:13379049..13379051, +
1.88e-17FFCP PHASE2:Hg19::chr9:116327296..116327307,+#_de783056292766624eaa1552836c79f0p21@RGS3
1.88e-17FFCP PHASE1:Hg19::chr9:116327296..116327307,+#_de783056292766624eaa1552836c79f0p21@RGS3
6.47e-17FFCP PHASE2:Hg19::chr1:27269555..27269558,+#_dbd730104cb1ef84ef0e7342e2ccb6afp@chr1:27269555..27269558, +
6.47e-17FFCP PHASE1:Hg19::chr1:27269555..27269558,+#_dbd730104cb1ef84ef0e7342e2ccb6afp@chr1:27269555..27269558, +
1.45e-16FFCP PHASE1:Hg19::chr12:57522813..57522825,-#_552b63e7733a15c9b72652af6e94544bp10@STAT6
1.45e-16FFCP PHASE2:Hg19::chr12:57522813..57522825,-#_552b63e7733a15c9b72652af6e94544bp10@STAT6
2.33e-16FFCP PHASE1:Hg19::chr1:156677222..156677267,-#_ed68fb67697caf99d55eefc88dddfbdep@chr1:156677222..156677267, -
2.33e-16FFCP PHASE2:Hg19::chr1:156677222..156677267,-#_ed68fb67697caf99d55eefc88dddfbdep@chr1:156677222..156677267, -
3.77e-16FFCP PHASE2:Hg19::chr4:1167293..1167308,-#_c203674301e66b08869e45098f3fca85p18@SPON2
3.77e-16FFCP PHASE1:Hg19::chr4:1167293..1167308,-#_c203674301e66b08869e45098f3fca85p18@SPON2
1.78e-15FFCP PHASE1:Hg19::chr9:129376073..129376080,-#_e739111c559657fed44b1c6fbdf7239dp2@ENST00000451449
1.78e-15FFCP PHASE2:Hg19::chr9:129376073..129376080,-#_e739111c559657fed44b1c6fbdf7239dp2@ENST00000451449
4.8e-15FFCP PHASE2:Hg19::chr22:45898587..45898598,+#_0529bc77a2e21932ba3debf32636df7ep13@FBLN1
4.8e-15FFCP PHASE1:Hg19::chr22:45898587..45898598,+#_0529bc77a2e21932ba3debf32636df7ep13@FBLN1
9.41e-15FFCP PHASE2:Hg19::chr19:38878454..38878497,-#_b0c840d2c3383ee2a609c3649e38870ep1@GGN
9.41e-15FFCP PHASE1:Hg19::chr19:38878454..38878497,-#_b0c840d2c3383ee2a609c3649e38870ep1@GGN
4.04e-14FFCP PHASE2:Hg19::chr9:123165410..123165421,-#_e8919299e44d0fe41245068ebb4fd562p14@CDK5RAP2
4.04e-14FFCP PHASE1:Hg19::chr9:123165410..123165421,-#_e8919299e44d0fe41245068ebb4fd562p14@CDK5RAP2
6.62e-14FFCP PHASE2:Hg19::chr6:50786547..50786564,+#_f147465f7cb852d1f1f91e00ec4f0133p3@TFAP2B
6.62e-14FFCP PHASE1:Hg19::chr6:50786547..50786564,+#_f147465f7cb852d1f1f91e00ec4f0133p3@TFAP2B
7.57e-14FFCP PHASE1:Hg19::chr12:45904157..45904158,-#_cebdfc5a529cf0ac45ed0875ac449506p@chr12:45904157..45904158, -
7.57e-14FFCP PHASE2:Hg19::chr12:45904157..45904158,-#_cebdfc5a529cf0ac45ed0875ac449506p@chr12:45904157..45904158, -
1.37e-13FFCP PHASE1:Hg19::chr3:4722301..4722324,+#_b1a9c1968d2a8e676b3a9ad79ebbd892p@chr3:4722301..4722324, +
1.37e-13FFCP PHASE2:Hg19::chr3:4722301..4722324,+#_b1a9c1968d2a8e676b3a9ad79ebbd892p@chr3:4722301..4722324, +
1.54e-13FFCP PHASE1:Hg19::chr12:1609708..1609723,+#_fb9ba835d83cff39ebdc62eca865708fp2@LOC100292680
1.54e-13FFCP PHASE2:Hg19::chr12:1609708..1609723,+#_fb9ba835d83cff39ebdc62eca865708fp2@LOC100292680
1.55e-13FFCP PHASE2:Hg19::chrX:13792679..13792690,-#_efe6b5a96e0b630b7b37aac0170428c7p@chrX:13792679..13792690, -
1.55e-13FFCP PHASE1:Hg19::chrX:13792679..13792690,-#_efe6b5a96e0b630b7b37aac0170428c7p@chrX:13792679..13792690, -
1.75e-13FFCP PHASE1:Hg19::chr12:81102260..81102302,+#_79be7240f33f9156a562017654ea35a1p@chr12:81102260..81102302, +
1.75e-13FFCP PHASE2:Hg19::chr12:81102260..81102302,+#_79be7240f33f9156a562017654ea35a1p@chr12:81102260..81102302, +
4.17e-13FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_d33c0ab1103775752e9037f764625d6ep@chr6:78171746..78171769, +
4.17e-13FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_d33c0ab1103775752e9037f764625d6ep@chr6:78171746..78171769, +
4.47e-13FFCP PHASE1:Hg19::chr7:100425082..100425085,-#_4434d03e9e07a30063d31dcc104f9a92p6@EPHB4
4.47e-13FFCP PHASE2:Hg19::chr7:100425082..100425085,-#_4434d03e9e07a30063d31dcc104f9a92p6@EPHB4
5.2e-13FFCP PHASE2:Hg19::chr19:7580234..7580253,+#_a9bebdc9e94f5dc41054b5b595cc981ap@chr19:7580234..7580253, +
5.2e-13FFCP PHASE1:Hg19::chr19:7580234..7580253,+#_a9bebdc9e94f5dc41054b5b595cc981ap@chr19:7580234..7580253, +
5.73e-13FFCP PHASE2:Hg19::chr1:110625307..110625328,+#_7fa2ba553dac36b6f1f5266b709ee03ap1@ENST00000554808
5.73e-13FFCP PHASE1:Hg19::chr1:110625307..110625328,+#_7fa2ba553dac36b6f1f5266b709ee03ap1@ENST00000554808
7.57e-13FFCP PHASE1:Hg19::chr1:110613276..110613299,-#_5b726f7a394fa5692b140f4efe213948p2@ALX3
7.57e-13FFCP PHASE2:Hg19::chr1:110613276..110613299,-#_5b726f7a394fa5692b140f4efe213948p2@ALX3
1.28e-12FFCP PHASE2:Hg19::chr1:110613238..110613272,-#_e191dd3194adca2b93af9111ec4a8f9dp1@ALX3
1.28e-12FFCP PHASE1:Hg19::chr1:110613238..110613272,-#_e191dd3194adca2b93af9111ec4a8f9dp1@ALX3
1.29e-12FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_f15430974ece7d7a0fb9bb8ba16c2482p1@ENST00000449986
1.29e-12FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_f15430974ece7d7a0fb9bb8ba16c2482p1@ENST00000449986
2.32e-12FFCP PHASE1:Hg19::chr16:54962394..54962407,+#_016d4486d3ac47681bc3c2e15eeeb4d0p@chr16:54962394..54962407, +
2.32e-12FFCP PHASE1:Hg19::chr17:27052878..27052889,+#_016d4486d3ac47681bc3c2e15eeeb4d0p@chr17:27052878..27052889, +
2.32e-12FFCP PHASE2:Hg19::chr16:54962394..54962407,+#_016d4486d3ac47681bc3c2e15eeeb4d0p@chr16:54962394..54962407, +
2.32e-12FFCP PHASE2:Hg19::chr17:27052878..27052889,+#_016d4486d3ac47681bc3c2e15eeeb4d0p@chr17:27052878..27052889, +
3.24e-12FFCP PHASE2:Hg19::chr2:71206252..71206265,+#_ad84ce9af1c7d44d5dd22187fc104611p8@ANKRD53
3.24e-12FFCP PHASE1:Hg19::chr2:71206252..71206265,+#_ad84ce9af1c7d44d5dd22187fc104611p8@ANKRD53
3.24e-12FFCP PHASE2:Hg19::chr1:201798251..201798253,+#_ad84ce9af1c7d44d5dd22187fc104611p5@IPO9
3.24e-12FFCP PHASE1:Hg19::chr1:201798251..201798253,+#_ad84ce9af1c7d44d5dd22187fc104611p5@IPO9
3.56e-12FFCP PHASE1:Hg19::chr6:50786571..50786590,+#_357fa7259ed9390750283c6d553fcb3ep2@TFAP2B
3.56e-12FFCP PHASE2:Hg19::chr6:50786571..50786590,+#_357fa7259ed9390750283c6d553fcb3ep2@TFAP2B
3.84e-12FFCP PHASE1:Hg19::chr11:19619705..19619737,+#_bbf528fb1b843d6447272c1d573df887p@chr11:19619705..19619737, +
3.84e-12FFCP PHASE2:Hg19::chr11:19619705..19619737,+#_bbf528fb1b843d6447272c1d573df887p@chr11:19619705..19619737, +
3.92e-12FFCP PHASE2:Hg19::chr1:68851155..68851158,+#_67eccd8fd9d0d66a640d833ffbf7da38p@chr1:68851155..68851158, +
3.92e-12FFCP PHASE1:Hg19::chr1:68851155..68851158,+#_67eccd8fd9d0d66a640d833ffbf7da38p@chr1:68851155..68851158, +
4.16e-12FFCP PHASE2:Hg19::chr2:26972981..26973006,+#_c2817383229743832e89c83b6fe414b8p@chr2:26972981..26973006, +
4.16e-12FFCP PHASE1:Hg19::chr2:26972981..26973006,+#_c2817383229743832e89c83b6fe414b8p@chr2:26972981..26973006, +
4.39e-12FFCP PHASE1:Hg19::chr6:111888474..111888487,-#_bf734b9d729650b7de47a9cd4a2d63e2p11@TRAF3IP2
4.39e-12FFCP PHASE2:Hg19::chr6:111888474..111888487,-#_bf734b9d729650b7de47a9cd4a2d63e2p11@TRAF3IP2

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